Wall clock time and date at job start Wed Apr 1 2020 05:44:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.46539 * 2 1 4 4 C 1.34229 * 116.99823 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99907 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00412 * 179.97438 * 4 3 2 7 7 N 1.46895 * 109.47585 * 179.97438 * 6 4 3 8 8 C 1.46900 * 110.99803 * 66.04744 * 7 6 4 9 9 C 1.50697 * 109.47358 * 193.95654 * 8 7 6 10 10 H 1.08002 * 119.99867 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00229 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00269 * 179.97438 * 11 9 8 13 13 Si 1.86793 * 119.99920 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47390 * 90.00013 * 13 11 9 15 15 H 1.48503 * 109.47175 * 209.99963 * 13 11 9 16 16 H 1.48498 * 109.47416 * 330.00082 * 13 11 9 17 17 C 1.46901 * 111.00282 * 189.99615 * 7 6 4 18 18 C 1.50701 * 109.46942 * 169.99936 * 17 7 6 19 19 C 1.35102 * 126.41571 * 270.00386 * 18 17 7 20 20 C 1.50709 * 125.68264 * 0.02562 * 19 18 17 21 21 N 1.33513 * 108.62947 * 180.02562 * 19 18 17 22 22 C 1.32555 * 109.15792 * 0.02562 * 21 19 18 23 23 C 1.40938 * 132.32778 * 180.02562 * 22 21 19 24 24 C 1.36025 * 119.32668 * 179.97438 * 23 22 21 25 25 C 1.50703 * 120.14805 * 179.97438 * 24 23 22 26 26 C 1.40467 * 119.69437 * 359.97438 * 24 23 22 27 27 C 1.34948 * 120.30179 * 0.02562 * 26 24 23 28 28 N 1.36483 * 120.61106 * 359.97438 * 27 26 24 29 29 H 1.09003 * 109.46820 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47768 * 300.00020 * 1 2 3 31 31 H 1.09001 * 109.47204 * 60.00722 * 1 2 3 32 32 H 1.08988 * 109.47768 * 239.99980 * 2 1 3 33 33 H 1.08998 * 109.46713 * 119.99226 * 2 1 3 34 34 H 1.09007 * 109.47169 * 59.99899 * 6 4 3 35 35 H 1.09002 * 109.46768 * 300.00328 * 6 4 3 36 36 H 1.09003 * 109.47236 * 313.95219 * 8 7 6 37 37 H 1.08997 * 109.47532 * 73.95177 * 8 7 6 38 38 H 0.96998 * 120.00256 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.46693 * 50.00640 * 17 7 6 40 40 H 1.08991 * 109.47356 * 290.00800 * 17 7 6 41 41 H 1.09003 * 109.46763 * 269.97345 * 20 19 18 42 42 H 1.08993 * 109.46788 * 29.97693 * 20 19 18 43 43 H 1.08998 * 109.46812 * 149.97605 * 20 19 18 44 44 H 1.08000 * 120.33162 * 0.27122 * 23 22 21 45 45 H 1.08999 * 109.46951 * 90.00621 * 25 24 23 46 46 H 1.09002 * 109.46736 * 210.00272 * 25 24 23 47 47 H 1.08990 * 109.47431 * 329.99989 * 25 24 23 48 48 H 1.08006 * 119.84860 * 179.97438 * 26 24 23 49 49 H 1.08004 * 119.69752 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9206 2.9375 0.0000 7 7 5.3875 2.8608 0.0014 8 6 5.8852 2.2763 -1.2511 9 6 7.3345 1.8972 -1.0875 10 1 7.8359 2.0732 -0.1473 11 6 8.0208 1.3265 -2.1385 12 7 9.2858 0.9961 -1.9958 13 14 7.1538 1.0227 -3.7649 14 1 7.3062 2.2146 -4.6373 15 1 7.7547 -0.1597 -4.4328 16 1 5.7112 0.7715 -3.5176 17 6 5.9837 4.1822 0.2389 18 6 7.4638 4.0299 0.4777 19 6 8.0684 3.8397 1.6709 20 6 7.3716 3.7421 3.0037 21 7 9.3858 3.7527 1.4725 22 6 9.6403 3.8834 0.1782 23 6 10.8415 3.8689 -0.5590 24 6 10.7967 4.0308 -1.9089 25 6 12.0698 4.0190 -2.7152 26 6 9.5584 4.2090 -2.5476 27 6 8.4167 4.2206 -1.8284 28 7 8.4472 4.0593 -0.4734 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.5842 3.4703 0.8895 35 1 3.5850 3.4691 -0.8905 36 1 5.3025 1.3877 -1.4942 37 1 5.7889 3.0052 -2.0557 38 1 9.7686 0.5950 -2.7353 39 1 5.5196 4.6382 1.1135 40 1 5.8194 4.8168 -0.6318 41 1 7.2892 4.7358 3.4442 42 1 6.3753 3.3232 2.8629 43 1 7.9467 3.0968 3.6678 44 1 11.7874 3.7260 -0.0578 45 1 12.2917 2.9990 -3.0289 46 1 11.9486 4.6513 -3.5948 47 1 12.8897 4.3982 -2.1054 48 1 9.5200 4.3382 -3.6192 49 1 7.4700 4.3587 -2.3295 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001139680019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:41 Heat of formation + Delta-G solvation = 32.742552 kcal Electronic energy + Delta-G solvation = -32216.987498 eV Core-core repulsion = 28146.872020 eV Total energy + Delta-G solvation = -4070.115478 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.93792 -40.16048 -37.34554 -36.81393 -35.80070 -33.37096 -32.41643 -31.81915 -31.25665 -29.52491 -28.70809 -27.95959 -27.50188 -25.20922 -23.70710 -23.01238 -22.00905 -21.37875 -20.50223 -20.05178 -19.14851 -17.46698 -17.24528 -16.48951 -16.39812 -15.87289 -15.78584 -15.05453 -14.81193 -14.41176 -14.31137 -14.06047 -13.89518 -13.53180 -13.31939 -12.99295 -12.90601 -12.57272 -12.54584 -12.41583 -12.32607 -12.16954 -11.99977 -11.99230 -11.65746 -11.56401 -11.51154 -11.39748 -11.14153 -10.81080 -10.72704 -10.47708 -10.35107 -10.26879 -10.03224 -9.84354 -9.65994 -9.05394 -8.93581 -8.47489 -7.68109 -7.51194 -6.56108 -5.99776 -3.94462 1.88201 2.29224 2.61903 2.80928 3.16018 3.28987 3.32970 3.58669 3.93490 4.38207 4.60736 4.69724 4.88381 4.89107 5.03076 5.10337 5.25320 5.26331 5.32843 5.39502 5.42171 5.51863 5.58378 5.60995 5.66283 5.70339 5.80119 5.82239 5.86381 5.94859 6.06693 6.10275 6.13403 6.22807 6.30655 6.41714 6.54810 6.60063 6.67322 6.68082 6.74823 6.83644 7.11614 7.23144 7.50021 7.61447 7.68773 7.69884 7.78990 8.19834 8.23278 8.62141 8.96562 9.10974 9.55307 11.06863 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.004316 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.494093 B = 6485.404027 C = 7907.029703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.062 3.938 3 O -0.370 6.370 4 C 0.452 3.548 5 O -0.466 6.466 6 C 0.064 3.936 7 N -0.511 5.511 8 C 0.155 3.845 9 C -0.507 4.507 10 H 0.100 0.900 11 C 0.083 3.917 12 N -0.867 5.867 13 Si 0.850 3.150 14 H -0.278 1.278 15 H -0.286 1.286 16 H -0.272 1.272 17 C 0.152 3.848 18 C -0.033 4.033 19 C 0.059 3.941 20 C -0.062 4.062 21 N -0.517 5.517 22 C 0.258 3.742 23 C -0.096 4.096 24 C -0.043 4.043 25 C -0.104 4.104 26 C -0.167 4.167 27 C 0.137 3.863 28 N -0.320 5.320 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.068 0.932 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.043 0.957 37 H -0.026 1.026 38 H 0.261 0.739 39 H 0.085 0.915 40 H 0.030 0.970 41 H 0.058 0.942 42 H 0.070 0.930 43 H 0.065 0.935 44 H 0.129 0.871 45 H 0.071 0.929 46 H 0.059 0.941 47 H 0.061 0.939 48 H 0.125 0.875 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.194 7.586 0.788 11.946 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.012 4.012 3 O -0.288 6.288 4 C 0.292 3.708 5 O -0.349 6.349 6 C -0.065 4.065 7 N -0.237 5.237 8 C 0.030 3.970 9 C -0.545 4.545 10 H 0.118 0.882 11 C -0.121 4.121 12 N -0.504 5.504 13 Si 0.678 3.322 14 H -0.204 1.204 15 H -0.212 1.212 16 H -0.197 1.197 17 C 0.024 3.976 18 C -0.147 4.147 19 C -0.074 4.074 20 C -0.120 4.120 21 N -0.238 5.238 22 C 0.014 3.986 23 C -0.116 4.116 24 C -0.049 4.049 25 C -0.160 4.160 26 C -0.188 4.188 27 C 0.013 3.987 28 N 0.011 4.989 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.082 0.918 36 H 0.061 0.939 37 H -0.009 1.009 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.048 0.952 41 H 0.077 0.923 42 H 0.089 0.911 43 H 0.084 0.916 44 H 0.147 0.853 45 H 0.089 0.911 46 H 0.078 0.922 47 H 0.080 0.920 48 H 0.143 0.857 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -8.176 6.729 1.691 10.723 hybrid contribution -1.371 -0.443 -2.629 2.998 sum -9.548 6.287 -0.939 11.470 Atomic orbital electron populations 1.21784 0.92982 1.02674 1.03252 1.22922 0.94905 0.80798 1.02596 1.86460 1.25333 1.31948 1.85083 1.23701 0.80082 0.93264 0.73764 1.90762 1.59621 1.42535 1.41992 1.21506 0.91445 0.90208 1.03380 1.61837 1.00539 1.21646 1.39666 1.20446 0.98632 0.94094 0.83869 1.21429 0.92464 1.39497 1.01091 0.88199 1.24766 0.94651 0.95296 0.97411 1.69894 1.08098 1.40985 1.31381 0.87250 0.80810 0.78304 0.85817 1.20422 1.21195 1.19706 1.20119 0.88692 0.89035 0.99787 1.19821 0.89869 1.17460 0.87528 1.20248 0.89802 1.03090 0.94305 1.19991 0.99325 1.01011 0.91657 1.70490 1.15212 1.25241 1.12887 1.20363 0.86568 1.03608 0.88018 1.19577 0.94553 1.04987 0.92524 1.19274 0.94713 0.97929 0.93029 1.20661 0.94282 1.02251 0.98836 1.20115 0.91280 1.08376 0.99045 1.20775 0.99008 0.97243 0.81645 1.42325 1.08106 1.42867 1.05651 0.90517 0.91589 0.91695 0.91516 0.91314 0.87356 0.91780 0.93945 1.00861 0.92920 0.89700 0.95206 0.92290 0.91110 0.91649 0.85323 0.91055 0.92228 0.92049 0.85673 0.84644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 10.29 37.16 0.38 -0.93 16 2 C 0.06 0.78 6.19 37.16 0.23 1.01 16 3 O -0.37 -5.47 10.22 -39.25 -0.40 -5.87 16 4 C 0.45 7.95 7.54 36.00 0.27 8.22 16 5 O -0.47 -10.31 14.20 -18.76 -0.27 -10.57 16 6 C 0.06 0.99 5.56 -4.98 -0.03 0.96 16 7 N -0.51 -10.07 4.30 -238.97 -1.03 -11.10 16 8 C 0.16 3.63 3.18 -4.98 -0.02 3.61 16 9 C -0.51 -13.51 5.61 -34.44 -0.19 -13.70 16 10 H 0.10 2.99 4.68 -52.49 -0.25 2.75 16 11 C 0.08 2.23 4.06 -17.82 -0.07 2.16 16 12 N -0.87 -24.43 13.96 55.43 0.77 -23.66 16 13 Si 0.85 20.78 27.47 -169.99 -4.67 16.11 16 14 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 15 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 16 H -0.27 -6.76 6.54 56.52 0.37 -6.39 16 17 C 0.15 2.65 4.98 -4.97 -0.02 2.62 16 18 C -0.03 -0.69 4.14 -81.47 -0.34 -1.03 16 19 C 0.06 1.25 6.74 -82.97 -0.56 0.69 16 20 C -0.06 -1.04 10.03 36.01 0.36 -0.68 16 21 N -0.52 -12.21 11.32 -9.00 -0.10 -12.31 16 22 C 0.26 5.96 7.34 -156.04 -1.15 4.82 16 23 C -0.10 -2.00 9.75 -39.35 -0.38 -2.38 16 24 C -0.04 -0.82 5.88 -104.58 -0.62 -1.43 16 25 C -0.10 -1.52 10.02 36.01 0.36 -1.16 16 26 C -0.17 -3.22 9.47 -39.91 -0.38 -3.60 16 27 C 0.14 2.82 7.30 -16.65 -0.12 2.69 16 28 N -0.32 -7.04 1.60 -58.46 -0.09 -7.13 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.07 0.54 8.14 -51.94 -0.42 0.11 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.07 0.89 8.13 -51.94 -0.42 0.46 16 33 H 0.07 0.87 8.13 -51.93 -0.42 0.45 16 34 H 0.11 1.29 7.93 -51.92 -0.41 0.88 16 35 H 0.06 0.89 8.12 -51.93 -0.42 0.46 16 36 H 0.04 1.10 4.85 -51.93 -0.25 0.84 16 37 H -0.03 -0.59 6.61 -51.93 -0.34 -0.93 16 38 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 39 H 0.08 1.20 7.56 -51.93 -0.39 0.80 16 40 H 0.03 0.49 8.01 -51.93 -0.42 0.07 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 1.13 7.75 -51.93 -0.40 0.73 16 43 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 44 H 0.13 2.45 8.06 -52.49 -0.42 2.03 16 45 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 47 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 48 H 0.13 2.12 8.06 -52.48 -0.42 1.69 16 49 H 0.14 2.64 7.17 -52.48 -0.38 2.27 16 LS Contribution 390.32 15.07 5.88 5.88 Total: -1.00 -34.19 390.32 -9.67 -43.86 By element: Atomic # 1 Polarization: 10.41 SS G_CDS: -7.50 Total: 2.91 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: -2.27 Total: 1.87 kcal Atomic # 7 Polarization: -53.75 SS G_CDS: -0.45 Total: -54.19 kcal Atomic # 8 Polarization: -15.77 SS G_CDS: -0.67 Total: -16.44 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.67 Total: 16.11 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.19 -9.67 -43.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139680019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.598 kcal (2) G-P(sol) polarization free energy of solvation -34.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.855 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds