Wall clock time and date at job start Wed Apr 1 2020 05:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.45202 * 109.46539 * 2 1 4 4 C 1.34229 * 116.99823 * 179.97438 * 3 2 1 5 5 O 1.20833 * 119.99907 * 359.97438 * 4 3 2 6 6 C 1.50697 * 120.00412 * 179.97438 * 4 3 2 7 7 N 1.46895 * 109.47585 * 179.97438 * 6 4 3 8 8 C 1.46900 * 110.99803 * 66.04744 * 7 6 4 9 9 C 1.50697 * 109.47358 * 193.95654 * 8 7 6 10 10 H 1.08002 * 119.99867 * 359.97438 * 9 8 7 11 11 C 1.37881 * 120.00229 * 180.02562 * 9 8 7 12 12 N 1.31519 * 120.00269 * 179.97438 * 11 9 8 13 13 Si 1.86793 * 119.99920 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47390 * 90.00013 * 13 11 9 15 15 H 1.48503 * 109.47175 * 209.99963 * 13 11 9 16 16 H 1.48498 * 109.47416 * 330.00082 * 13 11 9 17 17 C 1.46901 * 111.00282 * 189.99615 * 7 6 4 18 18 C 1.50701 * 109.46942 * 169.99936 * 17 7 6 19 19 C 1.35102 * 126.41571 * 270.00386 * 18 17 7 20 20 C 1.50709 * 125.68264 * 0.02562 * 19 18 17 21 21 N 1.33513 * 108.62947 * 180.02562 * 19 18 17 22 22 C 1.32555 * 109.15792 * 0.02562 * 21 19 18 23 23 C 1.40938 * 132.32778 * 180.02562 * 22 21 19 24 24 C 1.36025 * 119.32668 * 179.97438 * 23 22 21 25 25 C 1.50703 * 120.14805 * 179.97438 * 24 23 22 26 26 C 1.40467 * 119.69437 * 359.97438 * 24 23 22 27 27 C 1.34948 * 120.30179 * 0.02562 * 26 24 23 28 28 N 1.36483 * 120.61106 * 359.97438 * 27 26 24 29 29 H 1.09003 * 109.46820 * 179.97438 * 1 2 3 30 30 H 1.08988 * 109.47768 * 300.00020 * 1 2 3 31 31 H 1.09001 * 109.47204 * 60.00722 * 1 2 3 32 32 H 1.08988 * 109.47768 * 239.99980 * 2 1 3 33 33 H 1.08998 * 109.46713 * 119.99226 * 2 1 3 34 34 H 1.09007 * 109.47169 * 59.99899 * 6 4 3 35 35 H 1.09002 * 109.46768 * 300.00328 * 6 4 3 36 36 H 1.09003 * 109.47236 * 313.95219 * 8 7 6 37 37 H 1.08997 * 109.47532 * 73.95177 * 8 7 6 38 38 H 0.96998 * 120.00256 * 180.02562 * 12 11 9 39 39 H 1.09001 * 109.46693 * 50.00640 * 17 7 6 40 40 H 1.08991 * 109.47356 * 290.00800 * 17 7 6 41 41 H 1.09003 * 109.46763 * 269.97345 * 20 19 18 42 42 H 1.08993 * 109.46788 * 29.97693 * 20 19 18 43 43 H 1.08998 * 109.46812 * 149.97605 * 20 19 18 44 44 H 1.08000 * 120.33162 * 0.27122 * 23 22 21 45 45 H 1.08999 * 109.46951 * 90.00621 * 25 24 23 46 46 H 1.09002 * 109.46736 * 210.00272 * 25 24 23 47 47 H 1.08990 * 109.47431 * 329.99989 * 25 24 23 48 48 H 1.08006 * 119.84860 * 179.97438 * 26 24 23 49 49 H 1.08004 * 119.69752 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0139 1.3690 0.0000 4 6 3.3446 1.5450 0.0005 5 8 4.0807 0.5868 0.0015 6 6 3.9206 2.9375 0.0000 7 7 5.3875 2.8608 0.0014 8 6 5.8852 2.2763 -1.2511 9 6 7.3345 1.8972 -1.0875 10 1 7.8359 2.0732 -0.1473 11 6 8.0208 1.3265 -2.1385 12 7 9.2858 0.9961 -1.9958 13 14 7.1538 1.0227 -3.7649 14 1 7.3062 2.2146 -4.6373 15 1 7.7547 -0.1597 -4.4328 16 1 5.7112 0.7715 -3.5176 17 6 5.9837 4.1822 0.2389 18 6 7.4638 4.0299 0.4777 19 6 8.0684 3.8397 1.6709 20 6 7.3716 3.7421 3.0037 21 7 9.3858 3.7527 1.4725 22 6 9.6403 3.8834 0.1782 23 6 10.8415 3.8689 -0.5590 24 6 10.7967 4.0308 -1.9089 25 6 12.0698 4.0190 -2.7152 26 6 9.5584 4.2090 -2.5476 27 6 8.4167 4.2206 -1.8284 28 7 8.4472 4.0593 -0.4734 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8901 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5137 0.8901 34 1 3.5842 3.4703 0.8895 35 1 3.5850 3.4691 -0.8905 36 1 5.3025 1.3877 -1.4942 37 1 5.7889 3.0052 -2.0557 38 1 9.7686 0.5950 -2.7353 39 1 5.5196 4.6382 1.1135 40 1 5.8194 4.8168 -0.6318 41 1 7.2892 4.7358 3.4442 42 1 6.3753 3.3232 2.8629 43 1 7.9467 3.0968 3.6678 44 1 11.7874 3.7260 -0.0578 45 1 12.2917 2.9990 -3.0289 46 1 11.9486 4.6513 -3.5948 47 1 12.8897 4.3982 -2.1054 48 1 9.5200 4.3382 -3.6192 49 1 7.4700 4.3587 -2.3295 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001139680019.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:39 Heat of formation + Delta-G solvation = 11.723517 kcal Electronic energy + Delta-G solvation = -32217.898952 eV Core-core repulsion = 28146.872020 eV Total energy + Delta-G solvation = -4071.026932 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.50283 -41.48621 -38.75673 -38.29010 -37.22959 -34.94091 -34.33332 -32.91333 -32.57685 -30.94066 -30.42940 -29.33226 -28.97735 -26.67522 -25.19231 -24.15382 -23.58993 -22.88860 -21.92759 -21.50568 -20.70619 -19.13200 -18.80170 -17.95311 -17.70202 -17.33390 -17.16801 -16.59814 -16.52597 -15.88746 -15.80668 -15.46121 -15.37084 -14.98729 -14.74254 -14.42218 -14.18662 -13.99551 -13.81160 -13.73966 -13.61039 -13.58348 -13.40606 -13.34581 -12.98599 -12.89772 -12.74384 -12.63474 -12.55272 -12.49247 -12.23134 -12.05105 -11.87999 -11.84422 -11.55978 -11.48622 -11.26157 -10.74762 -10.65614 -10.48024 -9.15577 -9.07162 -8.20364 -7.97628 -6.01896 0.32838 0.75562 1.22149 1.28913 1.32493 1.36969 1.61733 2.07238 2.36941 2.40757 3.03739 3.20412 3.29990 3.62656 3.81768 3.86408 3.97868 4.03631 4.10577 4.14759 4.21176 4.30264 4.33440 4.37845 4.44705 4.49432 4.56891 4.71408 4.72317 4.78656 4.84678 4.92080 4.92940 4.95402 4.97200 5.01694 5.09594 5.14105 5.21285 5.28365 5.32682 5.47437 5.60673 5.70657 5.74366 5.95278 6.08374 6.16898 6.25433 6.64876 6.67863 6.91245 7.00713 7.36622 7.50481 9.03879 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013133 B = 0.004316 C = 0.003540 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2131.494093 B = 6485.404027 C = 7907.029703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 O -0.360 6.360 4 C 0.453 3.547 5 O -0.522 6.522 6 C 0.064 3.936 7 N -0.533 5.533 8 C 0.170 3.830 9 C -0.501 4.501 10 H 0.063 0.937 11 C 0.048 3.952 12 N -0.900 5.900 13 Si 0.897 3.103 14 H -0.251 1.251 15 H -0.298 1.298 16 H -0.281 1.281 17 C 0.154 3.846 18 C -0.045 4.045 19 C 0.036 3.964 20 C -0.055 4.055 21 N -0.556 5.556 22 C 0.231 3.769 23 C -0.125 4.125 24 C -0.039 4.039 25 C -0.100 4.100 26 C -0.169 4.169 27 C 0.120 3.880 28 N -0.324 5.324 29 H 0.097 0.903 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.153 0.847 35 H 0.091 0.909 36 H 0.016 0.984 37 H -0.017 1.017 38 H 0.257 0.743 39 H 0.125 0.875 40 H 0.045 0.955 41 H 0.089 0.911 42 H 0.080 0.920 43 H 0.054 0.946 44 H 0.133 0.867 45 H 0.065 0.935 46 H 0.086 0.914 47 H 0.079 0.921 48 H 0.151 0.849 49 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.525 9.430 -0.159 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.021 4.021 3 O -0.278 6.278 4 C 0.296 3.704 5 O -0.410 6.410 6 C -0.064 4.064 7 N -0.258 5.258 8 C 0.043 3.957 9 C -0.539 4.539 10 H 0.081 0.919 11 C -0.153 4.153 12 N -0.539 5.539 13 Si 0.724 3.276 14 H -0.175 1.175 15 H -0.224 1.224 16 H -0.206 1.206 17 C 0.027 3.973 18 C -0.159 4.159 19 C -0.097 4.097 20 C -0.113 4.113 21 N -0.279 5.279 22 C -0.013 4.013 23 C -0.145 4.145 24 C -0.045 4.045 25 C -0.156 4.156 26 C -0.190 4.190 27 C -0.004 4.004 28 N 0.007 4.993 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.082 0.918 34 H 0.171 0.829 35 H 0.109 0.891 36 H 0.034 0.966 37 H 0.001 0.999 38 H 0.066 0.934 39 H 0.143 0.857 40 H 0.063 0.937 41 H 0.108 0.892 42 H 0.098 0.902 43 H 0.073 0.927 44 H 0.151 0.849 45 H 0.084 0.916 46 H 0.105 0.895 47 H 0.098 0.902 48 H 0.169 0.831 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -10.556 8.615 0.748 13.646 hybrid contribution -0.671 -1.041 -2.273 2.589 sum -11.227 7.575 -1.526 13.629 Atomic orbital electron populations 1.21791 0.89624 1.04307 1.03982 1.23214 0.97465 0.79683 1.01776 1.86467 1.23819 1.33186 1.84297 1.24236 0.80503 0.93600 0.72056 1.90752 1.60984 1.44381 1.44867 1.21725 0.88622 0.89431 1.06664 1.61581 1.03353 1.23133 1.37751 1.20086 0.96102 0.93558 0.85971 1.21413 0.93991 1.39009 0.99468 0.91857 1.25221 0.94921 0.95348 0.99828 1.70041 1.09352 1.42594 1.31947 0.86509 0.79083 0.78679 0.83338 1.17511 1.22425 1.20627 1.20315 0.86588 0.88236 1.02176 1.20474 0.91427 1.16737 0.87215 1.20990 0.89409 1.02908 0.96363 1.20056 0.98952 1.02670 0.89613 1.70443 1.16884 1.26852 1.13708 1.20769 0.87770 1.04357 0.88388 1.19868 0.94373 1.06651 0.93649 1.19739 0.96410 0.95693 0.92626 1.20723 0.92792 1.02559 0.99552 1.20572 0.91118 1.06952 1.00330 1.21108 0.99959 0.97820 0.81472 1.42418 1.08059 1.42642 1.06177 0.88458 0.90591 0.91155 0.92838 0.91850 0.82932 0.89110 0.96564 0.99927 0.93365 0.85734 0.93662 0.89238 0.90155 0.92660 0.84890 0.91618 0.89541 0.90210 0.83097 0.83723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 10.29 71.98 0.74 -1.37 16 2 C 0.05 1.27 6.19 71.98 0.45 1.71 16 3 O -0.36 -9.98 10.22 -51.41 -0.53 -10.50 16 4 C 0.45 15.32 7.54 71.23 0.54 15.86 16 5 O -0.52 -23.35 14.20 21.94 0.31 -23.04 16 6 C 0.06 1.76 5.56 85.56 0.48 2.24 16 7 N -0.53 -19.98 4.30 -909.96 -3.91 -23.89 16 8 C 0.17 7.79 3.18 85.56 0.27 8.06 16 9 C -0.50 -26.93 5.61 25.60 0.14 -26.79 16 10 H 0.06 3.90 4.68 -2.91 -0.01 3.89 16 11 C 0.05 2.59 4.06 84.65 0.34 2.93 16 12 N -0.90 -51.82 13.96 21.45 0.30 -51.52 16 13 Si 0.90 42.65 27.47 68.60 1.88 44.54 16 14 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 15 H -0.30 -14.60 7.11 99.48 0.71 -13.90 16 16 H -0.28 -13.67 6.54 99.48 0.65 -13.02 16 17 C 0.15 4.98 4.98 85.56 0.43 5.40 16 18 C -0.05 -1.87 4.14 41.06 0.17 -1.70 16 19 C 0.04 1.53 6.74 41.58 0.28 1.81 16 20 C -0.06 -1.82 10.03 71.24 0.71 -1.10 16 21 N -0.56 -27.22 11.32 -182.39 -2.06 -29.29 16 22 C 0.23 10.98 7.34 134.11 0.98 11.96 16 23 C -0.12 -5.34 9.75 22.42 0.22 -5.12 16 24 C -0.04 -1.43 5.88 -19.83 -0.12 -1.55 16 25 C -0.10 -2.76 10.02 71.24 0.71 -2.05 16 26 C -0.17 -6.32 9.47 22.06 0.21 -6.11 16 27 C 0.12 4.85 7.30 83.21 0.61 5.46 16 28 N -0.32 -14.31 1.60 -338.87 -0.54 -14.85 16 29 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 33 H 0.06 1.59 8.13 -2.39 -0.02 1.57 16 34 H 0.15 2.88 7.93 -2.38 -0.02 2.86 16 35 H 0.09 2.11 8.12 -2.39 -0.02 2.09 16 36 H 0.02 0.84 4.85 -2.39 -0.01 0.83 16 37 H -0.02 -0.72 6.61 -2.39 -0.02 -0.74 16 38 H 0.26 14.28 8.31 -92.71 -0.77 13.51 16 39 H 0.12 2.99 7.56 -2.39 -0.02 2.97 16 40 H 0.05 1.33 8.01 -2.39 -0.02 1.31 16 41 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.08 2.44 7.75 -2.39 -0.02 2.42 16 43 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.13 5.30 8.06 -2.91 -0.02 5.27 16 45 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 46 H 0.09 1.92 8.10 -2.39 -0.02 1.90 16 47 H 0.08 1.90 8.08 -2.39 -0.02 1.88 16 48 H 0.15 4.72 8.06 -2.91 -0.02 4.69 16 49 H 0.15 5.43 7.17 -2.91 -0.02 5.41 16 Total: -1.00 -78.89 390.32 3.52 -75.38 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.90 Total: 23.53 kcal Atomic # 6 Polarization: 2.48 SS G_CDS: 7.17 Total: 9.65 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -6.22 Total: -119.55 kcal Atomic # 8 Polarization: -33.33 SS G_CDS: -0.21 Total: -33.55 kcal Atomic # 14 Polarization: 42.65 SS G_CDS: 1.88 Total: 44.54 kcal Total: -78.89 3.52 -75.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001139680019.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.101 kcal (2) G-P(sol) polarization free energy of solvation -78.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.377 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds