Wall clock time and date at job start Wed Apr 1 2020 05:05:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47140 * 2 1 4 4 C 1.36939 * 119.99897 * 275.91577 * 3 2 1 5 5 H 1.07999 * 119.99893 * 34.09388 * 4 3 2 6 6 C 1.38809 * 119.99809 * 214.08822 * 4 3 2 7 7 N 1.31622 * 120.00104 * 17.01262 * 6 4 3 8 8 Si 1.86798 * 120.00296 * 197.01136 * 6 4 3 9 9 H 1.48500 * 109.46923 * 90.00136 * 8 6 4 10 10 H 1.48497 * 109.47358 * 210.00321 * 8 6 4 11 11 H 1.48508 * 109.47039 * 330.00496 * 8 6 4 12 12 C 1.46499 * 120.00201 * 95.90853 * 3 2 1 13 13 H 1.08997 * 109.47529 * 177.15394 * 12 3 2 14 14 C 1.53005 * 109.46577 * 57.15737 * 12 3 2 15 15 C 1.52998 * 109.47468 * 297.16022 * 12 3 2 16 16 N 1.46506 * 109.47045 * 304.99585 * 15 12 3 17 17 C 1.34776 * 119.99760 * 179.97438 * 16 15 12 18 18 O 1.21274 * 120.00440 * 0.02562 * 17 16 15 19 19 C 1.50705 * 119.99585 * 179.97438 * 17 16 15 20 20 N 1.46496 * 109.47185 * 180.02562 * 19 17 16 21 21 C 1.39532 * 123.87809 * 269.72995 * 20 19 17 22 22 C 1.39366 * 130.82194 * 0.60486 * 21 20 19 23 23 C 1.37938 * 120.13276 * 179.70017 * 22 21 20 24 24 C 1.38305 * 120.37624 * 359.75006 * 23 22 21 25 25 C 1.38397 * 119.82332 * 0.02562 * 24 23 22 26 26 C 1.37683 * 119.91313 * 359.97438 * 25 24 23 27 27 C 1.51136 * 132.85112 * 179.97438 * 26 25 24 28 28 C 1.34369 * 123.87876 * 90.02199 * 20 19 17 29 29 O 1.21291 * 126.43937 * 359.95042 * 28 20 19 30 30 H 1.08996 * 109.47131 * 59.99902 * 1 2 3 31 31 H 1.09002 * 109.46663 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46632 * 299.99630 * 1 2 3 33 33 H 1.08996 * 109.47131 * 120.00098 * 2 1 3 34 34 H 1.08994 * 109.46724 * 240.00330 * 2 1 3 35 35 H 0.97002 * 120.00193 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.46946 * 60.00273 * 14 12 3 37 37 H 1.09003 * 109.46933 * 180.02562 * 14 12 3 38 38 H 1.09001 * 109.47392 * 299.99488 * 14 12 3 39 39 H 1.09000 * 109.47239 * 64.99675 * 15 12 3 40 40 H 1.09003 * 109.47256 * 184.99457 * 15 12 3 41 41 H 0.96998 * 119.99572 * 359.97438 * 16 15 12 42 42 H 1.09000 * 109.47335 * 300.00375 * 19 17 16 43 43 H 1.09002 * 109.46716 * 60.00361 * 19 17 16 44 44 H 1.08004 * 119.93600 * 359.45385 * 22 21 20 45 45 H 1.08003 * 119.81682 * 179.73325 * 23 22 21 46 46 H 1.07997 * 120.09237 * 179.97438 * 24 23 22 47 47 H 1.07999 * 120.04417 * 180.02562 * 25 24 23 48 48 H 1.09003 * 110.50683 * 61.39913 * 27 26 25 49 49 H 1.09004 * 110.62784 * 298.74993 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4230 1.8928 -1.9759 6 6 3.1563 2.9877 -1.3518 7 7 4.1989 2.9694 -0.5487 8 14 3.0558 4.2520 -2.7232 9 1 2.3781 5.4742 -2.2210 10 1 4.4261 4.5977 -3.1791 11 1 2.2832 3.6891 -3.8597 12 6 2.3857 2.0283 1.2620 13 1 2.7711 3.0275 1.0593 14 6 3.4623 1.1995 1.9655 15 6 1.1519 2.1303 2.1610 16 7 0.0789 2.8208 1.4411 17 6 -1.1109 3.0260 2.0401 18 8 -1.2932 2.6394 3.1750 19 6 -2.2145 3.7369 1.2998 20 7 -3.3959 3.8344 2.1605 21 6 -4.4066 2.8734 2.2059 22 6 -4.5494 1.6684 1.5205 23 6 -5.6536 0.8721 1.7427 24 6 -6.6238 1.2589 2.6493 25 6 -6.4866 2.4519 3.3372 26 6 -5.3854 3.2486 3.1172 27 6 -4.9466 4.5767 3.6898 28 6 -3.6336 4.8623 2.9926 29 8 -2.9286 5.8359 3.1547 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 4.9153 3.6122 -0.6692 36 1 4.3413 1.1269 1.3251 37 1 3.7353 1.6807 2.9047 38 1 3.0769 0.2003 2.1684 39 1 0.8192 1.1294 2.4362 40 1 1.4039 2.6899 3.0618 41 1 0.2249 3.1304 0.5335 42 1 -1.8817 4.7379 1.0253 43 1 -2.4662 3.1777 0.3986 44 1 -3.7961 1.3594 0.8109 45 1 -5.7613 -0.0587 1.2056 46 1 -7.4866 0.6320 2.8194 47 1 -7.2418 2.7572 4.0462 48 1 -4.7976 4.4977 4.7667 49 1 -5.6771 5.3531 3.4622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155451805.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:08 Heat of formation + Delta-G solvation = -7.970417 kcal Electronic energy + Delta-G solvation = -31280.093480 eV Core-core repulsion = 27208.212556 eV Total energy + Delta-G solvation = -4071.880925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.69690 -39.22450 -38.45554 -36.97475 -35.85081 -33.70207 -33.20275 -31.94786 -31.21098 -30.45997 -28.40654 -28.20412 -27.59677 -25.04339 -23.98546 -22.64849 -21.90779 -21.76052 -20.84241 -19.80336 -19.25893 -17.48820 -17.26838 -17.02665 -16.78896 -16.00493 -15.73610 -15.45393 -15.10267 -14.73783 -14.48237 -14.32148 -14.09980 -13.83408 -13.71194 -13.26355 -13.25077 -13.16387 -12.74289 -12.59404 -12.48542 -12.34833 -12.05108 -11.89346 -11.85766 -11.53684 -11.14454 -11.12274 -11.00548 -10.87095 -10.86206 -10.73281 -10.33255 -10.19951 -10.11338 -9.69863 -9.50976 -9.48803 -9.05674 -8.57285 -8.45756 -8.04885 -6.71158 -5.93035 -3.43757 1.02914 1.14404 2.30122 2.56329 2.92520 3.27606 3.36032 3.37594 3.54797 3.79332 3.97940 4.20028 4.37186 4.61835 4.76322 4.90604 5.02260 5.11153 5.13724 5.20130 5.21524 5.22021 5.28395 5.35354 5.53147 5.66245 5.85368 5.88672 5.99508 6.13772 6.15920 6.20263 6.30171 6.32500 6.39266 6.43764 6.48221 6.56725 6.58913 6.62222 6.78292 6.85730 6.95100 6.99700 7.09627 7.42506 7.51684 7.71228 7.77737 8.05921 8.38825 8.62775 9.10786 9.72070 10.29821 11.13025 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.003146 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.871276 B = 8897.844719 C = 9375.293637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.266 4.266 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.889 5.889 8 Si 0.896 3.104 9 H -0.286 1.286 10 H -0.291 1.291 11 H -0.278 1.278 12 C 0.174 3.826 13 H 0.102 0.898 14 C -0.144 4.144 15 C 0.104 3.896 16 N -0.696 5.696 17 C 0.490 3.510 18 O -0.547 6.547 19 C 0.087 3.913 20 N -0.531 5.531 21 C 0.159 3.841 22 C -0.134 4.134 23 C -0.084 4.084 24 C -0.146 4.146 25 C -0.068 4.068 26 C -0.145 4.145 27 C -0.110 4.110 28 C 0.531 3.469 29 O -0.499 6.499 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.049 0.951 33 H 0.037 0.963 34 H 0.041 0.959 35 H 0.255 0.745 36 H 0.075 0.925 37 H 0.034 0.966 38 H 0.031 0.969 39 H 0.053 0.947 40 H 0.051 0.949 41 H 0.412 0.588 42 H 0.119 0.881 43 H 0.114 0.886 44 H 0.125 0.875 45 H 0.129 0.871 46 H 0.127 0.873 47 H 0.127 0.873 48 H 0.123 0.877 49 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.215 -2.010 4.836 19.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.013 3.987 3 N -0.303 5.303 4 C -0.396 4.396 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.531 5.531 8 Si 0.726 3.274 9 H -0.213 1.213 10 H -0.217 1.217 11 H -0.204 1.204 12 C 0.067 3.933 13 H 0.120 0.880 14 C -0.203 4.203 15 C -0.022 4.022 16 N -0.347 5.347 17 C 0.273 3.727 18 O -0.425 6.425 19 C -0.039 4.039 20 N -0.252 5.252 21 C 0.063 3.937 22 C -0.155 4.155 23 C -0.102 4.102 24 C -0.165 4.165 25 C -0.086 4.086 26 C -0.147 4.147 27 C -0.149 4.149 28 C 0.320 3.680 29 O -0.373 6.373 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.068 0.932 33 H 0.055 0.945 34 H 0.059 0.941 35 H 0.065 0.935 36 H 0.094 0.906 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.249 0.751 42 H 0.137 0.863 43 H 0.132 0.868 44 H 0.143 0.857 45 H 0.147 0.853 46 H 0.145 0.855 47 H 0.145 0.855 48 H 0.140 0.860 49 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -18.609 -1.568 5.669 19.517 hybrid contribution 0.354 0.664 -1.242 1.452 sum -18.256 -0.904 4.427 18.806 Atomic orbital electron populations 1.22424 1.00176 0.98965 1.01261 1.20763 0.91611 0.87519 0.98776 1.43876 1.75942 1.08235 1.02282 1.19083 1.07899 1.18879 0.93726 0.91823 1.25190 0.94472 1.01308 0.97797 1.69999 1.07215 1.36204 1.39664 0.86400 0.77057 0.81884 0.82048 1.21288 1.21730 1.20369 1.20530 0.89002 0.99511 0.84294 0.87983 1.22000 1.01049 0.98117 0.99158 1.22195 0.89053 0.95546 0.95385 1.45901 1.11953 1.57751 1.19069 1.20711 0.84059 0.80535 0.87381 1.90680 1.81707 1.51827 1.18302 1.21532 0.84670 1.04233 0.93439 1.45390 1.19405 1.20132 1.40257 1.18144 0.88078 0.90778 0.96708 1.20416 0.99994 0.92801 1.02311 1.20877 0.92962 0.98925 0.97455 1.21026 1.00057 0.96991 0.98420 1.20225 0.95820 0.93574 0.98995 1.19777 0.96758 0.97848 1.00357 1.21014 0.95479 0.95960 1.02415 1.20616 0.87409 0.81397 0.78535 1.90792 1.53606 1.29090 1.63843 0.93469 0.94822 0.93230 0.94474 0.94099 0.93462 0.90573 0.94690 0.94992 0.92844 0.93046 0.75108 0.86340 0.86764 0.85719 0.85276 0.85480 0.85496 0.85967 0.86071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.87 9.95 37.16 0.37 -2.51 16 2 C 0.14 2.73 5.75 -4.04 -0.02 2.70 16 3 N -0.58 -12.69 1.88 -165.66 -0.31 -13.00 16 4 C -0.27 -6.40 9.07 -15.06 -0.14 -6.54 16 5 H 0.06 1.53 7.89 -52.49 -0.41 1.12 16 6 C 0.01 0.32 4.86 -17.43 -0.08 0.24 16 7 N -0.89 -23.31 10.90 55.49 0.60 -22.70 16 8 Si 0.90 19.94 29.59 -169.99 -5.03 14.91 16 9 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 12 C 0.17 3.67 1.95 -67.93 -0.13 3.54 16 13 H 0.10 2.47 5.94 -51.93 -0.31 2.16 16 14 C -0.14 -2.91 9.05 37.16 0.34 -2.57 16 15 C 0.10 2.00 4.36 -4.04 -0.02 1.98 16 16 N -0.70 -12.43 4.28 -60.29 -0.26 -12.68 16 17 C 0.49 8.60 7.85 -10.98 -0.09 8.51 16 18 O -0.55 -11.46 16.43 5.56 0.09 -11.37 16 19 C 0.09 1.22 6.22 -5.19 -0.03 1.18 16 20 N -0.53 -7.54 2.22 -114.54 -0.25 -7.79 16 21 C 0.16 2.01 6.69 -83.69 -0.56 1.45 16 22 C -0.13 -1.52 9.74 -39.27 -0.38 -1.90 16 23 C -0.08 -0.77 10.02 -39.67 -0.40 -1.16 16 24 C -0.15 -1.20 10.07 -39.50 -0.40 -1.60 16 25 C -0.07 -0.58 10.04 -39.73 -0.40 -0.98 16 26 C -0.14 -1.56 6.35 -104.37 -0.66 -2.22 16 27 C -0.11 -1.14 6.88 -28.49 -0.20 -1.33 16 28 C 0.53 7.84 8.23 -10.83 -0.09 7.75 16 29 O -0.50 -9.01 17.67 5.55 0.10 -8.91 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.87 5.32 -51.93 -0.28 0.60 16 33 H 0.04 0.71 6.29 -51.93 -0.33 0.38 16 34 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 35 H 0.26 6.62 8.31 -40.82 -0.34 6.28 16 36 H 0.08 1.73 7.69 -51.93 -0.40 1.34 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.03 0.59 6.56 -51.93 -0.34 0.25 16 39 H 0.05 1.05 6.98 -51.93 -0.36 0.69 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.41 7.39 7.74 -40.82 -0.32 7.07 16 42 H 0.12 1.58 7.95 -51.93 -0.41 1.17 16 43 H 0.11 1.28 7.61 -51.93 -0.40 0.89 16 44 H 0.12 1.35 7.70 -52.48 -0.40 0.95 16 45 H 0.13 0.90 8.06 -52.48 -0.42 0.47 16 46 H 0.13 0.72 8.06 -52.49 -0.42 0.30 16 47 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 48 H 0.12 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 398.44 15.07 6.00 6.00 Total: -1.00 -30.82 398.44 -9.26 -40.08 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -7.32 Total: 8.90 kcal Atomic # 6 Polarization: 9.44 SS G_CDS: -2.89 Total: 6.55 kcal Atomic # 7 Polarization: -55.96 SS G_CDS: -0.22 Total: -56.18 kcal Atomic # 8 Polarization: -20.47 SS G_CDS: 0.19 Total: -20.28 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.03 Total: 14.91 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.82 -9.26 -40.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155451805.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.111 kcal (2) G-P(sol) polarization free energy of solvation -30.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds