Wall clock time and date at job start Wed Apr 1 2020 05:05:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46501 * 109.47140 * 2 1 4 4 C 1.36939 * 119.99897 * 275.91577 * 3 2 1 5 5 H 1.07999 * 119.99893 * 34.09388 * 4 3 2 6 6 C 1.38809 * 119.99809 * 214.08822 * 4 3 2 7 7 N 1.31622 * 120.00104 * 17.01262 * 6 4 3 8 8 Si 1.86798 * 120.00296 * 197.01136 * 6 4 3 9 9 H 1.48500 * 109.46923 * 90.00136 * 8 6 4 10 10 H 1.48497 * 109.47358 * 210.00321 * 8 6 4 11 11 H 1.48508 * 109.47039 * 330.00496 * 8 6 4 12 12 C 1.46499 * 120.00201 * 95.90853 * 3 2 1 13 13 H 1.08997 * 109.47529 * 177.15394 * 12 3 2 14 14 C 1.53005 * 109.46577 * 57.15737 * 12 3 2 15 15 C 1.52998 * 109.47468 * 297.16022 * 12 3 2 16 16 N 1.46506 * 109.47045 * 304.99585 * 15 12 3 17 17 C 1.34776 * 119.99760 * 179.97438 * 16 15 12 18 18 O 1.21274 * 120.00440 * 0.02562 * 17 16 15 19 19 C 1.50705 * 119.99585 * 179.97438 * 17 16 15 20 20 N 1.46496 * 109.47185 * 180.02562 * 19 17 16 21 21 C 1.39532 * 123.87809 * 269.72995 * 20 19 17 22 22 C 1.39366 * 130.82194 * 0.60486 * 21 20 19 23 23 C 1.37938 * 120.13276 * 179.70017 * 22 21 20 24 24 C 1.38305 * 120.37624 * 359.75006 * 23 22 21 25 25 C 1.38397 * 119.82332 * 0.02562 * 24 23 22 26 26 C 1.37683 * 119.91313 * 359.97438 * 25 24 23 27 27 C 1.51136 * 132.85112 * 179.97438 * 26 25 24 28 28 C 1.34369 * 123.87876 * 90.02199 * 20 19 17 29 29 O 1.21291 * 126.43937 * 359.95042 * 28 20 19 30 30 H 1.08996 * 109.47131 * 59.99902 * 1 2 3 31 31 H 1.09002 * 109.46663 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46632 * 299.99630 * 1 2 3 33 33 H 1.08996 * 109.47131 * 120.00098 * 2 1 3 34 34 H 1.08994 * 109.46724 * 240.00330 * 2 1 3 35 35 H 0.97002 * 120.00193 * 179.97438 * 7 6 4 36 36 H 1.09002 * 109.46946 * 60.00273 * 14 12 3 37 37 H 1.09003 * 109.46933 * 180.02562 * 14 12 3 38 38 H 1.09001 * 109.47392 * 299.99488 * 14 12 3 39 39 H 1.09000 * 109.47239 * 64.99675 * 15 12 3 40 40 H 1.09003 * 109.47256 * 184.99457 * 15 12 3 41 41 H 0.96998 * 119.99572 * 359.97438 * 16 15 12 42 42 H 1.09000 * 109.47335 * 300.00375 * 19 17 16 43 43 H 1.09002 * 109.46716 * 60.00361 * 19 17 16 44 44 H 1.08004 * 119.93600 * 359.45385 * 22 21 20 45 45 H 1.08003 * 119.81682 * 179.73325 * 23 22 21 46 46 H 1.07997 * 120.09237 * 179.97438 * 24 23 22 47 47 H 1.07999 * 120.04417 * 180.02562 * 25 24 23 48 48 H 1.09003 * 110.50683 * 61.39913 * 27 26 25 49 49 H 1.09004 * 110.62784 * 298.74993 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4230 1.8928 -1.9759 6 6 3.1563 2.9877 -1.3518 7 7 4.1989 2.9694 -0.5487 8 14 3.0558 4.2520 -2.7232 9 1 2.3781 5.4742 -2.2210 10 1 4.4261 4.5977 -3.1791 11 1 2.2832 3.6891 -3.8597 12 6 2.3857 2.0283 1.2620 13 1 2.7711 3.0275 1.0593 14 6 3.4623 1.1995 1.9655 15 6 1.1519 2.1303 2.1610 16 7 0.0789 2.8208 1.4411 17 6 -1.1109 3.0260 2.0401 18 8 -1.2932 2.6394 3.1750 19 6 -2.2145 3.7369 1.2998 20 7 -3.3959 3.8344 2.1605 21 6 -4.4066 2.8734 2.2059 22 6 -4.5494 1.6684 1.5205 23 6 -5.6536 0.8721 1.7427 24 6 -6.6238 1.2589 2.6493 25 6 -6.4866 2.4519 3.3372 26 6 -5.3854 3.2486 3.1172 27 6 -4.9466 4.5767 3.6898 28 6 -3.6336 4.8623 2.9926 29 8 -2.9286 5.8359 3.1547 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8901 33 1 1.8934 -0.5138 0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 4.9153 3.6122 -0.6692 36 1 4.3413 1.1269 1.3251 37 1 3.7353 1.6807 2.9047 38 1 3.0769 0.2003 2.1684 39 1 0.8192 1.1294 2.4362 40 1 1.4039 2.6899 3.0618 41 1 0.2249 3.1304 0.5335 42 1 -1.8817 4.7379 1.0253 43 1 -2.4662 3.1777 0.3986 44 1 -3.7961 1.3594 0.8109 45 1 -5.7613 -0.0587 1.2056 46 1 -7.4866 0.6320 2.8194 47 1 -7.2418 2.7572 4.0462 48 1 -4.7976 4.4977 4.7667 49 1 -5.6771 5.3531 3.4622 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155451805.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:06 Heat of formation + Delta-G solvation = -24.607888 kcal Electronic energy + Delta-G solvation = -31280.814935 eV Core-core repulsion = 27208.212556 eV Total energy + Delta-G solvation = -4072.602380 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.64821 -40.63930 -39.43234 -38.62363 -36.85791 -35.29309 -34.12628 -33.73714 -32.74839 -31.33293 -29.97329 -29.25493 -28.63403 -26.49490 -25.78694 -23.51081 -23.33975 -22.66474 -22.03185 -21.15276 -20.82279 -18.90654 -18.39518 -18.30870 -18.00342 -17.01543 -16.88109 -16.78191 -16.53799 -16.34948 -15.89899 -15.40829 -15.26562 -15.04121 -14.78580 -14.70533 -14.30989 -14.15914 -14.06926 -13.97438 -13.89430 -13.55047 -13.33080 -13.31523 -13.06515 -12.80525 -12.75660 -12.73083 -12.56201 -12.41200 -12.04880 -11.88892 -11.87237 -11.84003 -11.37997 -11.28090 -11.18841 -10.88288 -10.44449 -10.00285 -9.76686 -8.94052 -8.53135 -7.82732 -5.34567 0.23473 0.42801 1.25121 1.49245 1.52529 1.53793 1.59028 1.59421 2.35661 2.53787 2.88448 3.11376 3.31707 3.39511 3.61911 3.73792 3.84096 3.90989 4.08323 4.13103 4.22004 4.35591 4.42172 4.45551 4.46601 4.53546 4.62436 4.65258 4.77277 4.81099 4.85765 4.89714 4.94946 4.96869 5.04848 5.11474 5.21435 5.33079 5.44183 5.47078 5.56449 5.58431 5.62509 5.68683 5.75065 5.77239 5.82019 6.13122 6.49036 6.57282 6.75115 7.17745 7.24033 7.91546 8.44587 9.20768 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013505 B = 0.003146 C = 0.002986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2072.871276 B = 8897.844719 C = 9375.293637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.137 3.863 3 N -0.590 5.590 4 C -0.260 4.260 5 H 0.065 0.935 6 C -0.032 4.032 7 N -0.916 5.916 8 Si 0.951 3.049 9 H -0.286 1.286 10 H -0.304 1.304 11 H -0.270 1.270 12 C 0.181 3.819 13 H 0.071 0.929 14 C -0.135 4.135 15 C 0.118 3.882 16 N -0.693 5.693 17 C 0.492 3.508 18 O -0.582 6.582 19 C 0.089 3.911 20 N -0.535 5.535 21 C 0.121 3.879 22 C -0.148 4.148 23 C -0.089 4.089 24 C -0.137 4.137 25 C -0.066 4.066 26 C -0.149 4.149 27 C -0.100 4.100 28 C 0.514 3.486 29 O -0.548 6.548 30 H 0.044 0.956 31 H 0.056 0.944 32 H 0.042 0.958 33 H 0.042 0.958 34 H 0.032 0.968 35 H 0.248 0.752 36 H 0.047 0.953 37 H 0.048 0.952 38 H 0.045 0.955 39 H 0.053 0.947 40 H 0.045 0.955 41 H 0.413 0.587 42 H 0.122 0.878 43 H 0.142 0.858 44 H 0.121 0.879 45 H 0.151 0.849 46 H 0.159 0.841 47 H 0.159 0.841 48 H 0.135 0.865 49 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.559 -3.238 4.891 23.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.012 3.988 3 N -0.312 5.312 4 C -0.390 4.390 5 H 0.083 0.917 6 C -0.229 4.229 7 N -0.560 5.560 8 Si 0.781 3.219 9 H -0.213 1.213 10 H -0.231 1.231 11 H -0.195 1.195 12 C 0.074 3.926 13 H 0.089 0.911 14 C -0.194 4.194 15 C -0.008 4.008 16 N -0.344 5.344 17 C 0.277 3.723 18 O -0.462 6.462 19 C -0.036 4.036 20 N -0.255 5.255 21 C 0.026 3.974 22 C -0.169 4.169 23 C -0.107 4.107 24 C -0.156 4.156 25 C -0.084 4.084 26 C -0.152 4.152 27 C -0.138 4.138 28 C 0.306 3.694 29 O -0.426 6.426 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.050 0.950 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.067 0.933 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.063 0.937 41 H 0.249 0.751 42 H 0.140 0.860 43 H 0.160 0.840 44 H 0.139 0.861 45 H 0.169 0.831 46 H 0.177 0.823 47 H 0.176 0.824 48 H 0.152 0.848 49 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -22.008 -2.843 5.703 22.912 hybrid contribution 1.318 0.907 -1.246 2.028 sum -20.689 -1.937 4.456 21.252 Atomic orbital electron populations 1.22219 0.97856 1.00356 1.00792 1.20858 0.93252 0.86118 0.98577 1.43991 1.76088 1.09203 1.01912 1.19272 1.07133 1.18409 0.94214 0.91691 1.25745 0.94492 1.03036 0.99669 1.70134 1.07799 1.36772 1.41252 0.85531 0.76101 0.80057 0.80248 1.21304 1.23149 1.19476 1.20344 0.89811 0.97985 0.84506 0.91099 1.21870 0.99608 0.98941 0.99020 1.21895 0.88679 0.95543 0.94684 1.45857 1.11959 1.57639 1.18931 1.21272 0.84297 0.79745 0.86965 1.90653 1.82312 1.53361 1.19908 1.21546 0.83915 1.04223 0.93960 1.45504 1.19457 1.20554 1.40034 1.18460 0.88573 0.91524 0.98841 1.20600 1.00931 0.92852 1.02538 1.21222 0.92373 0.99377 0.97736 1.21480 1.00365 0.96859 0.96886 1.20633 0.95513 0.93155 0.99124 1.20004 0.97122 0.98085 0.99966 1.21043 0.93576 0.96827 1.02382 1.21424 0.88583 0.80849 0.78545 1.90749 1.55453 1.30905 1.65496 0.93636 0.92491 0.93885 0.93966 0.94993 0.94303 0.93430 0.93321 0.93593 0.92881 0.93701 0.75055 0.86015 0.84039 0.86101 0.83098 0.82305 0.82361 0.84771 0.83216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.93 9.95 71.98 0.72 -4.21 16 2 C 0.14 5.24 5.75 86.38 0.50 5.73 16 3 N -0.59 -25.69 1.88 -678.04 -1.28 -26.96 16 4 C -0.26 -12.48 9.07 84.03 0.76 -11.72 16 5 H 0.07 3.08 7.89 -2.91 -0.02 3.05 16 6 C -0.03 -1.60 4.86 84.86 0.41 -1.19 16 7 N -0.92 -49.21 10.90 21.65 0.24 -48.98 16 8 Si 0.95 41.45 29.59 68.60 2.03 43.48 16 9 H -0.29 -12.37 7.11 99.48 0.71 -11.66 16 10 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 11 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 12 C 0.18 7.73 1.95 44.99 0.09 7.82 16 13 H 0.07 3.53 5.94 -2.39 -0.01 3.52 16 14 C -0.14 -5.49 9.05 71.98 0.65 -4.84 16 15 C 0.12 4.56 4.36 86.38 0.38 4.94 16 16 N -0.69 -24.88 4.28 -463.05 -1.98 -26.86 16 17 C 0.49 17.38 7.85 87.66 0.69 18.06 16 18 O -0.58 -24.64 16.43 -3.01 -0.05 -24.69 16 19 C 0.09 2.50 6.22 85.64 0.53 3.03 16 20 N -0.53 -15.09 2.22 -634.90 -1.41 -16.50 16 21 C 0.12 2.92 6.69 38.35 0.26 3.17 16 22 C -0.15 -3.12 9.74 22.47 0.22 -2.91 16 23 C -0.09 -1.36 10.02 22.21 0.22 -1.14 16 24 C -0.14 -1.69 10.07 22.32 0.22 -1.47 16 25 C -0.07 -0.89 10.04 22.18 0.22 -0.67 16 26 C -0.15 -2.89 6.35 -19.70 -0.13 -3.02 16 27 C -0.10 -1.91 6.88 29.46 0.20 -1.71 16 28 C 0.51 15.26 8.23 87.94 0.72 15.99 16 29 O -0.55 -20.42 17.67 -3.06 -0.05 -20.47 16 30 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 32 H 0.04 1.44 5.32 -2.39 -0.01 1.43 16 33 H 0.04 1.56 6.29 -2.39 -0.02 1.54 16 34 H 0.03 1.27 8.09 -2.39 -0.02 1.25 16 35 H 0.25 13.24 8.31 -92.71 -0.77 12.47 16 36 H 0.05 2.20 7.69 -2.39 -0.02 2.18 16 37 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 38 H 0.05 1.70 6.56 -2.39 -0.02 1.68 16 39 H 0.05 2.06 6.98 -2.39 -0.02 2.05 16 40 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 41 H 0.41 14.84 7.74 -92.71 -0.72 14.12 16 42 H 0.12 3.31 7.95 -2.39 -0.02 3.29 16 43 H 0.14 3.08 7.61 -2.39 -0.02 3.06 16 44 H 0.12 2.50 7.70 -2.91 -0.02 2.48 16 45 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 46 H 0.16 0.96 8.06 -2.91 -0.02 0.93 16 47 H 0.16 1.11 8.06 -2.91 -0.02 1.09 16 48 H 0.13 2.25 8.14 -2.39 -0.02 2.23 16 49 H 0.15 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -68.51 398.44 4.42 -64.09 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: 0.25 Total: 31.03 kcal Atomic # 6 Polarization: 19.20 SS G_CDS: 6.67 Total: 25.87 kcal Atomic # 7 Polarization: -114.88 SS G_CDS: -4.43 Total: -119.31 kcal Atomic # 8 Polarization: -45.06 SS G_CDS: -0.10 Total: -45.16 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.48 kcal Total: -68.51 4.42 -64.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155451805.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.481 kcal (2) G-P(sol) polarization free energy of solvation -68.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.089 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds