Wall clock time and date at job start Wed Apr 1 2020 05:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46906 * 2 1 4 4 C 1.36931 * 119.99928 * 84.37287 * 3 2 1 5 5 H 1.08003 * 120.00263 * 211.27056 * 4 3 2 6 6 C 1.38808 * 120.00360 * 31.26707 * 4 3 2 7 7 N 1.31620 * 120.00396 * 202.41445 * 6 4 3 8 8 Si 1.86807 * 119.99749 * 22.42081 * 6 4 3 9 9 H 1.48498 * 109.46776 * 264.49451 * 8 6 4 10 10 H 1.48500 * 109.46842 * 24.49811 * 8 6 4 11 11 H 1.48502 * 109.46930 * 144.49471 * 8 6 4 12 12 C 1.46497 * 119.99844 * 264.36609 * 3 2 1 13 13 H 1.09008 * 109.46793 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.47088 * 60.00427 * 12 3 2 15 15 C 1.52996 * 109.47578 * 300.00206 * 12 3 2 16 16 N 1.46503 * 109.47115 * 305.00035 * 15 12 3 17 17 C 1.34779 * 119.99928 * 180.02562 * 16 15 12 18 18 O 1.21283 * 119.99875 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99628 * 180.02562 * 17 16 15 20 20 C 1.53009 * 109.46815 * 179.97438 * 19 17 16 21 21 H 1.08992 * 110.07679 * 55.10184 * 20 19 17 22 22 N 1.46732 * 110.09815 * 293.54380 * 20 19 17 23 23 C 1.34418 * 108.75417 * 240.80094 * 22 20 19 24 24 O 1.21552 * 124.85938 * 179.97438 * 23 22 20 25 25 C 1.47549 * 110.28546 * 0.02562 * 23 22 20 26 26 C 1.39620 * 132.34250 * 179.97438 * 25 23 22 27 27 C 1.37933 * 119.82880 * 180.02562 * 26 25 23 28 28 C 1.38389 * 120.31983 * 0.02562 * 27 26 25 29 29 C 1.38471 * 120.18719 * 359.97438 * 28 27 26 30 30 C 1.37581 * 119.95678 * 0.02562 * 29 28 27 31 31 H 1.08999 * 109.47246 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47403 * 299.99798 * 1 2 3 33 33 H 1.08998 * 109.47636 * 59.99881 * 1 2 3 34 34 H 1.09001 * 109.46964 * 240.00328 * 2 1 3 35 35 H 1.08994 * 109.47180 * 119.99962 * 2 1 3 36 36 H 0.97001 * 119.99980 * 179.97438 * 7 6 4 37 37 H 1.08998 * 109.47100 * 179.97438 * 14 12 3 38 38 H 1.08998 * 109.47340 * 299.99867 * 14 12 3 39 39 H 1.09001 * 109.47117 * 59.99655 * 14 12 3 40 40 H 1.08996 * 109.46848 * 64.99847 * 15 12 3 41 41 H 1.09000 * 109.47485 * 185.00210 * 15 12 3 42 42 H 0.97000 * 119.99957 * 0.02562 * 16 15 12 43 43 H 1.08996 * 109.47491 * 299.99864 * 19 17 16 44 44 H 1.08998 * 109.47504 * 60.00017 * 19 17 16 45 45 H 0.97001 * 125.62219 * 60.78354 * 22 20 19 46 46 H 1.08003 * 120.08714 * 359.97343 * 26 25 23 47 47 H 1.08003 * 119.84513 * 180.02562 * 27 26 25 48 48 H 1.07994 * 119.90814 * 180.02562 * 28 27 26 49 49 H 1.08002 * 120.02126 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1368 2.0655 1.1801 5 1 1.9957 3.1361 1.2002 6 6 2.4382 1.3833 2.3508 7 7 2.1303 1.9096 3.5172 8 14 3.2812 -0.2819 2.2707 9 1 2.2596 -1.3575 2.3383 10 1 4.0350 -0.3942 0.9962 11 1 4.2190 -0.4174 3.4142 12 6 2.3798 2.0303 -1.2626 13 1 2.7190 3.0471 -1.0643 14 6 1.1587 2.0700 -2.1836 15 6 3.5029 1.2413 -1.9385 16 7 4.6280 1.1011 -1.0106 17 6 5.7376 0.4380 -1.3923 18 8 5.8045 -0.0429 -2.5037 19 6 6.8946 0.2933 -0.4377 20 6 8.0179 -0.4957 -1.1136 21 1 8.2963 -0.0195 -2.0537 22 7 7.5881 -1.8775 -1.3562 23 6 8.4049 -2.7082 -0.6855 24 8 8.3125 -3.9202 -0.6816 25 6 9.4290 -1.9382 0.0462 26 6 10.4852 -2.3263 0.8728 27 6 11.3026 -1.3690 1.4367 28 6 11.0805 -0.0260 1.1876 29 6 10.0350 0.3667 0.3690 30 6 9.2138 -0.5801 -0.1985 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.3406 1.4326 4.3353 37 1 1.4276 2.5533 -3.1228 38 1 0.8199 1.0532 -2.3818 39 1 0.3585 2.6322 -1.7021 40 1 3.1362 0.2533 -2.2168 41 1 3.8328 1.7714 -2.8319 42 1 4.5743 1.4854 -0.1217 43 1 7.2611 1.2811 -0.1585 44 1 6.5647 -0.2375 0.4553 45 1 6.8381 -2.1472 -1.9091 46 1 10.6612 -3.3733 1.0707 47 1 12.1199 -1.6690 2.0758 48 1 11.7248 0.7179 1.6323 49 1 9.8643 1.4156 0.1761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001155958443.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:16 Heat of formation + Delta-G solvation = -7.314905 kcal Electronic energy + Delta-G solvation = -31037.751052 eV Core-core repulsion = 26965.898552 eV Total energy + Delta-G solvation = -4071.852500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.45957 -39.43864 -38.15316 -37.42460 -36.16694 -34.08837 -32.33111 -31.79316 -31.16325 -30.82996 -30.24691 -28.91404 -26.28150 -24.42033 -24.05662 -23.62839 -22.48526 -21.54036 -20.63970 -20.04395 -19.40695 -17.45978 -17.05903 -16.94776 -16.80038 -16.23552 -15.92801 -15.86924 -15.47563 -15.12053 -14.74903 -14.51699 -14.27241 -13.90520 -13.74756 -13.25115 -13.17783 -13.01362 -12.98211 -12.76911 -12.64546 -12.45573 -12.18409 -12.12122 -12.02914 -11.82943 -11.59479 -11.47367 -11.29462 -10.90549 -10.77400 -10.49946 -10.09313 -10.05155 -9.86981 -9.73369 -9.50003 -9.41730 -9.24211 -9.02226 -8.63762 -8.63478 -7.10429 -6.11477 -3.49312 0.53882 0.99584 2.65554 2.80740 3.11981 3.21415 3.32708 3.39668 3.45027 3.61651 3.89404 4.20373 4.38128 4.54303 4.66547 4.70941 4.76410 4.96071 5.01142 5.13781 5.16306 5.20037 5.34559 5.37032 5.39666 5.64081 5.66270 5.68724 5.83392 5.87750 5.94285 5.95611 6.01456 6.08646 6.09222 6.15232 6.21331 6.30284 6.48295 6.50784 6.58864 6.64346 6.69195 6.75602 6.84823 6.96068 7.06406 7.86452 7.88078 8.14808 8.21623 8.46336 8.82963 9.58213 9.96246 11.03804 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.003363 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.927967 B = 8324.355614 C = 8972.993070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.134 3.866 3 N -0.599 5.599 4 C -0.272 4.272 5 H 0.082 0.918 6 C 0.035 3.965 7 N -0.897 5.897 8 Si 0.879 3.121 9 H -0.290 1.290 10 H -0.264 1.264 11 H -0.307 1.307 12 C 0.159 3.841 13 H 0.078 0.922 14 C -0.158 4.158 15 C 0.103 3.897 16 N -0.702 5.702 17 C 0.512 3.488 18 O -0.562 6.562 19 C -0.152 4.152 20 C 0.190 3.810 21 H 0.112 0.888 22 N -0.705 5.705 23 C 0.558 3.442 24 O -0.532 6.532 25 C -0.155 4.155 26 C -0.048 4.048 27 C -0.127 4.127 28 C -0.088 4.088 29 C -0.099 4.099 30 C -0.078 4.078 31 H 0.035 0.965 32 H 0.061 0.939 33 H 0.050 0.950 34 H 0.041 0.959 35 H 0.042 0.958 36 H 0.263 0.737 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.414 0.586 43 H 0.112 0.888 44 H 0.102 0.898 45 H 0.431 0.569 46 H 0.132 0.868 47 H 0.132 0.868 48 H 0.134 0.866 49 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.595 -0.220 -7.250 16.298 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.009 3.991 3 N -0.322 5.322 4 C -0.400 4.400 5 H 0.100 0.900 6 C -0.165 4.165 7 N -0.538 5.538 8 Si 0.711 3.289 9 H -0.219 1.219 10 H -0.189 1.189 11 H -0.236 1.236 12 C 0.051 3.949 13 H 0.096 0.904 14 C -0.218 4.218 15 C -0.023 4.023 16 N -0.352 5.352 17 C 0.297 3.703 18 O -0.442 6.442 19 C -0.193 4.193 20 C 0.084 3.916 21 H 0.130 0.870 22 N -0.362 5.362 23 C 0.345 3.655 24 O -0.410 6.410 25 C -0.158 4.158 26 C -0.067 4.067 27 C -0.145 4.145 28 C -0.107 4.107 29 C -0.117 4.117 30 C -0.079 4.079 31 H 0.054 0.946 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.073 0.927 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.080 0.920 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.252 0.748 43 H 0.130 0.870 44 H 0.120 0.880 45 H 0.275 0.725 46 H 0.150 0.850 47 H 0.150 0.850 48 H 0.152 0.848 49 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.603 -1.151 -7.799 16.595 hybrid contribution -0.123 -0.916 0.472 1.038 sum 14.480 -2.068 -7.327 16.359 Atomic orbital electron populations 1.22309 0.98724 0.99338 1.02222 1.21039 0.92890 0.86676 0.98470 1.44217 1.74248 1.11227 1.02481 1.18819 1.43972 0.93562 0.83627 0.90040 1.25286 0.98634 0.97464 0.95136 1.69861 1.46826 1.39712 0.97439 0.86997 0.79963 0.85290 0.76641 1.21893 1.18934 1.23626 1.20739 0.91256 0.96283 0.86593 0.90364 1.22240 0.99318 1.01563 0.98636 1.21999 0.87316 1.01039 0.91972 1.46005 1.15078 1.55058 1.19087 1.20329 0.83938 0.78246 0.87744 1.90640 1.82233 1.49483 1.21857 1.22078 0.94267 1.03088 0.99877 1.19744 0.90357 0.83533 0.97961 0.87015 1.45959 1.33330 1.06420 1.50477 1.18323 0.81826 0.86335 0.79034 1.90798 1.73648 1.12695 1.63843 1.20489 0.98643 0.94817 1.01846 1.20882 0.92001 1.00449 0.93374 1.21153 0.99981 0.92879 1.00498 1.21344 0.96616 0.96284 0.96432 1.20361 0.94669 0.99195 0.97511 1.20442 0.96038 0.94224 0.97242 0.94636 0.92037 0.93131 0.94059 0.94090 0.92653 0.93411 0.92903 0.92023 0.92298 0.92156 0.74825 0.87030 0.87991 0.72534 0.85021 0.84975 0.84847 0.84826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.12 10.01 37.16 0.37 -2.75 16 2 C 0.13 2.72 4.64 -4.04 -0.02 2.70 16 3 N -0.60 -12.19 1.58 -165.67 -0.26 -12.45 16 4 C -0.27 -6.64 9.60 -15.06 -0.14 -6.79 16 5 H 0.08 2.18 8.06 -52.48 -0.42 1.75 16 6 C 0.04 0.93 5.34 -17.43 -0.09 0.83 16 7 N -0.90 -25.55 13.97 55.49 0.78 -24.78 16 8 Si 0.88 20.65 24.57 -169.99 -4.18 16.47 16 9 H -0.29 -7.11 6.74 56.52 0.38 -6.73 16 10 H -0.26 -5.67 6.06 56.52 0.34 -5.33 16 11 H -0.31 -7.55 7.11 56.52 0.40 -7.15 16 12 C 0.16 2.65 2.87 -67.93 -0.19 2.46 16 13 H 0.08 1.32 7.89 -51.92 -0.41 0.91 16 14 C -0.16 -2.30 8.24 37.16 0.31 -1.99 16 15 C 0.10 1.62 4.94 -4.04 -0.02 1.60 16 16 N -0.70 -11.31 4.77 -60.30 -0.29 -11.60 16 17 C 0.51 7.81 7.71 -10.99 -0.08 7.72 16 18 O -0.56 -9.56 14.84 5.55 0.08 -9.48 16 19 C -0.15 -1.89 5.41 -27.88 -0.15 -2.04 16 20 C 0.19 2.26 3.07 -68.89 -0.21 2.05 16 21 H 0.11 1.22 7.98 -51.93 -0.41 0.81 16 22 N -0.70 -9.98 5.70 -55.86 -0.32 -10.29 16 23 C 0.56 8.72 8.34 -12.62 -0.11 8.62 16 24 O -0.53 -10.06 18.04 5.32 0.10 -9.97 16 25 C -0.15 -2.00 6.26 -105.05 -0.66 -2.66 16 26 C -0.05 -0.52 10.10 -39.18 -0.40 -0.91 16 27 C -0.13 -1.04 10.02 -39.64 -0.40 -1.44 16 28 C -0.09 -0.67 10.05 -39.44 -0.40 -1.07 16 29 C -0.10 -0.85 10.03 -39.74 -0.40 -1.24 16 30 C -0.08 -0.86 5.67 -104.27 -0.59 -1.45 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 33 H 0.05 0.86 6.07 -51.93 -0.32 0.54 16 34 H 0.04 0.77 6.54 -51.93 -0.34 0.44 16 35 H 0.04 0.94 2.23 -51.93 -0.12 0.82 16 36 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 37 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.77 6.60 -51.93 -0.34 0.42 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.06 0.99 6.86 -51.93 -0.36 0.64 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.41 7.09 7.29 -40.82 -0.30 6.80 16 43 H 0.11 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.10 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.43 6.32 8.00 -40.82 -0.33 6.00 16 46 H 0.13 1.30 8.06 -52.48 -0.42 0.88 16 47 H 0.13 0.74 8.06 -52.48 -0.42 0.31 16 48 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 49 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 390.74 15.07 5.89 5.89 Total: -1.00 -31.56 390.74 -8.59 -40.15 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -7.21 Total: 12.43 kcal Atomic # 6 Polarization: 6.81 SS G_CDS: -3.18 Total: 3.63 kcal Atomic # 7 Polarization: -59.03 SS G_CDS: -0.09 Total: -59.12 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: 0.18 Total: -19.45 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -4.18 Total: 16.47 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.56 -8.59 -40.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155958443.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.833 kcal (2) G-P(sol) polarization free energy of solvation -31.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.591 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds