Wall clock time and date at job start Wed Apr 1 2020 05:04:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.46906 * 2 1 4 4 C 1.36931 * 119.99928 * 84.37287 * 3 2 1 5 5 H 1.08003 * 120.00263 * 211.27056 * 4 3 2 6 6 C 1.38808 * 120.00360 * 31.26707 * 4 3 2 7 7 N 1.31620 * 120.00396 * 202.41445 * 6 4 3 8 8 Si 1.86807 * 119.99749 * 22.42081 * 6 4 3 9 9 H 1.48498 * 109.46776 * 264.49451 * 8 6 4 10 10 H 1.48500 * 109.46842 * 24.49811 * 8 6 4 11 11 H 1.48502 * 109.46930 * 144.49471 * 8 6 4 12 12 C 1.46497 * 119.99844 * 264.36609 * 3 2 1 13 13 H 1.09008 * 109.46793 * 180.02562 * 12 3 2 14 14 C 1.53002 * 109.47088 * 60.00427 * 12 3 2 15 15 C 1.52996 * 109.47578 * 300.00206 * 12 3 2 16 16 N 1.46503 * 109.47115 * 305.00035 * 15 12 3 17 17 C 1.34779 * 119.99928 * 180.02562 * 16 15 12 18 18 O 1.21283 * 119.99875 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99628 * 180.02562 * 17 16 15 20 20 C 1.53009 * 109.46815 * 179.97438 * 19 17 16 21 21 H 1.08992 * 110.07679 * 55.10184 * 20 19 17 22 22 N 1.46732 * 110.09815 * 293.54380 * 20 19 17 23 23 C 1.34418 * 108.75417 * 240.80094 * 22 20 19 24 24 O 1.21552 * 124.85938 * 179.97438 * 23 22 20 25 25 C 1.47549 * 110.28546 * 0.02562 * 23 22 20 26 26 C 1.39620 * 132.34250 * 179.97438 * 25 23 22 27 27 C 1.37933 * 119.82880 * 180.02562 * 26 25 23 28 28 C 1.38389 * 120.31983 * 0.02562 * 27 26 25 29 29 C 1.38471 * 120.18719 * 359.97438 * 28 27 26 30 30 C 1.37581 * 119.95678 * 0.02562 * 29 28 27 31 31 H 1.08999 * 109.47246 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47403 * 299.99798 * 1 2 3 33 33 H 1.08998 * 109.47636 * 59.99881 * 1 2 3 34 34 H 1.09001 * 109.46964 * 240.00328 * 2 1 3 35 35 H 1.08994 * 109.47180 * 119.99962 * 2 1 3 36 36 H 0.97001 * 119.99980 * 179.97438 * 7 6 4 37 37 H 1.08998 * 109.47100 * 179.97438 * 14 12 3 38 38 H 1.08998 * 109.47340 * 299.99867 * 14 12 3 39 39 H 1.09001 * 109.47117 * 59.99655 * 14 12 3 40 40 H 1.08996 * 109.46848 * 64.99847 * 15 12 3 41 41 H 1.09000 * 109.47485 * 185.00210 * 15 12 3 42 42 H 0.97000 * 119.99957 * 0.02562 * 16 15 12 43 43 H 1.08996 * 109.47491 * 299.99864 * 19 17 16 44 44 H 1.08998 * 109.47504 * 60.00017 * 19 17 16 45 45 H 0.97001 * 125.62219 * 60.78354 * 22 20 19 46 46 H 1.08003 * 120.08714 * 359.97343 * 26 25 23 47 47 H 1.08003 * 119.84513 * 180.02562 * 27 26 25 48 48 H 1.07994 * 119.90814 * 180.02562 * 28 27 26 49 49 H 1.08002 * 120.02126 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1368 2.0655 1.1801 5 1 1.9957 3.1361 1.2002 6 6 2.4382 1.3833 2.3508 7 7 2.1303 1.9096 3.5172 8 14 3.2812 -0.2819 2.2707 9 1 2.2596 -1.3575 2.3383 10 1 4.0350 -0.3942 0.9962 11 1 4.2190 -0.4174 3.4142 12 6 2.3798 2.0303 -1.2626 13 1 2.7190 3.0471 -1.0643 14 6 1.1587 2.0700 -2.1836 15 6 3.5029 1.2413 -1.9385 16 7 4.6280 1.1011 -1.0106 17 6 5.7376 0.4380 -1.3923 18 8 5.8045 -0.0429 -2.5037 19 6 6.8946 0.2933 -0.4377 20 6 8.0179 -0.4957 -1.1136 21 1 8.2963 -0.0195 -2.0537 22 7 7.5881 -1.8775 -1.3562 23 6 8.4049 -2.7082 -0.6855 24 8 8.3125 -3.9202 -0.6816 25 6 9.4290 -1.9382 0.0462 26 6 10.4852 -2.3263 0.8728 27 6 11.3026 -1.3690 1.4367 28 6 11.0805 -0.0260 1.1876 29 6 10.0350 0.3667 0.3690 30 6 9.2138 -0.5801 -0.1985 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5138 -0.8899 34 1 1.8933 -0.5138 -0.8900 35 1 1.8933 -0.5138 0.8899 36 1 2.3406 1.4326 4.3353 37 1 1.4276 2.5533 -3.1228 38 1 0.8199 1.0532 -2.3818 39 1 0.3585 2.6322 -1.7021 40 1 3.1362 0.2533 -2.2168 41 1 3.8328 1.7714 -2.8319 42 1 4.5743 1.4854 -0.1217 43 1 7.2611 1.2811 -0.1585 44 1 6.5647 -0.2375 0.4553 45 1 6.8381 -2.1472 -1.9091 46 1 10.6612 -3.3733 1.0707 47 1 12.1199 -1.6690 2.0758 48 1 11.7248 0.7179 1.6323 49 1 9.8643 1.4156 0.1761 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001155958443.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:15 Heat of formation + Delta-G solvation = -28.837470 kcal Electronic energy + Delta-G solvation = -31038.684340 eV Core-core repulsion = 26965.898552 eV Total energy + Delta-G solvation = -4072.785788 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -42.42076 -40.66345 -39.11430 -38.91487 -37.23480 -35.51731 -34.02425 -32.96239 -32.44645 -31.64977 -31.18849 -30.57974 -27.43906 -25.78352 -25.14991 -24.82919 -24.05741 -22.37708 -21.65535 -21.26990 -20.76476 -18.76379 -18.53029 -18.09314 -17.83340 -17.64273 -17.27281 -16.86149 -16.71153 -16.46537 -15.89676 -15.53048 -15.22602 -15.11642 -14.84380 -14.79228 -14.63495 -14.43432 -14.13831 -13.93715 -13.81428 -13.57848 -13.54721 -13.38182 -13.20165 -13.06070 -12.88380 -12.70658 -12.50523 -12.38136 -12.14951 -12.04898 -11.78135 -11.46460 -11.21449 -11.18017 -10.92194 -10.58871 -10.55711 -9.99140 -9.92811 -9.82853 -8.88773 -8.15425 -5.47011 -0.28093 0.30042 1.29801 1.40895 1.49395 1.61646 1.67830 2.08703 2.28722 2.42313 2.79585 3.02635 3.06009 3.24837 3.34840 3.62649 3.86979 3.95034 4.02124 4.14167 4.17306 4.23875 4.31924 4.38275 4.40049 4.53255 4.55452 4.65825 4.68254 4.73895 4.74299 4.75270 4.81205 4.95825 4.98362 5.04900 5.14292 5.15555 5.29623 5.35847 5.40931 5.43980 5.51674 5.58976 5.68289 5.81667 5.88941 5.95225 6.21723 6.60077 6.97765 6.99832 7.22617 7.67910 8.08075 9.04059 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012730 B = 0.003363 C = 0.003120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2198.927967 B = 8324.355614 C = 8972.993070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.130 3.870 3 N -0.603 5.603 4 C -0.239 4.239 5 H 0.055 0.945 6 C -0.012 4.012 7 N -0.948 5.948 8 Si 0.934 3.066 9 H -0.307 1.307 10 H -0.238 1.238 11 H -0.324 1.324 12 C 0.158 3.842 13 H 0.077 0.923 14 C -0.151 4.151 15 C 0.110 3.890 16 N -0.709 5.709 17 C 0.510 3.490 18 O -0.579 6.579 19 C -0.147 4.147 20 C 0.192 3.808 21 H 0.124 0.876 22 N -0.707 5.707 23 C 0.546 3.454 24 O -0.583 6.583 25 C -0.189 4.189 26 C -0.063 4.063 27 C -0.122 4.122 28 C -0.077 4.077 29 C -0.097 4.097 30 C -0.080 4.080 31 H 0.054 0.946 32 H 0.030 0.970 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.017 0.983 36 H 0.258 0.742 37 H 0.076 0.924 38 H 0.055 0.945 39 H 0.050 0.950 40 H 0.051 0.949 41 H 0.079 0.921 42 H 0.410 0.590 43 H 0.147 0.853 44 H 0.088 0.912 45 H 0.425 0.575 46 H 0.128 0.872 47 H 0.162 0.838 48 H 0.171 0.829 49 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.488 1.224 -8.556 18.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.005 3.995 3 N -0.326 5.326 4 C -0.368 4.368 5 H 0.073 0.927 6 C -0.208 4.208 7 N -0.593 5.593 8 Si 0.768 3.232 9 H -0.237 1.237 10 H -0.162 1.162 11 H -0.254 1.254 12 C 0.052 3.948 13 H 0.095 0.905 14 C -0.210 4.210 15 C -0.016 4.016 16 N -0.359 5.359 17 C 0.298 3.702 18 O -0.461 6.461 19 C -0.187 4.187 20 C 0.087 3.913 21 H 0.141 0.859 22 N -0.362 5.362 23 C 0.336 3.664 24 O -0.465 6.465 25 C -0.192 4.192 26 C -0.082 4.082 27 C -0.140 4.140 28 C -0.094 4.094 29 C -0.115 4.115 30 C -0.082 4.082 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.035 0.965 36 H 0.067 0.933 37 H 0.095 0.905 38 H 0.074 0.926 39 H 0.069 0.931 40 H 0.069 0.931 41 H 0.097 0.903 42 H 0.246 0.754 43 H 0.165 0.835 44 H 0.107 0.893 45 H 0.267 0.733 46 H 0.146 0.854 47 H 0.179 0.821 48 H 0.189 0.811 49 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 16.506 0.322 -9.177 18.888 hybrid contribution -0.722 -1.264 0.798 1.660 sum 15.784 -0.942 -8.379 17.895 Atomic orbital electron populations 1.22228 0.97553 1.00501 1.01622 1.21078 0.93889 0.86307 0.98179 1.44264 1.74566 1.11221 1.02595 1.18701 1.40690 0.92537 0.84906 0.92689 1.25689 1.00105 1.00088 0.94926 1.69975 1.49715 1.41508 0.98068 0.86115 0.78514 0.81686 0.76893 1.23697 1.16217 1.25445 1.20890 0.92701 0.95926 0.85293 0.90516 1.22141 0.97698 1.01953 0.99202 1.21902 0.86829 1.00485 0.92372 1.46104 1.15531 1.55421 1.18869 1.20759 0.84205 0.77405 0.87880 1.90637 1.82558 1.50018 1.22879 1.22100 0.93332 1.04861 0.98403 1.19859 0.90645 0.82032 0.98788 0.85886 1.46089 1.32752 1.07585 1.49737 1.18920 0.82504 0.86023 0.78987 1.90743 1.75181 1.14720 1.65821 1.20425 0.99555 0.95372 1.03876 1.21083 0.92197 1.01253 0.93644 1.21531 0.99803 0.92844 0.99836 1.21856 0.96038 0.96680 0.94871 1.20795 0.93952 1.00176 0.96593 1.20470 0.96216 0.93868 0.97627 0.92708 0.95086 0.91155 0.91996 0.96497 0.93252 0.90467 0.92607 0.93090 0.93081 0.90300 0.75405 0.83524 0.89338 0.73320 0.85379 0.82052 0.81116 0.81754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.75 10.01 71.98 0.72 -5.03 16 2 C 0.13 5.07 4.64 86.38 0.40 5.47 16 3 N -0.60 -23.80 1.58 -678.05 -1.07 -24.88 16 4 C -0.24 -11.69 9.60 84.03 0.81 -10.88 16 5 H 0.06 2.98 8.06 -2.91 -0.02 2.96 16 6 C -0.01 -0.63 5.34 84.86 0.45 -0.17 16 7 N -0.95 -55.52 13.97 21.65 0.30 -55.22 16 8 Si 0.93 43.69 24.57 68.60 1.69 45.37 16 9 H -0.31 -15.08 6.74 99.48 0.67 -14.41 16 10 H -0.24 -9.87 6.06 99.48 0.60 -9.27 16 11 H -0.32 -15.92 7.11 99.48 0.71 -15.22 16 12 C 0.16 4.91 2.87 44.99 0.13 5.04 16 13 H 0.08 2.43 7.89 -2.38 -0.02 2.41 16 14 C -0.15 -3.93 8.24 71.98 0.59 -3.34 16 15 C 0.11 3.17 4.94 86.38 0.43 3.59 16 16 N -0.71 -21.31 4.77 -463.06 -2.21 -23.51 16 17 C 0.51 14.54 7.71 87.66 0.68 15.21 16 18 O -0.58 -18.72 14.84 -3.04 -0.05 -18.76 16 19 C -0.15 -3.32 5.41 29.85 0.16 -3.16 16 20 C 0.19 4.27 3.07 44.24 0.14 4.41 16 21 H 0.12 2.45 7.98 -2.39 -0.02 2.43 16 22 N -0.71 -20.24 5.70 -449.12 -2.56 -22.80 16 23 C 0.55 17.76 8.34 86.76 0.72 18.49 16 24 O -0.58 -23.41 18.04 -3.88 -0.07 -23.48 16 25 C -0.19 -4.84 6.26 -20.14 -0.13 -4.97 16 26 C -0.06 -1.30 10.10 22.53 0.23 -1.07 16 27 C -0.12 -1.62 10.02 22.23 0.22 -1.40 16 28 C -0.08 -0.81 10.05 22.36 0.22 -0.58 16 29 C -0.10 -1.27 10.03 22.17 0.22 -1.05 16 30 C -0.08 -1.61 5.67 -19.64 -0.11 -1.72 16 31 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.03 1.28 8.14 -2.38 -0.02 1.26 16 33 H 0.07 2.22 6.07 -2.39 -0.01 2.21 16 34 H 0.06 2.17 6.54 -2.39 -0.02 2.16 16 35 H 0.02 0.77 2.23 -2.39 -0.01 0.76 16 36 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 37 H 0.08 1.58 8.14 -2.39 -0.02 1.57 16 38 H 0.05 1.43 6.60 -2.39 -0.02 1.41 16 39 H 0.05 1.44 8.14 -2.39 -0.02 1.43 16 40 H 0.05 1.58 6.86 -2.39 -0.02 1.56 16 41 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.41 13.23 7.29 -92.71 -0.68 12.55 16 43 H 0.15 2.25 8.14 -2.39 -0.02 2.23 16 44 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.42 12.77 8.00 -92.71 -0.74 12.02 16 46 H 0.13 2.59 8.06 -2.91 -0.02 2.57 16 47 H 0.16 1.15 8.06 -2.91 -0.02 1.12 16 48 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 49 H 0.16 1.12 8.06 -2.91 -0.02 1.10 16 Total: -1.00 -72.41 390.74 1.35 -71.06 By element: Atomic # 1 Polarization: 33.94 SS G_CDS: -0.57 Total: 33.37 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: 5.89 Total: 18.85 kcal Atomic # 7 Polarization: -120.87 SS G_CDS: -5.54 Total: -126.41 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: -0.12 Total: -42.25 kcal Atomic # 14 Polarization: 43.69 SS G_CDS: 1.69 Total: 45.37 kcal Total: -72.41 1.35 -71.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001155958443.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.223 kcal (2) G-P(sol) polarization free energy of solvation -72.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.061 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.837 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds