Wall clock time and date at job start Wed Apr 1 2020 05:05:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46978 * 2 1 4 4 C 1.36938 * 119.99954 * 275.91141 * 3 2 1 5 5 H 1.08000 * 119.99579 * 34.07478 * 4 3 2 6 6 C 1.38806 * 120.00074 * 214.08189 * 4 3 2 7 7 N 1.31617 * 120.00382 * 17.04685 * 6 4 3 8 8 Si 1.86807 * 119.99939 * 197.04882 * 6 4 3 9 9 H 1.48506 * 109.46830 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46871 * 119.99634 * 8 6 4 11 11 H 1.48498 * 109.47310 * 239.99690 * 8 6 4 12 12 C 1.46493 * 120.00185 * 95.91589 * 3 2 1 13 13 H 1.09002 * 109.47561 * 177.14259 * 12 3 2 14 14 C 1.53003 * 109.47452 * 57.14390 * 12 3 2 15 15 C 1.53000 * 109.46918 * 297.14496 * 12 3 2 16 16 N 1.46506 * 109.46925 * 304.99655 * 15 12 3 17 17 C 1.34778 * 119.99814 * 180.02562 * 16 15 12 18 18 O 1.21288 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.50693 * 119.99973 * 180.02562 * 17 16 15 20 20 N 1.46503 * 109.47279 * 179.97438 * 19 17 16 21 21 C 1.46728 * 125.62133 * 90.00136 * 20 19 17 22 22 C 1.50828 * 106.25316 * 179.97438 * 21 20 19 23 23 C 1.37579 * 133.24706 * 180.02562 * 22 21 20 24 24 C 1.38472 * 119.95968 * 179.97438 * 23 22 21 25 25 C 1.38389 * 120.18845 * 0.02562 * 24 23 22 26 26 C 1.37938 * 120.31968 * 359.97438 * 25 24 23 27 27 C 1.39630 * 119.82843 * 359.97438 * 26 25 24 28 28 C 1.34418 * 125.62370 * 269.68884 * 20 19 17 29 29 O 1.21548 * 124.85846 * 359.97438 * 28 20 19 30 30 H 1.08995 * 109.47004 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47400 * 300.00126 * 1 2 3 32 32 H 1.08997 * 109.46813 * 60.00126 * 1 2 3 33 33 H 1.09002 * 109.47400 * 239.99874 * 2 1 3 34 34 H 1.09001 * 109.47468 * 119.99628 * 2 1 3 35 35 H 0.97002 * 120.00245 * 180.02562 * 7 6 4 36 36 H 1.09005 * 109.46798 * 299.99955 * 14 12 3 37 37 H 1.08997 * 109.46990 * 59.99794 * 14 12 3 38 38 H 1.08992 * 109.47505 * 180.02562 * 14 12 3 39 39 H 1.08999 * 109.47408 * 65.00292 * 15 12 3 40 40 H 1.09008 * 109.47342 * 185.00395 * 15 12 3 41 41 H 0.96990 * 119.99726 * 0.02562 * 16 15 12 42 42 H 1.08999 * 109.47213 * 300.00238 * 19 17 16 43 43 H 1.09001 * 109.47339 * 59.99650 * 19 17 16 44 44 H 1.09004 * 110.10225 * 299.17469 * 21 20 19 45 45 H 1.09001 * 110.10287 * 60.77991 * 21 20 19 46 46 H 1.07997 * 120.01695 * 0.02562 * 23 22 21 47 47 H 1.07997 * 119.90719 * 179.97438 * 24 23 22 48 48 H 1.07990 * 119.83855 * 179.97438 * 25 24 23 49 49 H 1.07997 * 120.09018 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4232 1.8925 -1.9761 6 6 3.1561 2.9878 -1.3517 7 7 4.1990 2.9694 -0.5490 8 14 3.0551 4.2527 -2.7226 9 1 1.7913 4.0629 -3.4791 10 1 3.0831 5.6181 -2.1394 11 1 4.2106 4.0823 -3.6396 12 6 2.3858 2.0283 1.2619 13 1 2.7713 3.0275 1.0592 14 6 3.4622 1.1995 1.9656 15 6 1.1519 2.1305 2.1608 16 7 0.0791 2.8212 1.4408 17 6 -1.1105 3.0275 2.0400 18 8 -1.2926 2.6416 3.1754 19 6 -2.2142 3.7374 1.2993 20 7 -3.3956 3.8354 2.1601 21 6 -3.6931 4.9383 3.0809 22 6 -5.0052 4.5952 3.7408 23 6 -5.7828 5.2320 4.6801 24 6 -6.9689 4.6553 5.1021 25 6 -7.3749 3.4388 4.5819 26 6 -6.6026 2.7919 3.6397 27 6 -5.4059 3.3676 3.2084 28 6 -4.3888 2.9324 2.2322 29 8 -4.4409 1.9039 1.5865 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.9150 3.6127 -0.6690 36 1 3.0766 0.2003 2.1684 37 1 4.3412 1.1266 1.3252 38 1 3.7352 1.6806 2.9047 39 1 0.8190 1.1297 2.4362 40 1 1.4038 2.6902 3.0616 41 1 0.2249 3.1300 0.5331 42 1 -1.8814 4.7380 1.0232 43 1 -2.4664 3.1772 0.3990 44 1 -2.9070 5.0222 3.8313 45 1 -3.7851 5.8733 2.5282 46 1 -5.4688 6.1816 5.0876 47 1 -7.5785 5.1558 5.8398 48 1 -8.3007 2.9939 4.9153 49 1 -6.9232 1.8429 3.2359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156454937.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:15 Heat of formation + Delta-G solvation = -2.829933 kcal Electronic energy + Delta-G solvation = -30782.970401 eV Core-core repulsion = 26711.312384 eV Total energy + Delta-G solvation = -4071.658017 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.29055 -39.25834 -38.12184 -36.91720 -36.03153 -33.64883 -32.27106 -31.88842 -31.35606 -31.02243 -28.39615 -28.02573 -26.85307 -25.24972 -23.94276 -23.13055 -21.93100 -21.67165 -20.48113 -19.68912 -19.20335 -17.28234 -17.15184 -16.90900 -16.75967 -16.23401 -15.51288 -15.30774 -15.02228 -14.73806 -14.57556 -14.33237 -14.17166 -13.64605 -13.59597 -13.40354 -13.37696 -13.09885 -12.66013 -12.59394 -12.50311 -12.29453 -12.12083 -11.83054 -11.79120 -11.48426 -11.33648 -11.07342 -10.97553 -10.83502 -10.69138 -10.27869 -10.08448 -9.97648 -9.86285 -9.64855 -9.44483 -9.31003 -9.14457 -8.69219 -8.54943 -8.41174 -6.67176 -5.90699 -3.40457 0.56307 1.00393 2.51844 2.73267 2.99270 3.27092 3.37917 3.38369 3.57446 3.84132 3.87853 4.23500 4.39133 4.59057 4.67908 4.97926 4.99850 5.05624 5.13753 5.20508 5.23822 5.26746 5.33239 5.39442 5.45785 5.64197 5.88009 5.91480 5.99202 6.08626 6.09185 6.19356 6.27923 6.36738 6.38932 6.49569 6.52173 6.55640 6.60711 6.69331 6.83805 6.88590 6.94566 7.04554 7.19686 7.45174 7.53754 7.74708 8.03644 8.14821 8.41831 8.69186 9.13810 9.75239 10.33433 11.15422 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.002634 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.490782 B =10625.688779 C =11004.376361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.140 3.860 3 N -0.582 5.582 4 C -0.261 4.261 5 H 0.064 0.936 6 C 0.010 3.990 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.290 1.290 12 C 0.174 3.826 13 H 0.102 0.898 14 C -0.144 4.144 15 C 0.104 3.896 16 N -0.697 5.697 17 C 0.487 3.513 18 O -0.550 6.550 19 C 0.116 3.884 20 N -0.595 5.595 21 C 0.143 3.857 22 C -0.078 4.078 23 C -0.104 4.104 24 C -0.091 4.091 25 C -0.130 4.130 26 C -0.047 4.047 27 C -0.150 4.150 28 C 0.563 3.437 29 O -0.521 6.521 30 H 0.033 0.967 31 H 0.049 0.951 32 H 0.046 0.954 33 H 0.040 0.960 34 H 0.037 0.963 35 H 0.254 0.746 36 H 0.031 0.969 37 H 0.075 0.925 38 H 0.034 0.966 39 H 0.052 0.948 40 H 0.051 0.949 41 H 0.412 0.588 42 H 0.112 0.888 43 H 0.116 0.884 44 H 0.100 0.900 45 H 0.097 0.903 46 H 0.131 0.869 47 H 0.132 0.868 48 H 0.131 0.869 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.660 6.906 9.482 21.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.013 3.987 3 N -0.304 5.304 4 C -0.391 4.391 5 H 0.082 0.918 6 C -0.190 4.190 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.216 1.216 11 H -0.217 1.217 12 C 0.067 3.933 13 H 0.120 0.880 14 C -0.204 4.204 15 C -0.022 4.022 16 N -0.348 5.348 17 C 0.270 3.730 18 O -0.428 6.428 19 C -0.009 4.009 20 N -0.327 5.327 21 C 0.020 3.980 22 C -0.079 4.079 23 C -0.123 4.123 24 C -0.109 4.109 25 C -0.148 4.148 26 C -0.066 4.066 27 C -0.153 4.153 28 C 0.352 3.648 29 O -0.397 6.397 30 H 0.052 0.948 31 H 0.068 0.932 32 H 0.066 0.934 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.064 0.936 36 H 0.050 0.950 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.071 0.929 40 H 0.069 0.931 41 H 0.249 0.751 42 H 0.130 0.870 43 H 0.134 0.866 44 H 0.117 0.883 45 H 0.115 0.885 46 H 0.149 0.851 47 H 0.149 0.851 48 H 0.149 0.851 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.519 6.162 9.834 21.014 hybrid contribution 0.253 0.780 -1.062 1.342 sum -17.266 6.943 8.772 20.573 Atomic orbital electron populations 1.22402 0.99773 0.99106 1.01443 1.20785 0.91727 0.87420 0.98726 1.43885 1.75878 1.08324 1.02274 1.19139 1.07734 1.18554 0.93664 0.91795 1.25186 0.94505 1.01461 0.97817 1.70015 1.07275 1.36281 1.39725 0.86342 0.77699 0.81489 0.81923 1.20128 1.21557 1.21719 1.20525 0.89017 0.99451 0.84334 0.88000 1.22002 1.01066 0.98186 0.99098 1.22181 0.89101 0.95646 0.95271 1.45923 1.12100 1.57805 1.19016 1.20943 0.83923 0.80681 0.87442 1.90670 1.81584 1.51938 1.18647 1.21226 0.83433 1.03120 0.93116 1.47299 1.20777 1.22421 1.42242 1.20492 0.94394 0.90311 0.92821 1.20486 0.95768 0.95318 0.96351 1.20296 0.94496 1.00483 0.96978 1.21307 0.95687 0.95264 0.98674 1.21121 1.00293 0.95787 0.97558 1.20889 0.91695 0.99261 0.94789 1.20426 0.96988 0.97344 1.00553 1.18211 0.81829 0.82862 0.81922 1.90790 1.78058 1.23916 1.46935 0.94827 0.93167 0.93438 0.94116 0.94499 0.93604 0.94985 0.90603 0.94736 0.92924 0.93104 0.75146 0.86959 0.86574 0.88255 0.88526 0.85100 0.85055 0.85061 0.85034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 9.95 37.16 0.37 -2.83 16 2 C 0.14 2.88 5.75 -4.04 -0.02 2.85 16 3 N -0.58 -12.98 1.88 -165.66 -0.31 -13.29 16 4 C -0.26 -6.37 9.07 -15.06 -0.14 -6.50 16 5 H 0.06 1.58 7.89 -52.49 -0.41 1.17 16 6 C 0.01 0.26 4.86 -17.43 -0.08 0.18 16 7 N -0.89 -23.29 10.90 55.49 0.61 -22.68 16 8 Si 0.90 19.80 29.59 -169.99 -5.03 14.77 16 9 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 10 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 12 C 0.17 3.68 1.95 -67.93 -0.13 3.55 16 13 H 0.10 2.43 5.94 -51.93 -0.31 2.12 16 14 C -0.14 -2.92 9.05 37.16 0.34 -2.59 16 15 C 0.10 1.99 4.36 -4.04 -0.02 1.97 16 16 N -0.70 -12.36 4.28 -60.29 -0.26 -12.62 16 17 C 0.49 8.42 7.85 -10.99 -0.09 8.34 16 18 O -0.55 -11.42 16.43 5.55 0.09 -11.33 16 19 C 0.12 1.57 6.54 -5.20 -0.03 1.53 16 20 N -0.60 -8.26 2.45 -177.52 -0.44 -8.69 16 21 C 0.14 1.46 7.38 -5.01 -0.04 1.42 16 22 C -0.08 -0.82 6.38 -104.26 -0.66 -1.48 16 23 C -0.10 -0.82 10.03 -39.74 -0.40 -1.22 16 24 C -0.09 -0.64 10.05 -39.44 -0.40 -1.04 16 25 C -0.13 -1.04 10.02 -39.64 -0.40 -1.43 16 26 C -0.05 -0.51 10.10 -39.17 -0.40 -0.91 16 27 C -0.15 -1.96 6.26 -105.05 -0.66 -2.62 16 28 C 0.56 9.15 7.97 -12.63 -0.10 9.05 16 29 O -0.52 -10.34 17.71 5.32 0.09 -10.24 16 30 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.00 5.32 -51.93 -0.28 0.73 16 32 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 34 H 0.04 0.74 6.29 -51.93 -0.33 0.41 16 35 H 0.25 6.52 8.31 -40.82 -0.34 6.18 16 36 H 0.03 0.61 6.56 -51.93 -0.34 0.27 16 37 H 0.08 1.74 7.69 -51.93 -0.40 1.34 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.05 1.07 6.98 -51.93 -0.36 0.71 16 40 H 0.05 0.96 8.14 -51.92 -0.42 0.54 16 41 H 0.41 7.32 7.73 -40.82 -0.32 7.00 16 42 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 43 H 0.12 1.58 8.00 -51.93 -0.42 1.17 16 44 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 47 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 48 H 0.13 0.70 8.06 -52.49 -0.42 0.28 16 49 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 LS Contribution 400.16 15.07 6.03 6.03 Total: -1.00 -32.16 400.16 -9.44 -41.60 By element: Atomic # 1 Polarization: 15.56 SS G_CDS: -7.36 Total: 8.20 kcal Atomic # 6 Polarization: 11.12 SS G_CDS: -2.86 Total: 8.26 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -0.40 Total: -57.28 kcal Atomic # 8 Polarization: -21.75 SS G_CDS: 0.19 Total: -21.57 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.03 Total: 14.77 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.16 -9.44 -41.60 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156454937.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.770 kcal (2) G-P(sol) polarization free energy of solvation -32.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds