Wall clock time and date at job start Wed Apr 1 2020 05:05:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46978 * 2 1 4 4 C 1.36938 * 119.99954 * 275.91141 * 3 2 1 5 5 H 1.08000 * 119.99579 * 34.07478 * 4 3 2 6 6 C 1.38806 * 120.00074 * 214.08189 * 4 3 2 7 7 N 1.31617 * 120.00382 * 17.04685 * 6 4 3 8 8 Si 1.86807 * 119.99939 * 197.04882 * 6 4 3 9 9 H 1.48506 * 109.46830 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46871 * 119.99634 * 8 6 4 11 11 H 1.48498 * 109.47310 * 239.99690 * 8 6 4 12 12 C 1.46493 * 120.00185 * 95.91589 * 3 2 1 13 13 H 1.09002 * 109.47561 * 177.14259 * 12 3 2 14 14 C 1.53003 * 109.47452 * 57.14390 * 12 3 2 15 15 C 1.53000 * 109.46918 * 297.14496 * 12 3 2 16 16 N 1.46506 * 109.46925 * 304.99655 * 15 12 3 17 17 C 1.34778 * 119.99814 * 180.02562 * 16 15 12 18 18 O 1.21288 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.50693 * 119.99973 * 180.02562 * 17 16 15 20 20 N 1.46503 * 109.47279 * 179.97438 * 19 17 16 21 21 C 1.46728 * 125.62133 * 90.00136 * 20 19 17 22 22 C 1.50828 * 106.25316 * 179.97438 * 21 20 19 23 23 C 1.37579 * 133.24706 * 180.02562 * 22 21 20 24 24 C 1.38472 * 119.95968 * 179.97438 * 23 22 21 25 25 C 1.38389 * 120.18845 * 0.02562 * 24 23 22 26 26 C 1.37938 * 120.31968 * 359.97438 * 25 24 23 27 27 C 1.39630 * 119.82843 * 359.97438 * 26 25 24 28 28 C 1.34418 * 125.62370 * 269.68884 * 20 19 17 29 29 O 1.21548 * 124.85846 * 359.97438 * 28 20 19 30 30 H 1.08995 * 109.47004 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47400 * 300.00126 * 1 2 3 32 32 H 1.08997 * 109.46813 * 60.00126 * 1 2 3 33 33 H 1.09002 * 109.47400 * 239.99874 * 2 1 3 34 34 H 1.09001 * 109.47468 * 119.99628 * 2 1 3 35 35 H 0.97002 * 120.00245 * 180.02562 * 7 6 4 36 36 H 1.09005 * 109.46798 * 299.99955 * 14 12 3 37 37 H 1.08997 * 109.46990 * 59.99794 * 14 12 3 38 38 H 1.08992 * 109.47505 * 180.02562 * 14 12 3 39 39 H 1.08999 * 109.47408 * 65.00292 * 15 12 3 40 40 H 1.09008 * 109.47342 * 185.00395 * 15 12 3 41 41 H 0.96990 * 119.99726 * 0.02562 * 16 15 12 42 42 H 1.08999 * 109.47213 * 300.00238 * 19 17 16 43 43 H 1.09001 * 109.47339 * 59.99650 * 19 17 16 44 44 H 1.09004 * 110.10225 * 299.17469 * 21 20 19 45 45 H 1.09001 * 110.10287 * 60.77991 * 21 20 19 46 46 H 1.07997 * 120.01695 * 0.02562 * 23 22 21 47 47 H 1.07997 * 119.90719 * 179.97438 * 24 23 22 48 48 H 1.07990 * 119.83855 * 179.97438 * 25 24 23 49 49 H 1.07997 * 120.09018 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4232 1.8925 -1.9761 6 6 3.1561 2.9878 -1.3517 7 7 4.1990 2.9694 -0.5490 8 14 3.0551 4.2527 -2.7226 9 1 1.7913 4.0629 -3.4791 10 1 3.0831 5.6181 -2.1394 11 1 4.2106 4.0823 -3.6396 12 6 2.3858 2.0283 1.2619 13 1 2.7713 3.0275 1.0592 14 6 3.4622 1.1995 1.9656 15 6 1.1519 2.1305 2.1608 16 7 0.0791 2.8212 1.4408 17 6 -1.1105 3.0275 2.0400 18 8 -1.2926 2.6416 3.1754 19 6 -2.2142 3.7374 1.2993 20 7 -3.3956 3.8354 2.1601 21 6 -3.6931 4.9383 3.0809 22 6 -5.0052 4.5952 3.7408 23 6 -5.7828 5.2320 4.6801 24 6 -6.9689 4.6553 5.1021 25 6 -7.3749 3.4388 4.5819 26 6 -6.6026 2.7919 3.6397 27 6 -5.4059 3.3676 3.2084 28 6 -4.3888 2.9324 2.2322 29 8 -4.4409 1.9039 1.5865 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8934 -0.5139 -0.8900 34 1 1.8934 -0.5138 0.8900 35 1 4.9150 3.6127 -0.6690 36 1 3.0766 0.2003 2.1684 37 1 4.3412 1.1266 1.3252 38 1 3.7352 1.6806 2.9047 39 1 0.8190 1.1297 2.4362 40 1 1.4038 2.6902 3.0616 41 1 0.2249 3.1300 0.5331 42 1 -1.8814 4.7380 1.0232 43 1 -2.4664 3.1772 0.3990 44 1 -2.9070 5.0222 3.8313 45 1 -3.7851 5.8733 2.5282 46 1 -5.4688 6.1816 5.0876 47 1 -7.5785 5.1558 5.8398 48 1 -8.3007 2.9939 4.9153 49 1 -6.9232 1.8429 3.2359 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001156454937.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:13 Heat of formation + Delta-G solvation = -21.577288 kcal Electronic energy + Delta-G solvation = -30783.783347 eV Core-core repulsion = 26711.312384 eV Total energy + Delta-G solvation = -4072.470963 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.24519 -40.62624 -39.12548 -38.57136 -37.12064 -35.24286 -33.76327 -33.26538 -32.55381 -32.05990 -30.00481 -29.26708 -27.72715 -26.68114 -25.78987 -24.05274 -23.31885 -22.65634 -21.65311 -21.08140 -20.74594 -18.86232 -18.26129 -18.05149 -17.98985 -17.16917 -16.82179 -16.61096 -16.45689 -16.16656 -15.86592 -15.50602 -15.28868 -15.08502 -14.64278 -14.58351 -14.43326 -14.32322 -14.05251 -14.01735 -13.92581 -13.53086 -13.32631 -13.31159 -12.97725 -12.82152 -12.76043 -12.72502 -12.57510 -12.40816 -12.03329 -12.00476 -11.86073 -11.39165 -11.26394 -11.18556 -11.07810 -10.44063 -10.17881 -9.94214 -9.91129 -9.66292 -8.51984 -7.80987 -5.33007 -0.23063 0.34133 1.48193 1.50460 1.56769 1.61611 1.64120 1.77583 2.45541 2.56484 2.82973 3.08957 3.33000 3.38758 3.63317 3.83697 3.91655 4.05426 4.17811 4.24437 4.24532 4.33431 4.41971 4.43892 4.49692 4.52168 4.56195 4.64863 4.76984 4.77886 4.85539 4.90456 4.94610 4.98663 5.03247 5.08861 5.19438 5.28472 5.37378 5.43920 5.48339 5.50135 5.55208 5.70580 5.76570 5.82639 5.84003 5.92257 6.51304 6.65899 6.94961 7.23675 7.28368 7.91856 8.46196 9.22872 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016838 B = 0.002634 C = 0.002544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.490782 B =10625.688779 C =11004.376361 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.140 3.860 3 N -0.590 5.590 4 C -0.261 4.261 5 H 0.060 0.940 6 C -0.031 4.031 7 N -0.915 5.915 8 Si 0.955 3.045 9 H -0.268 1.268 10 H -0.287 1.287 11 H -0.303 1.303 12 C 0.181 3.819 13 H 0.078 0.922 14 C -0.136 4.136 15 C 0.118 3.882 16 N -0.695 5.695 17 C 0.487 3.513 18 O -0.586 6.586 19 C 0.118 3.882 20 N -0.596 5.596 21 C 0.138 3.862 22 C -0.081 4.081 23 C -0.101 4.101 24 C -0.078 4.078 25 C -0.127 4.127 26 C -0.067 4.067 27 C -0.192 4.192 28 C 0.545 3.455 29 O -0.579 6.579 30 H 0.049 0.951 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.032 0.968 34 H 0.043 0.957 35 H 0.249 0.751 36 H 0.040 0.960 37 H 0.047 0.953 38 H 0.052 0.948 39 H 0.041 0.959 40 H 0.055 0.945 41 H 0.413 0.587 42 H 0.157 0.843 43 H 0.113 0.887 44 H 0.101 0.899 45 H 0.135 0.865 46 H 0.165 0.835 47 H 0.171 0.829 48 H 0.160 0.840 49 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.632 9.268 10.773 24.236 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.014 3.986 3 N -0.312 5.312 4 C -0.391 4.391 5 H 0.078 0.922 6 C -0.228 4.228 7 N -0.559 5.559 8 Si 0.784 3.216 9 H -0.192 1.192 10 H -0.214 1.214 11 H -0.231 1.231 12 C 0.074 3.926 13 H 0.096 0.904 14 C -0.195 4.195 15 C -0.009 4.009 16 N -0.345 5.345 17 C 0.273 3.727 18 O -0.467 6.467 19 C -0.007 4.007 20 N -0.327 5.327 21 C 0.017 3.983 22 C -0.082 4.082 23 C -0.119 4.119 24 C -0.096 4.096 25 C -0.145 4.145 26 C -0.086 4.086 27 C -0.195 4.195 28 C 0.336 3.664 29 O -0.460 6.460 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.059 0.941 40 H 0.073 0.927 41 H 0.250 0.750 42 H 0.175 0.825 43 H 0.130 0.870 44 H 0.119 0.881 45 H 0.152 0.848 46 H 0.183 0.817 47 H 0.189 0.811 48 H 0.177 0.823 49 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -19.503 8.558 11.135 24.033 hybrid contribution 0.820 0.027 -1.384 1.609 sum -18.683 8.584 9.751 22.756 Atomic orbital electron populations 1.22219 0.98449 0.99941 1.00566 1.20817 0.92560 0.86619 0.98579 1.44000 1.75996 1.08952 1.02229 1.19262 1.07244 1.18491 0.94130 0.92227 1.25751 0.94317 1.03025 0.99742 1.70145 1.07779 1.36804 1.41193 0.85419 0.77249 0.79461 0.79458 1.19213 1.21388 1.23057 1.20389 0.89832 0.98142 0.84264 0.90429 1.21878 0.99622 0.98822 0.99193 1.21880 0.88680 0.95320 0.94976 1.45876 1.12149 1.57628 1.18888 1.21576 0.84163 0.79928 0.87036 1.90649 1.82168 1.53474 1.20449 1.21325 0.82156 1.04928 0.92262 1.47506 1.19949 1.22882 1.42325 1.20784 0.94404 0.90362 0.92740 1.20685 0.96022 0.94494 0.96977 1.20750 0.94111 1.01440 0.95596 1.21839 0.95328 0.94377 0.98038 1.21477 1.00687 0.96103 0.96220 1.21063 0.91865 0.99552 0.96087 1.20404 0.97877 0.99406 1.01833 1.18945 0.83063 0.82407 0.81945 1.90725 1.79622 1.26300 1.49402 0.93165 0.94239 0.93959 0.94947 0.93904 0.94148 0.94083 0.93422 0.92925 0.94058 0.92710 0.75025 0.82505 0.86951 0.88121 0.84760 0.81712 0.81142 0.82282 0.85985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.79 9.95 71.98 0.72 -5.07 16 2 C 0.14 5.76 5.75 86.38 0.50 6.26 16 3 N -0.59 -26.44 1.88 -678.03 -1.28 -27.71 16 4 C -0.26 -12.74 9.07 84.03 0.76 -11.98 16 5 H 0.06 2.94 7.89 -2.91 -0.02 2.91 16 6 C -0.03 -1.54 4.86 84.86 0.41 -1.12 16 7 N -0.92 -48.42 10.90 21.65 0.24 -48.19 16 8 Si 0.95 40.73 29.59 68.60 2.03 42.76 16 9 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 10 H -0.29 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.30 -13.50 7.11 99.48 0.71 -12.79 16 12 C 0.18 7.69 1.95 44.99 0.09 7.78 16 13 H 0.08 3.74 5.94 -2.39 -0.01 3.73 16 14 C -0.14 -5.52 9.05 71.98 0.65 -4.87 16 15 C 0.12 4.52 4.36 86.38 0.38 4.90 16 16 N -0.69 -24.55 4.28 -463.04 -1.98 -26.53 16 17 C 0.49 16.83 7.85 87.65 0.69 17.52 16 18 O -0.59 -24.61 16.43 -3.05 -0.05 -24.66 16 19 C 0.12 3.11 6.54 85.63 0.56 3.67 16 20 N -0.60 -16.36 2.45 -834.03 -2.05 -18.41 16 21 C 0.14 2.57 7.38 85.63 0.63 3.20 16 22 C -0.08 -1.54 6.38 -19.63 -0.13 -1.67 16 23 C -0.10 -1.21 10.03 22.17 0.22 -0.98 16 24 C -0.08 -0.77 10.05 22.36 0.22 -0.55 16 25 C -0.13 -1.72 10.02 22.23 0.22 -1.50 16 26 C -0.07 -1.45 10.10 22.53 0.23 -1.23 16 27 C -0.19 -5.08 6.26 -20.14 -0.13 -5.21 16 28 C 0.55 18.47 7.97 86.75 0.69 19.16 16 29 O -0.58 -24.62 17.71 -3.87 -0.07 -24.69 16 30 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 31 H 0.04 1.57 5.32 -2.39 -0.01 1.56 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.03 1.38 8.09 -2.39 -0.02 1.36 16 34 H 0.04 1.70 6.29 -2.39 -0.02 1.69 16 35 H 0.25 12.96 8.31 -92.71 -0.77 12.19 16 36 H 0.04 1.55 6.56 -2.38 -0.02 1.54 16 37 H 0.05 2.20 7.69 -2.39 -0.02 2.18 16 38 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.04 1.69 6.98 -2.39 -0.02 1.67 16 40 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 41 H 0.41 14.55 7.73 -92.72 -0.72 13.84 16 42 H 0.16 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.11 3.09 8.00 -2.39 -0.02 3.07 16 44 H 0.10 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.13 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.17 0.84 8.06 -2.91 -0.02 0.82 16 47 H 0.17 0.40 8.06 -2.91 -0.02 0.38 16 48 H 0.16 1.18 8.06 -2.92 -0.02 1.16 16 49 H 0.12 2.72 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -73.40 400.16 3.81 -69.59 By element: Atomic # 1 Polarization: 29.28 SS G_CDS: 0.25 Total: 29.53 kcal Atomic # 6 Polarization: 21.59 SS G_CDS: 6.72 Total: 28.31 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -5.07 Total: -120.84 kcal Atomic # 8 Polarization: -49.23 SS G_CDS: -0.12 Total: -49.35 kcal Atomic # 14 Polarization: 40.73 SS G_CDS: 2.03 Total: 42.76 kcal Total: -73.40 3.81 -69.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156454937.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.012 kcal (2) G-P(sol) polarization free energy of solvation -73.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds