Wall clock time and date at job start Wed Apr 1 2020 05:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46506 * 109.47015 * 2 1 4 4 C 1.36931 * 120.00102 * 274.04065 * 3 2 1 5 5 H 1.07995 * 120.00381 * 174.71402 * 4 3 2 6 6 C 1.38818 * 120.00151 * 354.70815 * 4 3 2 7 7 N 1.31617 * 119.99734 * 31.38534 * 6 4 3 8 8 Si 1.86800 * 120.00310 * 211.38556 * 6 4 3 9 9 H 1.48498 * 109.47046 * 84.99363 * 8 6 4 10 10 H 1.48496 * 109.47073 * 204.99349 * 8 6 4 11 11 H 1.48505 * 109.46876 * 324.99788 * 8 6 4 12 12 C 1.46500 * 120.00004 * 94.04322 * 3 2 1 13 13 H 1.09000 * 109.47282 * 179.97438 * 12 3 2 14 14 C 1.53000 * 109.47100 * 59.99345 * 12 3 2 15 15 C 1.53006 * 109.46948 * 299.99717 * 12 3 2 16 16 N 1.46497 * 109.47202 * 305.00242 * 15 12 3 17 17 C 1.34777 * 119.99930 * 179.97438 * 16 15 12 18 18 O 1.21658 * 119.99908 * 0.02562 * 17 16 15 19 19 C 1.46916 * 119.99741 * 179.97438 * 17 16 15 20 20 C 1.35938 * 125.45278 * 180.02562 * 19 17 16 21 21 C 1.41425 * 107.75010 * 179.77746 * 20 19 17 22 22 C 1.40842 * 107.03887 * 0.39198 * 21 20 19 23 23 C 1.39160 * 119.56499 * 179.81587 * 22 21 20 24 24 C 1.37768 * 120.08153 * 359.73040 * 23 22 21 25 25 C 1.38746 * 120.71864 * 0.02562 * 24 23 22 26 26 C 1.38071 * 120.40604 * 0.02562 * 25 24 23 27 27 O 1.35778 * 120.20447 * 179.97438 * 26 25 24 28 28 C 1.42898 * 116.99664 * 0.02562 * 27 26 25 29 29 N 1.37532 * 107.37299 * 359.61131 * 22 21 20 30 30 H 0.97001 * 125.63176 * 180.23179 * 29 22 21 31 31 H 1.09000 * 109.46826 * 59.99497 * 1 2 3 32 32 H 1.08994 * 109.47404 * 180.02562 * 1 2 3 33 33 H 1.09008 * 109.46976 * 299.99976 * 1 2 3 34 34 H 1.08996 * 109.46911 * 240.00353 * 2 1 3 35 35 H 1.09001 * 109.47276 * 119.99875 * 2 1 3 36 36 H 0.97000 * 120.00213 * 180.02562 * 7 6 4 37 37 H 1.08997 * 109.47917 * 300.00270 * 14 12 3 38 38 H 1.09007 * 109.47077 * 60.00474 * 14 12 3 39 39 H 1.08999 * 109.46823 * 179.97438 * 14 12 3 40 40 H 1.09002 * 109.46835 * 184.99716 * 15 12 3 41 41 H 1.09001 * 109.47015 * 65.00150 * 15 12 3 42 42 H 0.97005 * 119.99913 * 359.97438 * 16 15 12 43 43 H 1.07998 * 126.12667 * 0.02562 * 20 19 17 44 44 H 1.08005 * 119.96178 * 179.70866 * 23 22 21 45 45 H 1.07996 * 119.63892 * 180.02562 * 24 23 22 46 46 H 1.08008 * 119.79779 * 180.02562 * 25 24 23 47 47 H 1.09001 * 109.47336 * 299.99315 * 28 27 26 48 48 H 1.09004 * 109.46654 * 180.02562 * 28 27 26 49 49 H 1.08993 * 109.47288 * 59.99871 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1678 2.0547 -1.1829 5 1 2.4454 3.0983 -1.1789 6 6 1.9625 1.3958 -2.3874 7 7 1.0859 0.4167 -2.4608 8 14 2.9303 1.8987 -3.9039 9 1 4.2409 1.2006 -3.9088 10 1 2.1677 1.5283 -5.1231 11 1 3.1516 3.3670 -3.8854 12 6 2.3468 2.0421 1.2656 13 1 2.6912 3.0570 1.0669 14 6 3.4517 1.2593 1.9779 15 6 1.1020 2.0901 2.1539 16 7 0.0067 2.7349 1.4253 17 6 -1.1959 2.8882 2.0141 18 8 -1.3718 2.4917 3.1507 19 6 -2.2942 3.5353 1.2836 20 6 -3.5465 3.7469 1.7681 21 6 -4.2947 4.3976 0.7596 22 6 -3.4411 4.5575 -0.3492 23 6 -3.9207 5.1724 -1.5018 24 6 -5.2239 5.6157 -1.5568 25 6 -6.0728 5.4575 -0.4708 26 6 -5.6228 4.8520 0.6855 27 8 -6.4568 4.6997 1.7460 28 6 -7.7910 5.1896 1.5976 29 7 -2.2196 4.0261 -0.0072 30 1 -1.4352 3.9996 -0.5773 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3633 0.5139 0.8901 34 1 1.8933 -0.5138 -0.8900 35 1 1.8934 -0.5138 0.8900 36 1 0.9427 -0.0439 -3.3024 37 1 3.1078 0.2443 2.1766 38 1 4.3386 1.2251 1.3450 39 1 3.6964 1.7512 2.9192 40 1 1.3221 2.6591 3.0573 41 1 0.8101 1.0757 2.4256 42 1 0.1471 3.0514 0.5192 43 1 -3.9047 3.4715 2.7490 44 1 -3.2703 5.3025 -2.3542 45 1 -5.5887 6.0915 -2.4551 46 1 -7.0919 5.8103 -0.5303 47 1 -7.7646 6.2607 1.3972 48 1 -8.3497 5.0058 2.5153 49 1 -8.2762 4.6765 0.7673 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001156922547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:45 Heat of formation + Delta-G solvation = 18.499330 kcal Electronic energy + Delta-G solvation = -30940.037879 eV Core-core repulsion = 26869.304768 eV Total energy + Delta-G solvation = -4070.733110 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -41.53913 -39.52372 -38.73987 -37.05140 -35.95769 -34.02411 -32.31393 -31.69367 -30.26990 -29.58325 -28.70686 -28.48879 -27.42876 -25.97964 -23.87593 -23.17822 -21.95719 -21.81816 -21.14326 -19.76505 -19.23784 -18.59780 -17.51298 -17.02327 -16.26996 -15.89577 -15.85417 -15.49609 -15.34359 -15.29210 -14.89777 -14.30302 -14.09930 -13.74115 -13.55836 -13.34957 -12.99097 -12.86311 -12.70378 -12.53853 -12.49531 -12.25380 -11.99020 -11.91247 -11.55859 -11.53060 -11.20172 -11.11493 -10.92927 -10.85231 -10.78539 -10.67584 -10.37135 -9.91391 -9.79771 -9.69305 -9.45144 -9.35167 -8.63817 -8.32633 -8.25325 -7.41400 -7.10838 -5.94761 -3.15702 0.90296 1.56685 2.25839 2.95211 3.24177 3.30875 3.40263 3.43241 3.54238 3.66769 3.84750 4.37846 4.72813 4.82544 4.97122 4.98275 5.02374 5.11812 5.16485 5.28636 5.31695 5.32347 5.41133 5.48664 5.60024 5.75939 5.84796 6.00993 6.05847 6.07351 6.21146 6.24933 6.27186 6.43400 6.53929 6.57978 6.64890 6.65604 6.77729 6.85086 6.93672 6.95655 7.08828 7.16770 7.36099 7.47919 7.57165 7.75152 7.95858 8.04814 8.21228 8.52723 9.11114 9.75271 10.21061 11.08153 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012199 B = 0.003259 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2294.719954 B = 8588.758188 C =10168.340477 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.165 3.835 3 N -0.594 5.594 4 C -0.268 4.268 5 H 0.075 0.925 6 C 0.012 3.988 7 N -0.877 5.877 8 Si 0.879 3.121 9 H -0.289 1.289 10 H -0.295 1.295 11 H -0.283 1.283 12 C 0.161 3.839 13 H 0.068 0.932 14 C -0.158 4.158 15 C 0.105 3.895 16 N -0.697 5.697 17 C 0.578 3.422 18 O -0.540 6.540 19 C 0.020 3.980 20 C -0.097 4.097 21 C -0.142 4.142 22 C 0.150 3.850 23 C -0.167 4.167 24 C -0.053 4.053 25 C -0.253 4.253 26 C 0.184 3.816 27 O -0.311 6.311 28 C 0.028 3.972 29 N -0.568 5.568 30 H 0.426 0.574 31 H 0.085 0.915 32 H 0.015 0.985 33 H 0.020 0.980 34 H 0.084 0.916 35 H 0.007 0.993 36 H 0.253 0.747 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.407 0.593 43 H 0.155 0.845 44 H 0.125 0.875 45 H 0.127 0.873 46 H 0.127 0.873 47 H 0.055 0.945 48 H 0.098 0.902 49 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.551 9.315 4.579 15.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.040 3.960 3 N -0.317 5.317 4 C -0.396 4.396 5 H 0.093 0.907 6 C -0.187 4.187 7 N -0.521 5.521 8 Si 0.709 3.291 9 H -0.216 1.216 10 H -0.222 1.222 11 H -0.208 1.208 12 C 0.052 3.948 13 H 0.086 0.914 14 C -0.217 4.217 15 C -0.021 4.021 16 N -0.347 5.347 17 C 0.364 3.636 18 O -0.418 6.418 19 C -0.090 4.090 20 C -0.124 4.124 21 C -0.147 4.147 22 C 0.037 3.963 23 C -0.188 4.188 24 C -0.073 4.073 25 C -0.273 4.273 26 C 0.138 3.862 27 O -0.223 6.223 28 C -0.068 4.068 29 N -0.172 5.172 30 H 0.266 0.734 31 H 0.104 0.896 32 H 0.034 0.966 33 H 0.039 0.961 34 H 0.102 0.898 35 H 0.026 0.974 36 H 0.064 0.936 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.083 0.917 42 H 0.243 0.757 43 H 0.172 0.828 44 H 0.143 0.857 45 H 0.145 0.855 46 H 0.144 0.856 47 H 0.074 0.926 48 H 0.117 0.883 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -11.473 8.778 5.402 15.423 hybrid contribution 0.682 0.356 -1.893 2.043 sum -10.791 9.134 3.509 14.567 Atomic orbital electron populations 1.22409 0.99112 0.98179 1.01211 1.20892 0.92469 0.84461 0.98141 1.44237 1.75734 1.11273 1.00431 1.19181 1.42218 0.94859 0.83329 0.90719 1.24704 0.98590 0.98209 0.97209 1.70280 1.30111 1.26440 1.25270 0.86659 0.81366 0.77954 0.83139 1.21632 1.22166 1.20847 1.20561 0.91159 0.96480 0.86613 0.91386 1.22180 0.99625 1.00649 0.99295 1.22084 0.87877 0.97452 0.94686 1.45787 1.10605 1.59446 1.18835 1.17119 0.81600 0.79188 0.85729 1.90799 1.82406 1.50990 1.17647 1.20276 0.96884 1.06166 0.85642 1.20716 0.90864 1.01117 0.99679 1.17332 0.91992 1.09235 0.96116 1.18006 0.85083 0.98136 0.95052 1.19977 0.96910 1.05537 0.96379 1.20517 0.92096 0.97164 0.97518 1.20812 1.01365 1.10663 0.94461 1.18443 0.88006 0.93402 0.86370 1.86055 1.22453 1.76939 1.36873 1.23062 0.81195 0.99057 1.03436 1.42109 1.11655 1.50228 1.13222 0.73412 0.89589 0.96637 0.96137 0.89823 0.97434 0.93634 0.92889 0.92227 0.93564 0.92439 0.91657 0.75659 0.82780 0.85714 0.85488 0.85564 0.92618 0.88342 0.92568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 9.27 37.16 0.34 -3.01 16 2 C 0.16 3.70 5.01 -4.04 -0.02 3.68 16 3 N -0.59 -12.72 1.92 -165.66 -0.32 -13.04 16 4 C -0.27 -6.32 9.38 -15.06 -0.14 -6.46 16 5 H 0.07 1.72 7.83 -52.49 -0.41 1.31 16 6 C 0.01 0.29 4.97 -17.43 -0.09 0.20 16 7 N -0.88 -22.48 8.40 55.49 0.47 -22.01 16 8 Si 0.88 19.91 29.65 -169.99 -5.04 14.87 16 9 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 12 C 0.16 2.87 2.87 -67.93 -0.19 2.68 16 13 H 0.07 1.19 7.78 -51.93 -0.40 0.79 16 14 C -0.16 -2.51 9.18 37.16 0.34 -2.17 16 15 C 0.10 1.82 4.32 -4.04 -0.02 1.81 16 16 N -0.70 -12.25 3.99 -61.54 -0.25 -12.49 16 17 C 0.58 10.63 7.54 -12.75 -0.10 10.54 16 18 O -0.54 -11.27 16.84 5.23 0.09 -11.19 16 19 C 0.02 0.33 6.97 -82.26 -0.57 -0.24 16 20 C -0.10 -1.60 10.52 -39.19 -0.41 -2.01 16 21 C -0.14 -2.19 6.11 -106.82 -0.65 -2.84 16 22 C 0.15 2.21 7.25 -83.98 -0.61 1.60 16 23 C -0.17 -2.09 10.06 -39.41 -0.40 -2.49 16 24 C -0.05 -0.58 10.01 -39.57 -0.40 -0.98 16 25 C -0.25 -2.84 9.03 -39.46 -0.36 -3.19 16 26 C 0.18 2.49 6.73 -38.77 -0.26 2.23 16 27 O -0.31 -3.88 10.50 -19.04 -0.20 -4.08 16 28 C 0.03 0.21 9.81 101.05 0.99 1.20 16 29 N -0.57 -8.54 6.08 -7.35 -0.04 -8.58 16 30 H 0.43 5.96 8.12 -40.82 -0.33 5.62 16 31 H 0.09 2.14 6.30 -51.93 -0.33 1.81 16 32 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.02 0.43 4.84 -51.92 -0.25 0.18 16 34 H 0.08 2.13 5.84 -51.93 -0.30 1.82 16 35 H 0.01 0.16 6.43 -51.93 -0.33 -0.18 16 36 H 0.25 6.49 8.31 -40.82 -0.34 6.15 16 37 H 0.05 0.86 6.66 -51.93 -0.35 0.52 16 38 H 0.06 0.98 8.14 -51.92 -0.42 0.56 16 39 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.07 1.24 6.92 -51.93 -0.36 0.88 16 42 H 0.41 7.21 6.95 -40.82 -0.28 6.92 16 43 H 0.15 2.45 8.06 -52.49 -0.42 2.02 16 44 H 0.12 1.36 8.06 -52.48 -0.42 0.93 16 45 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 46 H 0.13 1.07 6.28 -52.48 -0.33 0.74 16 47 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 48 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 49 H 0.06 0.37 7.66 -51.93 -0.40 -0.03 16 LS Contribution 390.18 15.07 5.88 5.88 Total: -1.00 -28.56 390.18 -8.94 -37.50 By element: Atomic # 1 Polarization: 19.60 SS G_CDS: -6.99 Total: 12.60 kcal Atomic # 6 Polarization: 3.08 SS G_CDS: -2.54 Total: 0.54 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.14 Total: -56.13 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: -0.11 Total: -15.27 kcal Atomic # 14 Polarization: 19.91 SS G_CDS: -5.04 Total: 14.87 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -28.56 -8.94 -37.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001156922547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.999 kcal (2) G-P(sol) polarization free energy of solvation -28.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.500 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds