Wall clock time and date at job start Wed Apr 1 2020 05:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47537 * 2 1 4 4 C 1.36941 * 119.99475 * 275.73421 * 3 2 1 5 5 H 1.07998 * 120.00359 * 33.26935 * 4 3 2 6 6 C 1.38813 * 119.99840 * 213.26447 * 4 3 2 7 7 N 1.31625 * 119.99717 * 17.26953 * 6 4 3 8 8 Si 1.86800 * 120.00314 * 197.26823 * 6 4 3 9 9 H 1.48494 * 109.46940 * 89.99976 * 8 6 4 10 10 H 1.48502 * 109.46926 * 210.00220 * 8 6 4 11 11 H 1.48504 * 109.46771 * 329.99962 * 8 6 4 12 12 C 1.46496 * 120.00403 * 95.72632 * 3 2 1 13 13 H 1.08994 * 109.47383 * 180.08707 * 12 3 2 14 14 C 1.53002 * 109.46606 * 60.08595 * 12 3 2 15 15 C 1.53001 * 109.47235 * 300.08992 * 12 3 2 16 16 N 1.46495 * 109.47059 * 304.99506 * 15 12 3 17 17 C 1.34781 * 119.99744 * 179.97438 * 16 15 12 18 18 O 1.21745 * 119.99981 * 0.02562 * 17 16 15 19 19 C 1.46306 * 119.99624 * 180.27765 * 17 16 15 20 20 N 1.38753 * 125.41892 * 359.74678 * 19 17 16 21 21 H 0.96989 * 125.11409 * 359.94946 * 20 19 17 22 22 C 1.37504 * 109.76822 * 179.97438 * 20 19 17 23 23 C 1.39292 * 132.99672 * 180.02562 * 22 20 19 24 24 C 1.37670 * 119.82377 * 179.97438 * 23 22 20 25 25 C 1.38910 * 120.69334 * 0.08301 * 24 23 22 26 26 C 1.36527 * 120.53660 * 359.93814 * 25 24 23 27 27 C 1.39854 * 119.79538 * 0.02562 * 26 25 24 28 28 C 1.36690 * 125.41485 * 179.44587 * 19 17 16 29 29 O 1.35644 * 126.59561 * 0.03144 * 28 19 17 30 30 C 1.42899 * 116.99631 * 90.02949 * 29 28 19 31 31 H 1.09001 * 109.47496 * 300.00504 * 1 2 3 32 32 H 1.09002 * 109.47143 * 60.00309 * 1 2 3 33 33 H 1.08998 * 109.47569 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46762 * 239.99379 * 2 1 3 35 35 H 1.09000 * 109.46922 * 120.00186 * 2 1 3 36 36 H 0.96999 * 119.99578 * 179.97438 * 7 6 4 37 37 H 1.08994 * 109.47342 * 300.00137 * 14 12 3 38 38 H 1.09003 * 109.47173 * 60.00608 * 14 12 3 39 39 H 1.09001 * 109.46718 * 179.97438 * 14 12 3 40 40 H 1.09002 * 109.47162 * 184.99426 * 15 12 3 41 41 H 1.09004 * 109.47063 * 64.99733 * 15 12 3 42 42 H 0.96993 * 120.00344 * 0.02562 * 16 15 12 43 43 H 1.07997 * 120.08728 * 359.96268 * 23 22 20 44 44 H 1.08004 * 119.65487 * 180.02562 * 24 23 22 45 45 H 1.08000 * 119.72957 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.10444 * 180.02562 * 26 25 24 47 47 H 1.09007 * 109.46916 * 299.99750 * 30 29 28 48 48 H 1.08998 * 109.47523 * 60.00104 * 30 29 28 49 49 H 1.09002 * 109.46842 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0661 -1.1801 5 1 1.4370 1.8809 -1.9832 6 6 3.1501 2.9985 -1.3440 7 7 4.1871 2.9916 -0.5334 8 14 3.0446 4.2629 -2.7150 9 1 2.3489 5.4765 -2.2166 10 1 4.4141 4.6252 -3.1606 11 1 2.2870 3.6921 -3.8575 12 6 2.3820 2.0296 1.2623 13 1 2.7190 3.0470 1.0643 14 6 3.5076 1.2412 1.9348 15 6 1.1629 2.0669 2.1862 16 7 0.0467 2.7175 1.4957 17 6 -1.1389 2.8632 2.1200 18 8 -1.2820 2.4546 3.2578 19 6 -2.2555 3.5076 1.4282 20 7 -2.2175 4.0124 0.1363 21 1 -1.4435 3.9926 -0.4479 22 6 -3.4420 4.5456 -0.1909 23 6 -3.9323 5.1654 -1.3379 24 6 -5.2357 5.6072 -1.3735 25 6 -6.0701 5.4434 -0.2751 26 6 -5.6118 4.8392 0.8602 27 6 -4.2916 4.3816 0.9195 28 6 -3.5039 3.7027 1.9496 29 8 -3.9296 3.3408 3.1856 30 6 -3.7660 4.2978 4.2341 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8932 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 4.8967 3.6429 -0.6482 37 1 3.1705 0.2238 2.1329 38 1 4.3761 1.2146 1.2767 39 1 3.7784 1.7239 2.8739 40 1 1.4080 2.6270 3.0886 41 1 0.8800 1.0493 2.4557 42 1 0.1606 3.0427 0.5890 43 1 -3.2916 5.2992 -2.1970 44 1 -5.6131 6.0871 -2.2644 45 1 -7.0899 5.7962 -0.3198 46 1 -6.2667 4.7151 1.7099 47 1 -2.7083 4.5361 4.3468 48 1 -4.3186 5.2045 3.9879 49 1 -4.1459 3.8825 5.1676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157184346.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:39 Heat of formation + Delta-G solvation = 7.286740 kcal Electronic energy + Delta-G solvation = -31507.535092 eV Core-core repulsion = 27436.315768 eV Total energy + Delta-G solvation = -4071.219325 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.45494 -39.14766 -37.93563 -36.97530 -36.62076 -33.77045 -31.97558 -31.62351 -31.23076 -29.56610 -28.93595 -28.24236 -26.79471 -25.80249 -24.03277 -23.37686 -22.15493 -21.77916 -21.02240 -19.84667 -19.37438 -18.32131 -17.21757 -16.95958 -16.54360 -16.07360 -15.63890 -15.23041 -15.06367 -14.83005 -14.58160 -14.44580 -14.24761 -13.98859 -13.81453 -13.74192 -13.33914 -12.98485 -12.76417 -12.41181 -12.22286 -11.96315 -11.91420 -11.76982 -11.66123 -11.53604 -11.14783 -11.13724 -11.03646 -10.91620 -10.77117 -10.37981 -10.17583 -9.99282 -9.71961 -9.67909 -9.62621 -9.51906 -8.65283 -8.58651 -8.31552 -7.72392 -6.76937 -5.98559 -3.47795 0.71779 1.48601 1.93922 2.82744 3.19988 3.29576 3.31612 3.42676 3.53262 3.72085 3.99376 4.31176 4.57085 4.85669 4.91667 5.11808 5.15926 5.23179 5.30792 5.36909 5.37655 5.41597 5.50403 5.59889 5.73080 5.81715 5.90611 5.99326 6.09706 6.18008 6.20333 6.31655 6.34841 6.41009 6.41737 6.48441 6.50263 6.53985 6.61862 6.77053 6.84968 6.88620 6.94362 7.10185 7.30336 7.39270 7.49508 7.65314 7.66833 7.95859 8.32751 8.50919 9.05880 9.67268 10.25021 11.07877 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010845 B = 0.003927 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.179879 B = 7128.486271 C = 8739.149906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.140 3.860 3 N -0.583 5.583 4 C -0.267 4.267 5 H 0.064 0.936 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.895 3.105 9 H -0.287 1.287 10 H -0.290 1.290 11 H -0.278 1.278 12 C 0.176 3.824 13 H 0.100 0.900 14 C -0.144 4.144 15 C 0.102 3.898 16 N -0.696 5.696 17 C 0.570 3.430 18 O -0.527 6.527 19 C 0.020 3.980 20 N -0.574 5.574 21 H 0.426 0.574 22 C 0.129 3.871 23 C -0.133 4.133 24 C -0.088 4.088 25 C -0.154 4.154 26 C -0.055 4.055 27 C -0.134 4.134 28 C 0.086 3.914 29 O -0.295 6.295 30 C 0.040 3.960 31 H 0.051 0.949 32 H 0.044 0.956 33 H 0.034 0.966 34 H 0.041 0.959 35 H 0.038 0.962 36 H 0.255 0.745 37 H 0.031 0.969 38 H 0.079 0.921 39 H 0.033 0.967 40 H 0.056 0.944 41 H 0.058 0.942 42 H 0.406 0.594 43 H 0.126 0.874 44 H 0.126 0.874 45 H 0.123 0.877 46 H 0.123 0.877 47 H 0.048 0.952 48 H 0.040 0.960 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.701 4.995 2.481 15.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.397 4.397 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.724 3.276 9 H -0.214 1.214 10 H -0.216 1.216 11 H -0.203 1.203 12 C 0.069 3.931 13 H 0.117 0.883 14 C -0.204 4.204 15 C -0.023 4.023 16 N -0.346 5.346 17 C 0.355 3.645 18 O -0.405 6.405 19 C -0.090 4.090 20 N -0.181 5.181 21 H 0.265 0.735 22 C 0.019 3.981 23 C -0.154 4.154 24 C -0.107 4.107 25 C -0.173 4.173 26 C -0.074 4.074 27 C -0.139 4.139 28 C 0.032 3.968 29 O -0.209 6.209 30 C -0.055 4.055 31 H 0.070 0.930 32 H 0.063 0.937 33 H 0.053 0.947 34 H 0.059 0.941 35 H 0.056 0.944 36 H 0.066 0.934 37 H 0.050 0.950 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.242 0.758 43 H 0.144 0.856 44 H 0.144 0.856 45 H 0.141 0.859 46 H 0.141 0.859 47 H 0.067 0.933 48 H 0.059 0.941 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -14.507 4.565 3.332 15.569 hybrid contribution 0.619 0.985 -1.534 1.925 sum -13.888 5.550 1.798 15.064 Atomic orbital electron populations 1.22445 0.99974 0.99207 1.01353 1.20764 0.91616 0.87378 0.98837 1.43902 1.76010 1.08344 1.02239 1.19095 1.08799 1.18370 0.93443 0.91843 1.25170 0.94495 1.01338 0.97740 1.70003 1.07762 1.35783 1.39436 0.86429 0.77232 0.81795 0.82131 1.21427 1.21605 1.20341 1.20502 0.88856 0.99560 0.84198 0.88261 1.22018 1.01047 0.98012 0.99284 1.22249 0.87751 0.96460 0.95860 1.45892 1.10930 1.59046 1.18767 1.16995 0.81675 0.79855 0.85989 1.90851 1.82581 1.49875 1.17164 1.20628 0.95985 1.06116 0.86314 1.41928 1.11967 1.50964 1.13265 0.73496 1.18146 0.85132 0.98977 0.95821 1.20152 0.96683 1.02538 0.95991 1.20860 0.92639 0.98754 0.98491 1.20622 1.00086 1.02956 0.93653 1.20300 0.92954 0.96014 0.98101 1.19349 0.95106 1.05091 0.94383 1.18544 0.89591 1.01976 0.86653 1.85975 1.81083 1.40360 1.13497 1.22968 1.01191 0.91915 0.89412 0.93030 0.93662 0.94686 0.94052 0.94404 0.93446 0.95037 0.90233 0.94761 0.92576 0.92399 0.75784 0.85591 0.85563 0.85909 0.85882 0.93288 0.94108 0.88973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.07 9.87 37.16 0.37 -2.70 16 2 C 0.14 2.77 5.67 -4.04 -0.02 2.75 16 3 N -0.58 -12.61 1.85 -165.67 -0.31 -12.91 16 4 C -0.27 -6.35 9.26 -15.06 -0.14 -6.49 16 5 H 0.06 1.52 7.89 -52.49 -0.41 1.10 16 6 C 0.01 0.32 4.85 -17.43 -0.08 0.24 16 7 N -0.89 -22.76 10.60 55.49 0.59 -22.18 16 8 Si 0.89 19.43 29.59 -169.99 -5.03 14.40 16 9 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 12 C 0.18 3.63 1.92 -67.93 -0.13 3.50 16 13 H 0.10 2.32 6.04 -51.93 -0.31 2.01 16 14 C -0.14 -2.86 9.05 37.16 0.34 -2.52 16 15 C 0.10 1.90 4.34 -4.04 -0.02 1.88 16 16 N -0.70 -12.38 3.98 -61.73 -0.25 -12.63 16 17 C 0.57 10.40 7.54 -13.02 -0.10 10.30 16 18 O -0.53 -10.90 16.19 -6.96 -0.11 -11.01 16 19 C 0.02 0.32 6.98 -82.05 -0.57 -0.25 16 20 N -0.57 -8.14 6.04 -7.24 -0.04 -8.19 16 21 H 0.43 5.49 8.08 -40.82 -0.33 5.16 16 22 C 0.13 1.76 7.25 -83.97 -0.61 1.15 16 23 C -0.13 -1.50 10.08 -39.40 -0.40 -1.90 16 24 C -0.09 -0.86 10.01 -39.54 -0.40 -1.26 16 25 C -0.15 -1.53 9.97 -39.95 -0.40 -1.92 16 26 C -0.06 -0.65 10.06 -39.59 -0.40 -1.05 16 27 C -0.13 -1.92 6.35 -105.06 -0.67 -2.59 16 28 C 0.09 1.40 6.47 -36.87 -0.24 1.16 16 29 O -0.30 -4.81 9.74 -30.74 -0.30 -5.11 16 30 C 0.04 0.51 11.13 101.05 1.12 1.63 16 31 H 0.05 0.96 4.99 -51.93 -0.26 0.71 16 32 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.04 0.85 8.09 -51.93 -0.42 0.43 16 35 H 0.04 0.72 6.45 -51.93 -0.33 0.39 16 36 H 0.26 6.48 8.31 -40.82 -0.34 6.14 16 37 H 0.03 0.58 6.67 -51.93 -0.35 0.23 16 38 H 0.08 1.80 7.40 -51.93 -0.38 1.41 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.06 1.11 7.05 -51.93 -0.37 0.75 16 42 H 0.41 7.20 6.91 -40.82 -0.28 6.92 16 43 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 44 H 0.13 0.89 8.06 -52.48 -0.42 0.47 16 45 H 0.12 0.89 8.06 -52.49 -0.42 0.47 16 46 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 47 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 48 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 49 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 LS Contribution 397.18 15.07 5.99 5.99 Total: -1.00 -28.25 397.18 -9.04 -37.29 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: -7.24 Total: 12.40 kcal Atomic # 6 Polarization: 4.28 SS G_CDS: -2.34 Total: 1.94 kcal Atomic # 7 Polarization: -55.89 SS G_CDS: -0.01 Total: -55.90 kcal Atomic # 8 Polarization: -15.71 SS G_CDS: -0.41 Total: -16.12 kcal Atomic # 14 Polarization: 19.43 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -28.25 -9.04 -37.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157184346.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.578 kcal (2) G-P(sol) polarization free energy of solvation -28.250 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds