Wall clock time and date at job start Wed Apr 1 2020 05:03:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47537 * 2 1 4 4 C 1.36941 * 119.99475 * 275.73421 * 3 2 1 5 5 H 1.07998 * 120.00359 * 33.26935 * 4 3 2 6 6 C 1.38813 * 119.99840 * 213.26447 * 4 3 2 7 7 N 1.31625 * 119.99717 * 17.26953 * 6 4 3 8 8 Si 1.86800 * 120.00314 * 197.26823 * 6 4 3 9 9 H 1.48494 * 109.46940 * 89.99976 * 8 6 4 10 10 H 1.48502 * 109.46926 * 210.00220 * 8 6 4 11 11 H 1.48504 * 109.46771 * 329.99962 * 8 6 4 12 12 C 1.46496 * 120.00403 * 95.72632 * 3 2 1 13 13 H 1.08994 * 109.47383 * 180.08707 * 12 3 2 14 14 C 1.53002 * 109.46606 * 60.08595 * 12 3 2 15 15 C 1.53001 * 109.47235 * 300.08992 * 12 3 2 16 16 N 1.46495 * 109.47059 * 304.99506 * 15 12 3 17 17 C 1.34781 * 119.99744 * 179.97438 * 16 15 12 18 18 O 1.21745 * 119.99981 * 0.02562 * 17 16 15 19 19 C 1.46306 * 119.99624 * 180.27765 * 17 16 15 20 20 N 1.38753 * 125.41892 * 359.74678 * 19 17 16 21 21 H 0.96989 * 125.11409 * 359.94946 * 20 19 17 22 22 C 1.37504 * 109.76822 * 179.97438 * 20 19 17 23 23 C 1.39292 * 132.99672 * 180.02562 * 22 20 19 24 24 C 1.37670 * 119.82377 * 179.97438 * 23 22 20 25 25 C 1.38910 * 120.69334 * 0.08301 * 24 23 22 26 26 C 1.36527 * 120.53660 * 359.93814 * 25 24 23 27 27 C 1.39854 * 119.79538 * 0.02562 * 26 25 24 28 28 C 1.36690 * 125.41485 * 179.44587 * 19 17 16 29 29 O 1.35644 * 126.59561 * 0.03144 * 28 19 17 30 30 C 1.42899 * 116.99631 * 90.02949 * 29 28 19 31 31 H 1.09001 * 109.47496 * 300.00504 * 1 2 3 32 32 H 1.09002 * 109.47143 * 60.00309 * 1 2 3 33 33 H 1.08998 * 109.47569 * 180.02562 * 1 2 3 34 34 H 1.09000 * 109.46762 * 239.99379 * 2 1 3 35 35 H 1.09000 * 109.46922 * 120.00186 * 2 1 3 36 36 H 0.96999 * 119.99578 * 179.97438 * 7 6 4 37 37 H 1.08994 * 109.47342 * 300.00137 * 14 12 3 38 38 H 1.09003 * 109.47173 * 60.00608 * 14 12 3 39 39 H 1.09001 * 109.46718 * 179.97438 * 14 12 3 40 40 H 1.09002 * 109.47162 * 184.99426 * 15 12 3 41 41 H 1.09004 * 109.47063 * 64.99733 * 15 12 3 42 42 H 0.96993 * 120.00344 * 0.02562 * 16 15 12 43 43 H 1.07997 * 120.08728 * 359.96268 * 23 22 20 44 44 H 1.08004 * 119.65487 * 180.02562 * 24 23 22 45 45 H 1.08000 * 119.72957 * 179.97438 * 25 24 23 46 46 H 1.07998 * 120.10444 * 180.02562 * 26 25 24 47 47 H 1.09007 * 109.46916 * 299.99750 * 30 29 28 48 48 H 1.08998 * 109.47523 * 60.00104 * 30 29 28 49 49 H 1.09002 * 109.46842 * 180.02562 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1349 2.0661 -1.1801 5 1 1.4370 1.8809 -1.9832 6 6 3.1501 2.9985 -1.3440 7 7 4.1871 2.9916 -0.5334 8 14 3.0446 4.2629 -2.7150 9 1 2.3489 5.4765 -2.2166 10 1 4.4141 4.6252 -3.1606 11 1 2.2870 3.6921 -3.8575 12 6 2.3820 2.0296 1.2623 13 1 2.7190 3.0470 1.0643 14 6 3.5076 1.2412 1.9348 15 6 1.1629 2.0669 2.1862 16 7 0.0467 2.7175 1.4957 17 6 -1.1389 2.8632 2.1200 18 8 -1.2820 2.4546 3.2578 19 6 -2.2555 3.5076 1.4282 20 7 -2.2175 4.0124 0.1363 21 1 -1.4435 3.9926 -0.4479 22 6 -3.4420 4.5456 -0.1909 23 6 -3.9323 5.1654 -1.3379 24 6 -5.2357 5.6072 -1.3735 25 6 -6.0701 5.4434 -0.2751 26 6 -5.6118 4.8392 0.8602 27 6 -4.2916 4.3816 0.9195 28 6 -3.5039 3.7027 1.9496 29 8 -3.9296 3.3408 3.1856 30 6 -3.7660 4.2978 4.2341 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 1.8932 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 4.8967 3.6429 -0.6482 37 1 3.1705 0.2238 2.1329 38 1 4.3761 1.2146 1.2767 39 1 3.7784 1.7239 2.8739 40 1 1.4080 2.6270 3.0886 41 1 0.8800 1.0493 2.4557 42 1 0.1606 3.0427 0.5890 43 1 -3.2916 5.2992 -2.1970 44 1 -5.6131 6.0871 -2.2644 45 1 -7.0899 5.7962 -0.3198 46 1 -6.2667 4.7151 1.7099 47 1 -2.7083 4.5361 4.3468 48 1 -4.3186 5.2045 3.9879 49 1 -4.1459 3.8825 5.1676 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157184346.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:38 Heat of formation + Delta-G solvation = -7.298805 kcal Electronic energy + Delta-G solvation = -31508.167569 eV Core-core repulsion = 27436.315768 eV Total energy + Delta-G solvation = -4071.851801 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.52433 -40.53132 -39.10140 -38.53597 -37.63140 -35.32937 -33.75788 -32.81202 -32.56286 -30.61931 -29.99984 -29.89657 -27.90582 -27.17018 -25.82132 -24.54535 -23.36234 -23.09828 -22.11772 -21.20622 -20.95513 -19.54543 -18.69805 -18.21329 -17.61890 -17.33884 -16.88397 -16.70949 -16.49955 -16.33030 -15.80492 -15.67126 -15.45183 -15.23943 -14.96517 -14.84645 -14.71534 -14.36553 -14.04622 -14.01063 -13.81229 -13.54741 -13.22944 -12.82308 -12.80413 -12.74535 -12.70585 -12.59253 -12.56122 -12.43891 -12.07864 -11.98354 -11.90420 -11.39792 -11.32888 -11.20916 -10.87454 -10.66168 -10.46297 -10.08459 -9.31482 -8.74052 -8.56339 -7.84632 -5.35360 -0.33528 0.59912 0.88422 1.46656 1.52047 1.57608 1.74752 2.07738 2.18445 2.51803 2.78524 2.94779 3.29545 3.55504 3.63080 3.73073 4.13088 4.18101 4.21138 4.25365 4.41128 4.42429 4.47112 4.50648 4.51619 4.55977 4.63189 4.69252 4.76684 4.77389 4.84303 4.90565 4.93513 5.03280 5.08462 5.19277 5.23878 5.27677 5.35306 5.45883 5.53297 5.54664 5.64463 5.66730 5.73057 5.84920 6.05267 6.29647 6.46735 6.51896 6.55281 7.07256 7.21792 7.89262 8.42683 9.19337 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.010845 B = 0.003927 C = 0.003203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.179879 B = 7128.486271 C = 8739.149906 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.140 3.860 3 N -0.591 5.591 4 C -0.265 4.265 5 H 0.062 0.938 6 C -0.029 4.029 7 N -0.912 5.912 8 Si 0.950 3.050 9 H -0.283 1.283 10 H -0.304 1.304 11 H -0.272 1.272 12 C 0.184 3.816 13 H 0.072 0.928 14 C -0.136 4.136 15 C 0.115 3.885 16 N -0.692 5.692 17 C 0.573 3.427 18 O -0.558 6.558 19 C -0.009 4.009 20 N -0.571 5.571 21 H 0.428 0.572 22 C 0.119 3.881 23 C -0.145 4.145 24 C -0.076 4.076 25 C -0.145 4.145 26 C -0.066 4.066 27 C -0.158 4.158 28 C 0.081 3.919 29 O -0.317 6.317 30 C 0.039 3.961 31 H 0.042 0.958 32 H 0.039 0.961 33 H 0.054 0.946 34 H 0.032 0.968 35 H 0.044 0.956 36 H 0.249 0.751 37 H 0.042 0.958 38 H 0.049 0.951 39 H 0.050 0.950 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.406 0.594 43 H 0.143 0.857 44 H 0.162 0.838 45 H 0.156 0.844 46 H 0.135 0.865 47 H 0.031 0.969 48 H 0.060 0.940 49 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.351 5.982 1.355 18.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.015 3.985 3 N -0.313 5.313 4 C -0.395 4.395 5 H 0.080 0.920 6 C -0.227 4.227 7 N -0.556 5.556 8 Si 0.780 3.220 9 H -0.209 1.209 10 H -0.231 1.231 11 H -0.197 1.197 12 C 0.076 3.924 13 H 0.090 0.910 14 C -0.195 4.195 15 C -0.011 4.011 16 N -0.342 5.342 17 C 0.360 3.640 18 O -0.438 6.438 19 C -0.119 4.119 20 N -0.179 5.179 21 H 0.268 0.732 22 C 0.009 3.991 23 C -0.166 4.166 24 C -0.095 4.095 25 C -0.164 4.164 26 C -0.085 4.085 27 C -0.162 4.162 28 C 0.027 3.973 29 O -0.232 6.232 30 C -0.055 4.055 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.068 0.932 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.243 0.757 43 H 0.161 0.839 44 H 0.179 0.821 45 H 0.174 0.826 46 H 0.153 0.847 47 H 0.050 0.950 48 H 0.078 0.922 49 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -17.177 5.548 2.190 18.183 hybrid contribution 1.307 0.698 -1.211 1.914 sum -15.870 6.246 0.979 17.084 Atomic orbital electron populations 1.22264 0.98386 1.00235 1.00611 1.20813 0.92670 0.86341 0.98711 1.44020 1.76120 1.09117 1.02074 1.19248 1.08161 1.18150 0.93928 0.92027 1.25717 0.94401 1.02924 0.99616 1.70139 1.08289 1.36252 1.40939 0.85544 0.76242 0.80062 0.80178 1.20923 1.23084 1.19701 1.20345 0.89715 0.98067 0.84256 0.91006 1.21886 0.99554 0.98802 0.99249 1.22003 0.87203 0.96450 0.95415 1.45798 1.10773 1.58966 1.18634 1.17188 0.81910 0.79265 0.85627 1.90816 1.83139 1.51369 1.18439 1.20323 0.95659 1.08258 0.87625 1.41817 1.12500 1.51094 1.12502 0.73215 1.18521 0.84674 0.99271 0.96615 1.20496 0.97821 1.02517 0.95716 1.21354 0.91702 0.96921 0.99524 1.21054 1.01556 1.01175 0.92620 1.20570 0.92100 0.96266 0.99534 1.19524 0.96426 1.06250 0.94032 1.18898 0.89944 1.01489 0.86984 1.85902 1.81186 1.41963 1.14177 1.23118 1.00538 0.92435 0.89426 0.93864 0.94204 0.92750 0.94927 0.93723 0.94207 0.93880 0.93166 0.93092 0.92288 0.92687 0.75746 0.83941 0.82086 0.82615 0.84718 0.95048 0.92167 0.86836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.48 9.87 71.98 0.71 -4.77 16 2 C 0.14 5.49 5.67 86.38 0.49 5.98 16 3 N -0.59 -25.70 1.85 -678.06 -1.25 -26.96 16 4 C -0.26 -12.60 9.26 84.03 0.78 -11.82 16 5 H 0.06 2.93 7.89 -2.91 -0.02 2.91 16 6 C -0.03 -1.41 4.85 84.86 0.41 -1.00 16 7 N -0.91 -47.76 10.60 21.65 0.23 -47.53 16 8 Si 0.95 40.17 29.59 68.60 2.03 42.20 16 9 H -0.28 -11.63 7.11 99.48 0.71 -10.92 16 10 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 11 H -0.27 -11.12 7.11 99.48 0.71 -10.42 16 12 C 0.18 7.66 1.92 44.99 0.09 7.74 16 13 H 0.07 3.45 6.04 -2.39 -0.01 3.43 16 14 C -0.14 -5.41 9.05 71.98 0.65 -4.76 16 15 C 0.11 4.32 4.34 86.38 0.37 4.69 16 16 N -0.69 -25.09 3.98 -467.41 -1.86 -26.95 16 17 C 0.57 21.45 7.54 86.34 0.65 22.10 16 18 O -0.56 -23.67 16.19 7.08 0.11 -23.56 16 19 C -0.01 -0.30 6.98 39.78 0.28 -0.02 16 20 N -0.57 -16.24 6.04 -176.83 -1.07 -17.31 16 21 H 0.43 11.12 8.08 -92.72 -0.75 10.37 16 22 C 0.12 3.12 7.25 39.13 0.28 3.40 16 23 C -0.14 -2.89 10.08 22.39 0.23 -2.67 16 24 C -0.08 -1.17 10.01 22.30 0.22 -0.95 16 25 C -0.15 -2.30 9.97 22.03 0.22 -2.09 16 26 C -0.07 -1.41 10.06 22.26 0.22 -1.18 16 27 C -0.16 -4.38 6.35 -20.15 -0.13 -4.51 16 28 C 0.08 2.67 6.47 24.03 0.16 2.82 16 29 O -0.32 -10.44 9.74 -78.02 -0.76 -11.20 16 30 C 0.04 0.98 11.13 113.37 1.26 2.24 16 31 H 0.04 1.59 4.99 -2.39 -0.01 1.58 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.03 1.32 8.09 -2.39 -0.02 1.30 16 35 H 0.04 1.68 6.45 -2.39 -0.02 1.66 16 36 H 0.25 12.92 8.31 -92.71 -0.77 12.15 16 37 H 0.04 1.58 6.67 -2.39 -0.02 1.56 16 38 H 0.05 2.30 7.40 -2.39 -0.02 2.28 16 39 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.06 2.19 8.14 -2.39 -0.02 2.17 16 41 H 0.05 2.11 7.05 -2.39 -0.02 2.10 16 42 H 0.41 14.70 6.91 -92.71 -0.64 14.06 16 43 H 0.14 2.31 8.06 -2.91 -0.02 2.28 16 44 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 45 H 0.16 1.46 8.06 -2.91 -0.02 1.43 16 46 H 0.13 2.45 8.06 -2.91 -0.02 2.43 16 47 H 0.03 0.88 8.14 -2.38 -0.02 0.86 16 48 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 49 H 0.11 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -61.79 397.18 3.92 -57.87 By element: Atomic # 1 Polarization: 38.60 SS G_CDS: -0.40 Total: 38.20 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: 6.90 Total: 15.22 kcal Atomic # 7 Polarization: -114.79 SS G_CDS: -3.95 Total: -118.74 kcal Atomic # 8 Polarization: -34.11 SS G_CDS: -0.65 Total: -34.75 kcal Atomic # 14 Polarization: 40.17 SS G_CDS: 2.03 Total: 42.20 kcal Total: -61.79 3.92 -57.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157184346.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.570 kcal (2) G-P(sol) polarization free energy of solvation -61.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds