Wall clock time and date at job start Wed Apr 1 2020 05:04:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47242 * 2 1 4 4 C 1.36944 * 119.99773 * 274.03347 * 3 2 1 5 5 H 1.07998 * 120.00177 * 174.70812 * 4 3 2 6 6 C 1.38816 * 119.99928 * 354.71100 * 4 3 2 7 7 N 1.31624 * 119.99675 * 31.38193 * 6 4 3 8 8 Si 1.86794 * 120.00022 * 211.38120 * 6 4 3 9 9 H 1.48506 * 109.47192 * 84.99258 * 8 6 4 10 10 H 1.48494 * 109.47331 * 204.99815 * 8 6 4 11 11 H 1.48500 * 109.47020 * 324.99790 * 8 6 4 12 12 C 1.46501 * 120.00206 * 94.03682 * 3 2 1 13 13 H 1.09002 * 109.46905 * 179.97438 * 12 3 2 14 14 C 1.52999 * 109.46914 * 60.00080 * 12 3 2 15 15 C 1.52993 * 109.46891 * 299.99775 * 12 3 2 16 16 N 1.46502 * 109.47477 * 304.99805 * 15 12 3 17 17 C 1.34777 * 119.99916 * 179.97438 * 16 15 12 18 18 O 1.21277 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99730 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47109 * 180.02562 * 19 17 16 21 21 H 1.09003 * 110.45606 * 54.29241 * 20 19 17 22 22 C 1.51134 * 110.51262 * 176.89833 * 20 19 17 23 23 C 1.37446 * 133.06437 * 298.83530 * 22 20 19 24 24 C 1.38396 * 120.00137 * 179.91223 * 23 22 20 25 25 C 1.38304 * 119.83099 * 359.88778 * 24 23 22 26 26 C 1.37940 * 120.37370 * 0.02562 * 25 24 23 27 27 C 1.39205 * 106.18201 * 118.59850 * 22 20 19 28 28 N 1.39534 * 110.26841 * 0.11991 * 27 22 20 29 29 C 1.34374 * 112.24437 * 359.92369 * 28 27 22 30 30 O 1.21290 * 126.43885 * 180.02562 * 29 28 27 31 31 H 1.08995 * 109.47658 * 300.00591 * 1 2 3 32 32 H 1.09002 * 109.46409 * 60.00262 * 1 2 3 33 33 H 1.08998 * 109.47329 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47392 * 239.99402 * 2 1 3 35 35 H 1.09006 * 109.46882 * 119.99871 * 2 1 3 36 36 H 0.97004 * 119.99338 * 179.97438 * 7 6 4 37 37 H 1.09001 * 109.46687 * 179.97438 * 14 12 3 38 38 H 1.08993 * 109.47089 * 299.99829 * 14 12 3 39 39 H 1.08993 * 109.47331 * 60.00156 * 14 12 3 40 40 H 1.09004 * 109.47117 * 184.99883 * 15 12 3 41 41 H 1.08997 * 109.47092 * 65.00229 * 15 12 3 42 42 H 0.96998 * 119.99704 * 0.02562 * 16 15 12 43 43 H 1.08994 * 109.47338 * 59.99837 * 19 17 16 44 44 H 1.09000 * 109.46788 * 299.99605 * 19 17 16 45 45 H 1.07995 * 119.95102 * 359.79747 * 23 22 20 46 46 H 1.08004 * 120.08357 * 179.91300 * 24 23 22 47 47 H 1.07999 * 119.81089 * 179.97438 * 25 24 23 48 48 H 1.07997 * 119.93316 * 179.97438 * 26 25 24 49 49 H 0.96998 * 123.87606 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1679 2.0545 -1.1831 5 1 2.4456 3.0982 -1.1791 6 6 1.9627 1.3955 -2.3875 7 7 1.0861 0.4164 -2.4608 8 14 2.9305 1.8983 -3.9039 9 1 4.2413 1.2002 -3.9086 10 1 2.1680 1.5279 -5.1231 11 1 3.1519 3.3666 -3.8856 12 6 2.3468 2.0421 1.2656 13 1 2.6912 3.0569 1.0668 14 6 3.4517 1.2593 1.9779 15 6 1.1020 2.0902 2.1537 16 7 0.0067 2.7350 1.4251 17 6 -1.1960 2.8884 2.0137 18 8 -1.3714 2.4931 3.1468 19 6 -2.3228 3.5512 1.2639 20 6 -3.5676 3.5994 2.1522 21 1 -3.3379 4.0779 3.1042 22 6 -4.6908 4.3278 1.4508 23 6 -4.8257 5.6111 0.9772 24 6 -6.0022 6.0015 0.3618 25 6 -7.0391 5.0968 0.2230 26 6 -6.9076 3.8074 0.6951 27 6 -5.7261 3.4070 1.3164 28 7 -5.3561 2.1799 1.8681 29 6 -4.1129 2.2052 2.3773 30 8 -3.5359 1.2840 2.9154 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.9424 -0.0438 -3.3026 37 1 3.6963 1.7513 2.9193 38 1 3.1077 0.2444 2.1766 39 1 4.3385 1.2251 1.3451 40 1 1.3219 2.6592 3.0571 41 1 0.8100 1.0758 2.4254 42 1 0.1469 3.0508 0.5187 43 1 -2.5424 2.9821 0.3606 44 1 -2.0312 4.5657 0.9923 45 1 -4.0138 6.3146 1.0874 46 1 -6.1101 7.0099 -0.0096 47 1 -7.9572 5.4019 -0.2569 48 1 -7.7220 3.1070 0.5834 49 1 -5.9302 1.3982 1.8818 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157264701.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:30 Heat of formation + Delta-G solvation = -1.659999 kcal Electronic energy + Delta-G solvation = -31228.674701 eV Core-core repulsion = 27157.067417 eV Total energy + Delta-G solvation = -4071.607284 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -41.67811 -39.13935 -38.31944 -36.94032 -35.65420 -33.83130 -33.48184 -32.08030 -30.41757 -30.10935 -29.21468 -28.38567 -26.73940 -24.82547 -23.69860 -22.76501 -21.75414 -21.57639 -20.93228 -19.56604 -18.99948 -17.97516 -17.10775 -16.93947 -16.46348 -16.01229 -15.70924 -15.41784 -15.32418 -14.70648 -14.51133 -14.18620 -14.03613 -13.72301 -13.46119 -13.12243 -13.05413 -12.77100 -12.64383 -12.53001 -12.28192 -12.15114 -12.00067 -11.83468 -11.55465 -11.41535 -11.11862 -11.03181 -10.91177 -10.75597 -10.68712 -10.56389 -10.28241 -9.89850 -9.79889 -9.59456 -9.33341 -9.24485 -9.05038 -8.31613 -8.19405 -8.16255 -6.99735 -5.84500 -3.04702 0.99826 1.10435 2.53599 2.93059 3.21853 3.38057 3.46931 3.49372 3.56754 3.77557 4.04726 4.34311 4.47355 4.63291 4.76709 4.88019 5.07944 5.14818 5.19586 5.22136 5.38336 5.42492 5.50997 5.58472 5.63356 5.70762 5.86056 5.92339 5.97371 6.12756 6.16802 6.19556 6.26703 6.36453 6.41638 6.47586 6.68455 6.73259 6.76806 6.87079 6.91828 7.05786 7.14206 7.23352 7.28395 7.67691 7.85289 8.06102 8.14896 8.22623 8.31501 8.86844 9.21456 9.85887 10.31733 11.18839 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011802 B = 0.003220 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.861636 B = 8692.843214 C = 9785.943871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.166 3.834 3 N -0.594 5.594 4 C -0.262 4.262 5 H 0.076 0.924 6 C 0.010 3.990 7 N -0.880 5.880 8 Si 0.879 3.121 9 H -0.290 1.290 10 H -0.296 1.296 11 H -0.283 1.283 12 C 0.162 3.838 13 H 0.067 0.933 14 C -0.158 4.158 15 C 0.108 3.892 16 N -0.703 5.703 17 C 0.502 3.498 18 O -0.534 6.534 19 C -0.119 4.119 20 C -0.062 4.062 21 H 0.128 0.872 22 C -0.139 4.139 23 C -0.061 4.061 24 C -0.145 4.145 25 C -0.085 4.085 26 C -0.145 4.145 27 C 0.152 3.848 28 N -0.669 5.669 29 C 0.528 3.472 30 O -0.458 6.458 31 H 0.023 0.977 32 H 0.085 0.915 33 H 0.012 0.988 34 H 0.083 0.917 35 H 0.006 0.994 36 H 0.252 0.748 37 H 0.044 0.956 38 H 0.051 0.949 39 H 0.057 0.943 40 H 0.051 0.949 41 H 0.060 0.940 42 H 0.410 0.590 43 H 0.097 0.903 44 H 0.104 0.896 45 H 0.129 0.871 46 H 0.128 0.872 47 H 0.128 0.872 48 H 0.124 0.876 49 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.860 10.173 5.947 18.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.042 3.958 3 N -0.316 5.316 4 C -0.390 4.390 5 H 0.093 0.907 6 C -0.189 4.189 7 N -0.524 5.524 8 Si 0.709 3.291 9 H -0.218 1.218 10 H -0.222 1.222 11 H -0.208 1.208 12 C 0.053 3.947 13 H 0.085 0.915 14 C -0.218 4.218 15 C -0.018 4.018 16 N -0.354 5.354 17 C 0.287 3.713 18 O -0.411 6.411 19 C -0.159 4.159 20 C -0.083 4.083 21 H 0.146 0.854 22 C -0.142 4.142 23 C -0.080 4.080 24 C -0.165 4.165 25 C -0.103 4.103 26 C -0.167 4.167 27 C 0.054 3.946 28 N -0.313 5.313 29 C 0.314 3.686 30 O -0.327 6.327 31 H 0.041 0.959 32 H 0.104 0.896 33 H 0.031 0.969 34 H 0.101 0.899 35 H 0.024 0.976 36 H 0.062 0.938 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.077 0.923 40 H 0.070 0.930 41 H 0.078 0.922 42 H 0.246 0.754 43 H 0.116 0.884 44 H 0.122 0.878 45 H 0.147 0.853 46 H 0.146 0.854 47 H 0.146 0.854 48 H 0.142 0.858 49 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -13.535 9.253 6.974 17.817 hybrid contribution 0.092 -0.155 -1.458 1.469 sum -13.442 9.098 5.516 17.143 Atomic orbital electron populations 1.22398 0.99101 0.97970 1.01353 1.20874 0.92522 0.84495 0.97938 1.44239 1.75661 1.11240 1.00478 1.19202 1.41624 0.94802 0.83329 0.90661 1.24689 0.98753 0.98272 0.97142 1.70298 1.30385 1.26640 1.25079 0.86647 0.81344 0.77922 0.83224 1.21755 1.22245 1.20845 1.20544 0.91278 0.96283 0.86608 0.91486 1.22185 0.99693 1.00674 0.99229 1.21948 0.88136 0.97291 0.94452 1.45813 1.10577 1.60031 1.19015 1.20275 0.83712 0.80138 0.87219 1.90736 1.82217 1.49638 1.18528 1.21429 0.91846 1.03546 0.99078 1.20396 0.93458 0.93476 1.01021 0.85433 1.19857 0.95322 0.94691 1.04310 1.20245 0.97878 0.93783 0.96049 1.21044 0.93501 1.00086 1.01827 1.20864 0.98999 0.92365 0.98120 1.20359 0.95912 0.97459 1.02932 1.18287 0.95180 0.85447 0.95678 1.43904 1.17549 1.12392 1.57458 1.20497 0.80384 0.90401 0.77344 1.90908 1.61425 1.41025 1.39362 0.95852 0.89619 0.96940 0.89940 0.97610 0.93794 0.93680 0.92994 0.92347 0.93050 0.92173 0.75405 0.88445 0.87770 0.85302 0.85397 0.85387 0.85760 0.75180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.52 9.27 37.16 0.34 -3.17 16 2 C 0.17 3.93 5.01 -4.04 -0.02 3.91 16 3 N -0.59 -13.38 1.92 -165.66 -0.32 -13.70 16 4 C -0.26 -6.44 9.38 -15.05 -0.14 -6.58 16 5 H 0.08 1.81 7.83 -52.49 -0.41 1.40 16 6 C 0.01 0.25 4.97 -17.43 -0.09 0.16 16 7 N -0.88 -23.40 8.40 55.49 0.47 -22.94 16 8 Si 0.88 20.48 29.65 -169.99 -5.04 15.44 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.30 -7.07 7.11 56.52 0.40 -6.67 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.16 3.05 2.87 -67.93 -0.19 2.86 16 13 H 0.07 1.23 7.78 -51.93 -0.40 0.83 16 14 C -0.16 -2.68 9.18 37.16 0.34 -2.34 16 15 C 0.11 2.00 4.32 -4.04 -0.02 1.98 16 16 N -0.70 -12.70 3.99 -60.29 -0.24 -12.94 16 17 C 0.50 8.95 7.27 -10.98 -0.08 8.87 16 18 O -0.53 -11.22 13.78 -16.52 -0.23 -11.45 16 19 C -0.12 -1.64 5.22 -27.88 -0.15 -1.79 16 20 C -0.06 -0.82 2.60 -92.37 -0.24 -1.06 16 21 H 0.13 1.68 7.96 -51.93 -0.41 1.27 16 22 C -0.14 -1.52 5.69 -104.34 -0.59 -2.12 16 23 C -0.06 -0.54 10.02 -39.81 -0.40 -0.94 16 24 C -0.15 -1.11 10.07 -39.50 -0.40 -1.51 16 25 C -0.08 -0.63 10.02 -39.67 -0.40 -1.03 16 26 C -0.15 -1.25 10.07 -39.27 -0.40 -1.65 16 27 C 0.15 1.65 7.12 -83.57 -0.59 1.05 16 28 N -0.67 -8.01 5.88 -9.62 -0.06 -8.06 16 29 C 0.53 8.24 7.82 -10.83 -0.08 8.15 16 30 O -0.46 -9.23 15.74 -16.53 -0.26 -9.49 16 31 H 0.02 0.53 4.84 -51.93 -0.25 0.28 16 32 H 0.09 2.22 6.30 -51.93 -0.33 1.90 16 33 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.08 2.19 5.84 -51.93 -0.30 1.88 16 35 H 0.01 0.13 6.43 -51.93 -0.33 -0.21 16 36 H 0.25 6.65 8.31 -40.82 -0.34 6.31 16 37 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.05 0.91 6.66 -51.93 -0.35 0.56 16 39 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 40 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 41 H 0.06 1.26 6.92 -51.93 -0.36 0.90 16 42 H 0.41 7.57 7.89 -40.82 -0.32 7.24 16 43 H 0.10 1.42 8.14 -51.93 -0.42 1.00 16 44 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 45 H 0.13 0.91 8.06 -52.49 -0.42 0.48 16 46 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 47 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 48 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 49 H 0.41 4.02 8.96 -40.82 -0.37 3.65 16 LS Contribution 388.38 15.07 5.85 5.85 Total: -1.00 -31.45 388.38 -10.13 -41.58 By element: Atomic # 1 Polarization: 18.12 SS G_CDS: -7.20 Total: 10.92 kcal Atomic # 6 Polarization: 7.89 SS G_CDS: -3.10 Total: 4.79 kcal Atomic # 7 Polarization: -57.49 SS G_CDS: -0.15 Total: -57.64 kcal Atomic # 8 Polarization: -20.45 SS G_CDS: -0.49 Total: -20.94 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.04 Total: 15.44 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -31.45 -10.13 -41.58 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157264701.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.916 kcal (2) G-P(sol) polarization free energy of solvation -31.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.467 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds