Wall clock time and date at job start Wed Apr 1 2020 05:04:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46497 * 109.47242 * 2 1 4 4 C 1.36944 * 119.99773 * 274.03347 * 3 2 1 5 5 H 1.07998 * 120.00177 * 174.70812 * 4 3 2 6 6 C 1.38816 * 119.99928 * 354.71100 * 4 3 2 7 7 N 1.31624 * 119.99675 * 31.38193 * 6 4 3 8 8 Si 1.86794 * 120.00022 * 211.38120 * 6 4 3 9 9 H 1.48506 * 109.47192 * 84.99258 * 8 6 4 10 10 H 1.48494 * 109.47331 * 204.99815 * 8 6 4 11 11 H 1.48500 * 109.47020 * 324.99790 * 8 6 4 12 12 C 1.46501 * 120.00206 * 94.03682 * 3 2 1 13 13 H 1.09002 * 109.46905 * 179.97438 * 12 3 2 14 14 C 1.52999 * 109.46914 * 60.00080 * 12 3 2 15 15 C 1.52993 * 109.46891 * 299.99775 * 12 3 2 16 16 N 1.46502 * 109.47477 * 304.99805 * 15 12 3 17 17 C 1.34777 * 119.99916 * 179.97438 * 16 15 12 18 18 O 1.21277 * 120.00018 * 0.02562 * 17 16 15 19 19 C 1.50706 * 119.99730 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47109 * 180.02562 * 19 17 16 21 21 H 1.09003 * 110.45606 * 54.29241 * 20 19 17 22 22 C 1.51134 * 110.51262 * 176.89833 * 20 19 17 23 23 C 1.37446 * 133.06437 * 298.83530 * 22 20 19 24 24 C 1.38396 * 120.00137 * 179.91223 * 23 22 20 25 25 C 1.38304 * 119.83099 * 359.88778 * 24 23 22 26 26 C 1.37940 * 120.37370 * 0.02562 * 25 24 23 27 27 C 1.39205 * 106.18201 * 118.59850 * 22 20 19 28 28 N 1.39534 * 110.26841 * 0.11991 * 27 22 20 29 29 C 1.34374 * 112.24437 * 359.92369 * 28 27 22 30 30 O 1.21290 * 126.43885 * 180.02562 * 29 28 27 31 31 H 1.08995 * 109.47658 * 300.00591 * 1 2 3 32 32 H 1.09002 * 109.46409 * 60.00262 * 1 2 3 33 33 H 1.08998 * 109.47329 * 180.02562 * 1 2 3 34 34 H 1.09003 * 109.47392 * 239.99402 * 2 1 3 35 35 H 1.09006 * 109.46882 * 119.99871 * 2 1 3 36 36 H 0.97004 * 119.99338 * 179.97438 * 7 6 4 37 37 H 1.09001 * 109.46687 * 179.97438 * 14 12 3 38 38 H 1.08993 * 109.47089 * 299.99829 * 14 12 3 39 39 H 1.08993 * 109.47331 * 60.00156 * 14 12 3 40 40 H 1.09004 * 109.47117 * 184.99883 * 15 12 3 41 41 H 1.08997 * 109.47092 * 65.00229 * 15 12 3 42 42 H 0.96998 * 119.99704 * 0.02562 * 16 15 12 43 43 H 1.08994 * 109.47338 * 59.99837 * 19 17 16 44 44 H 1.09000 * 109.46788 * 299.99605 * 19 17 16 45 45 H 1.07995 * 119.95102 * 359.79747 * 23 22 20 46 46 H 1.08004 * 120.08357 * 179.91300 * 24 23 22 47 47 H 1.07999 * 119.81089 * 179.97438 * 25 24 23 48 48 H 1.07997 * 119.93316 * 179.97438 * 26 25 24 49 49 H 0.96998 * 123.87606 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1679 2.0545 -1.1831 5 1 2.4456 3.0982 -1.1791 6 6 1.9627 1.3955 -2.3875 7 7 1.0861 0.4164 -2.4608 8 14 2.9305 1.8983 -3.9039 9 1 4.2413 1.2002 -3.9086 10 1 2.1680 1.5279 -5.1231 11 1 3.1519 3.3666 -3.8856 12 6 2.3468 2.0421 1.2656 13 1 2.6912 3.0569 1.0668 14 6 3.4517 1.2593 1.9779 15 6 1.1020 2.0902 2.1537 16 7 0.0067 2.7350 1.4251 17 6 -1.1960 2.8884 2.0137 18 8 -1.3714 2.4931 3.1468 19 6 -2.3228 3.5512 1.2639 20 6 -3.5676 3.5994 2.1522 21 1 -3.3379 4.0779 3.1042 22 6 -4.6908 4.3278 1.4508 23 6 -4.8257 5.6111 0.9772 24 6 -6.0022 6.0015 0.3618 25 6 -7.0391 5.0968 0.2230 26 6 -6.9076 3.8074 0.6951 27 6 -5.7261 3.4070 1.3164 28 7 -5.3561 2.1799 1.8681 29 6 -4.1129 2.2052 2.3773 30 8 -3.5359 1.2840 2.9154 31 1 -0.3634 0.5139 0.8899 32 1 -0.3632 0.5138 -0.8901 33 1 -0.3634 -1.0276 0.0005 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 0.9424 -0.0438 -3.3026 37 1 3.6963 1.7513 2.9193 38 1 3.1077 0.2444 2.1766 39 1 4.3385 1.2251 1.3451 40 1 1.3219 2.6592 3.0571 41 1 0.8100 1.0758 2.4254 42 1 0.1469 3.0508 0.5187 43 1 -2.5424 2.9821 0.3606 44 1 -2.0312 4.5657 0.9923 45 1 -4.0138 6.3146 1.0874 46 1 -6.1101 7.0099 -0.0096 47 1 -7.9572 5.4019 -0.2569 48 1 -7.7220 3.1070 0.5834 49 1 -5.9302 1.3982 1.8818 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157264701.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:27 Heat of formation + Delta-G solvation = -19.331006 kcal Electronic energy + Delta-G solvation = -31229.440974 eV Core-core repulsion = 27157.067417 eV Total energy + Delta-G solvation = -4072.373557 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.63889 -40.53865 -39.34867 -38.61031 -36.62182 -35.45988 -34.54997 -33.70475 -32.01374 -31.18628 -30.27564 -29.97156 -27.91227 -26.11441 -25.58390 -23.56150 -23.48926 -22.37547 -22.08358 -20.97499 -20.60273 -18.84523 -18.76476 -18.20500 -17.69049 -17.23165 -17.05207 -16.76219 -16.61533 -16.02826 -15.79590 -15.37368 -15.13516 -14.91965 -14.73882 -14.54457 -14.32535 -14.12482 -14.00806 -13.75993 -13.74538 -13.54137 -13.31828 -13.13664 -12.97243 -12.75273 -12.58364 -12.56334 -12.45311 -12.35321 -12.08870 -11.81369 -11.77575 -11.59887 -11.39071 -11.15070 -11.11584 -10.70834 -10.18262 -9.80139 -9.77505 -8.97799 -8.87885 -7.79158 -4.98681 0.21959 0.44074 1.46391 1.51835 1.59501 1.62175 1.81022 2.01461 2.41605 2.58839 2.89864 3.10092 3.30132 3.35908 3.66171 3.76965 3.93864 4.04584 4.10155 4.21875 4.27716 4.43563 4.47005 4.49768 4.61449 4.63571 4.68271 4.68879 4.80015 4.83592 4.87653 4.99369 5.09117 5.12110 5.20102 5.23931 5.30874 5.36435 5.45910 5.51737 5.62661 5.69047 5.71669 5.73157 5.83728 5.88007 6.12284 6.14760 6.37655 6.76621 6.98908 7.26370 7.44283 7.98816 8.42304 9.23562 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.011802 B = 0.003220 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2371.861636 B = 8692.843214 C = 9785.943871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.175 3.825 3 N -0.600 5.600 4 C -0.255 4.255 5 H 0.085 0.915 6 C -0.036 4.036 7 N -0.905 5.905 8 Si 0.935 3.065 9 H -0.300 1.300 10 H -0.307 1.307 11 H -0.271 1.271 12 C 0.161 3.839 13 H 0.079 0.921 14 C -0.151 4.151 15 C 0.116 3.884 16 N -0.703 5.703 17 C 0.497 3.503 18 O -0.567 6.567 19 C -0.109 4.109 20 C -0.057 4.057 21 H 0.125 0.875 22 C -0.150 4.150 23 C -0.066 4.066 24 C -0.138 4.138 25 C -0.083 4.083 26 C -0.143 4.143 27 C 0.123 3.877 28 N -0.659 5.659 29 C 0.517 3.483 30 O -0.520 6.520 31 H 0.022 0.978 32 H 0.063 0.937 33 H 0.008 0.992 34 H 0.055 0.945 35 H 0.016 0.984 36 H 0.243 0.757 37 H 0.075 0.925 38 H 0.041 0.959 39 H 0.054 0.946 40 H 0.066 0.934 41 H 0.033 0.967 42 H 0.409 0.591 43 H 0.089 0.911 44 H 0.140 0.860 45 H 0.148 0.852 46 H 0.157 0.843 47 H 0.159 0.841 48 H 0.143 0.857 49 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.703 13.220 5.378 20.491 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.050 3.950 3 N -0.322 5.322 4 C -0.384 4.384 5 H 0.102 0.898 6 C -0.232 4.232 7 N -0.551 5.551 8 Si 0.766 3.234 9 H -0.228 1.228 10 H -0.235 1.235 11 H -0.196 1.196 12 C 0.054 3.946 13 H 0.097 0.903 14 C -0.210 4.210 15 C -0.010 4.010 16 N -0.354 5.354 17 C 0.284 3.716 18 O -0.446 6.446 19 C -0.149 4.149 20 C -0.078 4.078 21 H 0.142 0.858 22 C -0.152 4.152 23 C -0.084 4.084 24 C -0.157 4.157 25 C -0.102 4.102 26 C -0.164 4.164 27 C 0.026 3.974 28 N -0.303 5.303 29 C 0.304 3.696 30 O -0.394 6.394 31 H 0.041 0.959 32 H 0.082 0.918 33 H 0.027 0.973 34 H 0.073 0.927 35 H 0.034 0.966 36 H 0.053 0.947 37 H 0.094 0.906 38 H 0.060 0.940 39 H 0.073 0.927 40 H 0.085 0.915 41 H 0.051 0.949 42 H 0.245 0.755 43 H 0.107 0.893 44 H 0.158 0.842 45 H 0.166 0.834 46 H 0.175 0.825 47 H 0.177 0.823 48 H 0.161 0.839 49 H 0.256 0.744 Dipole moment (debyes) X Y Z Total from point charges -14.403 12.365 6.390 20.030 hybrid contribution 0.251 -1.006 -1.267 1.637 sum -14.153 11.359 5.123 18.857 Atomic orbital electron populations 1.22184 0.99292 0.97317 1.00027 1.20644 0.92149 0.85292 0.96954 1.44342 1.75614 1.10781 1.01461 1.19488 1.39812 0.95167 0.83884 0.89753 1.25196 0.99668 0.99078 0.99256 1.70428 1.31710 1.28063 1.24897 0.85755 0.79309 0.77925 0.80447 1.22847 1.23475 1.19645 1.20740 0.91850 0.96830 0.85219 0.90307 1.22084 0.98471 1.00095 1.00339 1.21802 0.88043 0.96141 0.95003 1.45849 1.10820 1.59902 1.18837 1.20936 0.84210 0.79519 0.86983 1.90723 1.82705 1.50963 1.20244 1.21416 0.90613 1.04793 0.98060 1.20285 0.93944 0.92492 1.01126 0.85776 1.19805 0.94308 0.95760 1.05366 1.20550 0.99197 0.93034 0.95644 1.21468 0.92628 1.01389 1.00207 1.21306 1.00157 0.91578 0.97127 1.20695 0.95397 0.98522 1.01769 1.18567 0.96535 0.84753 0.97524 1.43757 1.16578 1.13448 1.56559 1.20935 0.81215 0.90757 0.76678 1.90860 1.63176 1.42964 1.42406 0.95926 0.91808 0.97324 0.92723 0.96608 0.94730 0.90615 0.93957 0.92728 0.91546 0.94869 0.75525 0.89252 0.84238 0.83398 0.82519 0.82333 0.83921 0.74380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.25 9.27 71.98 0.67 -5.58 16 2 C 0.17 8.37 5.01 86.38 0.43 8.81 16 3 N -0.60 -26.76 1.92 -678.03 -1.30 -28.06 16 4 C -0.25 -12.33 9.38 84.03 0.79 -11.54 16 5 H 0.08 3.90 7.83 -2.91 -0.02 3.87 16 6 C -0.04 -1.85 4.97 84.86 0.42 -1.43 16 7 N -0.90 -49.03 8.40 21.65 0.18 -48.85 16 8 Si 0.93 42.23 29.65 68.60 2.03 44.26 16 9 H -0.30 -13.96 7.11 99.48 0.71 -13.25 16 10 H -0.31 -14.35 7.11 99.48 0.71 -13.65 16 11 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 12 C 0.16 5.86 2.87 44.99 0.13 5.99 16 13 H 0.08 2.72 7.78 -2.39 -0.02 2.70 16 14 C -0.15 -4.84 9.18 71.98 0.66 -4.18 16 15 C 0.12 4.26 4.32 86.38 0.37 4.63 16 16 N -0.70 -25.29 3.99 -463.06 -1.85 -27.14 16 17 C 0.50 17.91 7.27 87.66 0.64 18.55 16 18 O -0.57 -24.54 13.78 18.09 0.25 -24.29 16 19 C -0.11 -2.98 5.22 29.85 0.16 -2.82 16 20 C -0.06 -1.51 2.60 -11.93 -0.03 -1.54 16 21 H 0.12 3.33 7.96 -2.39 -0.02 3.31 16 22 C -0.15 -3.08 5.69 -19.68 -0.11 -3.19 16 23 C -0.07 -0.97 10.02 22.12 0.22 -0.75 16 24 C -0.14 -1.54 10.07 22.32 0.22 -1.32 16 25 C -0.08 -0.92 10.02 22.21 0.22 -0.69 16 26 C -0.14 -2.10 10.07 22.47 0.23 -1.87 16 27 C 0.12 2.53 7.12 38.42 0.27 2.81 16 28 N -0.66 -16.17 5.88 -302.97 -1.78 -17.95 16 29 C 0.52 16.89 7.82 87.94 0.69 17.58 16 30 O -0.52 -22.36 15.74 18.05 0.28 -22.07 16 31 H 0.02 1.06 4.84 -2.39 -0.01 1.05 16 32 H 0.06 3.39 6.30 -2.39 -0.02 3.38 16 33 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.05 2.96 5.84 -2.39 -0.01 2.95 16 35 H 0.02 0.71 6.43 -2.38 -0.02 0.70 16 36 H 0.24 13.18 8.31 -92.71 -0.77 12.41 16 37 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.04 1.43 6.66 -2.39 -0.02 1.42 16 39 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 40 H 0.07 2.24 8.14 -2.38 -0.02 2.22 16 41 H 0.03 1.40 6.92 -2.39 -0.02 1.38 16 42 H 0.41 14.87 7.89 -92.71 -0.73 14.14 16 43 H 0.09 2.62 8.14 -2.39 -0.02 2.60 16 44 H 0.14 2.75 8.14 -2.39 -0.02 2.73 16 45 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 46 H 0.16 0.87 8.06 -2.91 -0.02 0.85 16 47 H 0.16 0.79 8.06 -2.91 -0.02 0.77 16 48 H 0.14 1.49 8.06 -2.91 -0.02 1.47 16 49 H 0.42 8.52 8.96 -92.71 -0.83 7.69 16 Total: -1.00 -70.48 388.38 3.23 -67.25 By element: Atomic # 1 Polarization: 33.98 SS G_CDS: -0.57 Total: 33.41 kcal Atomic # 6 Polarization: 17.46 SS G_CDS: 5.98 Total: 23.44 kcal Atomic # 7 Polarization: -117.25 SS G_CDS: -4.75 Total: -122.00 kcal Atomic # 8 Polarization: -46.90 SS G_CDS: 0.53 Total: -46.36 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.26 kcal Total: -70.48 3.23 -67.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157264701.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.922 kcal (2) G-P(sol) polarization free energy of solvation -70.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.228 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.331 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds