Wall clock time and date at job start Wed Apr 1 2020 05:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46964 * 2 1 4 4 C 1.36940 * 119.99747 * 275.72980 * 3 2 1 5 5 H 1.08000 * 119.99845 * 33.28177 * 4 3 2 6 6 C 1.38811 * 119.99963 * 213.28724 * 4 3 2 7 7 N 1.31623 * 120.00157 * 17.25506 * 6 4 3 8 8 Si 1.86799 * 119.99984 * 197.26227 * 6 4 3 9 9 H 1.48501 * 109.47242 * 89.99699 * 8 6 4 10 10 H 1.48500 * 109.46688 * 209.99802 * 8 6 4 11 11 H 1.48497 * 109.46929 * 329.99616 * 8 6 4 12 12 C 1.46494 * 120.00114 * 95.73507 * 3 2 1 13 13 H 1.08998 * 109.47176 * 180.02562 * 12 3 2 14 14 C 1.53004 * 109.47176 * 60.05280 * 12 3 2 15 15 C 1.52999 * 109.46987 * 300.05250 * 12 3 2 16 16 N 1.46497 * 109.47120 * 305.00087 * 15 12 3 17 17 C 1.34774 * 119.99920 * 179.72786 * 16 15 12 18 18 O 1.21283 * 120.00163 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00290 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.47658 * 179.97438 * 19 17 16 21 21 H 1.09000 * 110.45483 * 305.70093 * 20 19 17 22 22 C 1.51131 * 110.51384 * 183.09542 * 20 19 17 23 23 C 1.37678 * 132.84427 * 61.33202 * 22 20 19 24 24 C 1.38401 * 119.91381 * 180.02562 * 23 22 20 25 25 C 1.38307 * 119.82208 * 0.02562 * 24 23 22 26 26 C 1.37935 * 120.37737 * 359.96299 * 25 24 23 27 27 C 1.38904 * 106.34692 * 241.35596 * 22 20 19 28 28 N 1.39530 * 110.22482 * 359.97438 * 27 22 20 29 29 C 1.34680 * 112.28783 * 359.91992 * 28 27 22 30 30 O 1.21293 * 126.60208 * 180.02562 * 29 28 27 31 31 H 1.08995 * 109.47400 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47183 * 300.00519 * 1 2 3 33 33 H 1.09005 * 109.46769 * 60.00438 * 1 2 3 34 34 H 1.09000 * 109.47183 * 239.99481 * 2 1 3 35 35 H 1.09003 * 109.46553 * 120.00058 * 2 1 3 36 36 H 0.96994 * 120.00705 * 180.02562 * 7 6 4 37 37 H 1.08996 * 109.47376 * 59.99872 * 14 12 3 38 38 H 1.08999 * 109.47034 * 180.02562 * 14 12 3 39 39 H 1.09002 * 109.47309 * 300.00062 * 14 12 3 40 40 H 1.09003 * 109.47039 * 184.99960 * 15 12 3 41 41 H 1.08999 * 109.46956 * 65.00494 * 15 12 3 42 42 H 0.96993 * 119.99935 * 359.97438 * 16 15 12 43 43 H 1.09007 * 109.47036 * 300.00106 * 19 17 16 44 44 H 1.08998 * 109.46980 * 59.99380 * 19 17 16 45 45 H 1.07996 * 120.04796 * 0.03009 * 23 22 20 46 46 H 1.07991 * 120.08779 * 180.02562 * 24 23 22 47 47 H 1.08000 * 119.80742 * 179.97438 * 25 24 23 48 48 H 1.08001 * 119.93719 * 180.02562 * 26 25 24 49 49 H 0.97000 * 123.87408 * 180.02562 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4369 1.8811 -1.9831 6 6 3.1503 2.9984 -1.3441 7 7 4.1873 2.9915 -0.5335 8 14 3.0449 4.2627 -2.7151 9 1 2.3494 5.4765 -2.2168 10 1 4.4144 4.6247 -3.1608 11 1 2.2872 3.6920 -3.8576 12 6 2.3820 2.0296 1.2623 13 1 2.7200 3.0467 1.0642 14 6 3.5072 1.2408 1.9352 15 6 1.1628 2.0675 2.1859 16 7 0.0469 2.7185 1.4951 17 6 -1.1401 2.8603 2.1173 18 8 -1.2847 2.4486 3.2489 19 6 -2.2883 3.5294 1.4066 20 6 -3.5096 3.5608 2.3275 21 1 -3.7440 2.5576 2.6837 22 6 -4.6980 4.1593 1.6108 23 6 -5.3985 3.7857 0.4860 24 6 -6.4698 4.5486 0.0550 25 6 -6.8319 5.6843 0.7564 26 6 -6.1318 6.0606 1.8838 27 6 -5.0521 5.2974 2.3241 28 7 -4.2005 5.4665 3.4164 29 6 -3.2710 4.4951 3.4946 30 8 -2.4053 4.3886 4.3374 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 4.8967 3.6430 -0.6478 37 1 4.3758 1.2138 1.2772 38 1 3.7775 1.7230 2.8746 39 1 3.1697 0.2235 2.1333 40 1 1.4079 2.6276 3.0883 41 1 0.8795 1.0501 2.4555 42 1 0.1614 3.0442 0.5887 43 1 -2.0068 4.5484 1.1408 44 1 -2.5301 2.9717 0.5018 45 1 -5.1126 2.8984 -0.0592 46 1 -7.0215 4.2579 -0.8267 47 1 -7.6676 6.2796 0.4196 48 1 -6.4210 6.9486 2.4263 49 1 -4.2706 6.1991 4.0483 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001157264703.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:36 Heat of formation + Delta-G solvation = -15.626860 kcal Electronic energy + Delta-G solvation = -31074.336417 eV Core-core repulsion = 27002.123484 eV Total energy + Delta-G solvation = -4072.212933 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.73451 -39.13505 -38.37382 -36.85456 -35.72768 -33.65831 -33.45449 -31.86539 -31.11316 -30.34655 -29.25373 -28.15681 -26.67758 -24.65585 -23.91691 -22.81940 -21.71552 -21.62041 -20.96400 -19.58233 -19.15690 -18.03457 -17.24215 -16.83044 -16.54430 -16.08044 -15.72516 -15.37680 -15.02030 -14.65403 -14.55662 -14.33268 -14.15356 -13.70960 -13.61257 -13.27751 -13.15459 -12.82748 -12.67743 -12.46966 -12.32385 -12.14378 -12.02050 -11.79278 -11.68067 -11.41474 -11.12459 -11.05458 -10.98378 -10.93456 -10.81504 -10.62876 -10.28699 -10.06236 -9.96644 -9.60824 -9.40536 -9.33863 -9.08054 -8.50334 -8.25413 -8.23217 -6.65579 -5.87265 -3.36163 0.94469 1.04477 2.44804 2.84456 3.20576 3.30675 3.39201 3.40217 3.51152 3.76776 3.99126 4.31272 4.42208 4.58390 4.71602 4.83438 5.02077 5.08532 5.14968 5.27611 5.34155 5.42055 5.46882 5.58130 5.66673 5.77872 5.85980 5.97132 6.07982 6.11756 6.21943 6.24772 6.30254 6.41281 6.42513 6.54407 6.58027 6.64944 6.67571 6.71664 6.80481 6.86540 6.93187 7.17943 7.18597 7.52220 7.60964 7.77671 7.97360 8.25620 8.44338 8.87175 9.17167 9.78823 10.36199 11.19181 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.003124 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.273624 B = 8961.545205 C = 9795.543580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.141 3.859 3 N -0.582 5.582 4 C -0.263 4.263 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.890 5.890 8 Si 0.896 3.104 9 H -0.287 1.287 10 H -0.292 1.292 11 H -0.279 1.279 12 C 0.177 3.823 13 H 0.099 0.901 14 C -0.144 4.144 15 C 0.105 3.895 16 N -0.703 5.703 17 C 0.497 3.503 18 O -0.534 6.534 19 C -0.119 4.119 20 C -0.063 4.063 21 H 0.129 0.871 22 C -0.139 4.139 23 C -0.061 4.061 24 C -0.144 4.144 25 C -0.085 4.085 26 C -0.145 4.145 27 C 0.151 3.849 28 N -0.670 5.670 29 C 0.528 3.472 30 O -0.459 6.459 31 H 0.032 0.968 32 H 0.053 0.947 33 H 0.046 0.954 34 H 0.040 0.960 35 H 0.036 0.964 36 H 0.254 0.746 37 H 0.077 0.923 38 H 0.032 0.968 39 H 0.029 0.971 40 H 0.051 0.949 41 H 0.052 0.948 42 H 0.409 0.591 43 H 0.093 0.907 44 H 0.106 0.894 45 H 0.130 0.870 46 H 0.129 0.871 47 H 0.128 0.872 48 H 0.124 0.876 49 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.096 4.311 2.072 20.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.392 4.392 5 H 0.082 0.918 6 C -0.188 4.188 7 N -0.533 5.533 8 Si 0.726 3.274 9 H -0.214 1.214 10 H -0.218 1.218 11 H -0.204 1.204 12 C 0.069 3.931 13 H 0.116 0.884 14 C -0.204 4.204 15 C -0.021 4.021 16 N -0.354 5.354 17 C 0.282 3.718 18 O -0.411 6.411 19 C -0.160 4.160 20 C -0.084 4.084 21 H 0.147 0.853 22 C -0.142 4.142 23 C -0.079 4.079 24 C -0.164 4.164 25 C -0.104 4.104 26 C -0.167 4.167 27 C 0.053 3.947 28 N -0.315 5.315 29 C 0.314 3.686 30 O -0.328 6.328 31 H 0.051 0.949 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.054 0.946 36 H 0.064 0.936 37 H 0.096 0.904 38 H 0.051 0.949 39 H 0.048 0.952 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.245 0.755 43 H 0.111 0.889 44 H 0.125 0.875 45 H 0.148 0.852 46 H 0.147 0.853 47 H 0.146 0.854 48 H 0.142 0.858 49 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -19.386 3.928 3.361 20.063 hybrid contribution -0.020 1.310 -0.881 1.579 sum -19.406 5.239 2.479 20.253 Atomic orbital electron populations 1.22452 1.00087 0.98938 1.01513 1.20744 0.91698 0.87463 0.98658 1.43880 1.75975 1.08253 1.02272 1.19093 1.08528 1.18225 0.93396 0.91848 1.25155 0.94536 1.01354 0.97803 1.70006 1.07859 1.35843 1.39570 0.86401 0.76944 0.81954 0.82092 1.21427 1.21811 1.20406 1.20489 0.88993 0.99417 0.84177 0.88350 1.22022 1.01146 0.97967 0.99232 1.22106 0.88101 0.96167 0.95696 1.45904 1.10871 1.59584 1.19046 1.20307 0.84107 0.80554 0.86847 1.90743 1.83079 1.49439 1.17833 1.21444 0.92198 1.03282 0.99031 1.20405 0.93051 1.01313 0.93663 0.85296 1.19845 0.99123 0.97144 0.98054 1.20345 0.94072 0.99463 0.94038 1.21066 0.98215 0.96050 1.01029 1.20870 0.98870 0.96594 0.94045 1.20352 0.96058 1.00990 0.99261 1.18187 0.92329 0.95669 0.88488 1.43979 1.31133 1.28814 1.27566 1.20591 0.80118 0.81416 0.86434 1.90903 1.31329 1.72503 1.38085 0.94941 0.92839 0.93506 0.94207 0.94555 0.93565 0.90357 0.94870 0.95181 0.93117 0.92978 0.75474 0.88875 0.87533 0.85172 0.85348 0.85373 0.85786 0.75254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.00 9.87 37.16 0.37 -2.63 16 2 C 0.14 2.83 5.67 -4.04 -0.02 2.81 16 3 N -0.58 -13.03 1.85 -165.66 -0.31 -13.34 16 4 C -0.26 -6.46 9.26 -15.06 -0.14 -6.60 16 5 H 0.06 1.56 7.89 -52.49 -0.41 1.15 16 6 C 0.01 0.30 4.85 -17.43 -0.08 0.21 16 7 N -0.89 -23.70 10.61 55.49 0.59 -23.12 16 8 Si 0.90 20.21 29.59 -169.99 -5.03 15.18 16 9 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 12 C 0.18 3.84 1.92 -67.93 -0.13 3.70 16 13 H 0.10 2.44 6.03 -51.93 -0.31 2.12 16 14 C -0.14 -3.02 9.05 37.16 0.34 -2.68 16 15 C 0.10 2.08 4.34 -4.04 -0.02 2.06 16 16 N -0.70 -12.86 3.99 -60.30 -0.24 -13.10 16 17 C 0.50 8.73 7.27 -10.99 -0.08 8.65 16 18 O -0.53 -11.15 13.78 -16.52 -0.23 -11.38 16 19 C -0.12 -1.57 5.22 -27.89 -0.15 -1.72 16 20 C -0.06 -0.80 2.60 -92.37 -0.24 -1.04 16 21 H 0.13 1.69 7.96 -51.93 -0.41 1.27 16 22 C -0.14 -1.44 5.67 -104.37 -0.59 -2.03 16 23 C -0.06 -0.52 10.04 -39.73 -0.40 -0.92 16 24 C -0.14 -1.04 10.07 -39.50 -0.40 -1.44 16 25 C -0.09 -0.59 10.01 -39.67 -0.40 -0.98 16 26 C -0.15 -1.14 10.07 -39.27 -0.40 -1.54 16 27 C 0.15 1.51 7.11 -83.69 -0.60 0.92 16 28 N -0.67 -7.33 5.89 -9.63 -0.06 -7.38 16 29 C 0.53 7.73 7.85 -10.69 -0.08 7.65 16 30 O -0.46 -8.75 15.75 -16.52 -0.26 -9.01 16 31 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.97 4.98 -51.93 -0.26 0.71 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.04 0.83 8.09 -51.93 -0.42 0.41 16 35 H 0.04 0.71 6.44 -51.93 -0.33 0.38 16 36 H 0.25 6.68 8.31 -40.82 -0.34 6.34 16 37 H 0.08 1.85 7.40 -51.93 -0.38 1.46 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.03 0.58 6.67 -51.93 -0.35 0.24 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 1.06 7.05 -51.93 -0.37 0.69 16 42 H 0.41 7.56 7.89 -40.82 -0.32 7.24 16 43 H 0.09 1.18 8.14 -51.92 -0.42 0.76 16 44 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 45 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 46 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 47 H 0.13 0.57 8.06 -52.49 -0.42 0.15 16 48 H 0.12 0.72 8.06 -52.49 -0.42 0.29 16 49 H 0.41 3.54 8.96 -40.82 -0.37 3.18 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -30.99 392.42 -9.94 -40.93 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -7.30 Total: 10.88 kcal Atomic # 6 Polarization: 7.44 SS G_CDS: -3.02 Total: 4.42 kcal Atomic # 7 Polarization: -56.92 SS G_CDS: -0.02 Total: -56.94 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.49 Total: -20.39 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.03 Total: 15.18 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -30.99 -9.94 -40.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157264703.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.306 kcal (2) G-P(sol) polarization free energy of solvation -30.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.933 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds