Wall clock time and date at job start Wed Apr 1 2020 05:04:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46501 * 109.46964 * 2 1 4 4 C 1.36940 * 119.99747 * 275.72980 * 3 2 1 5 5 H 1.08000 * 119.99845 * 33.28177 * 4 3 2 6 6 C 1.38811 * 119.99963 * 213.28724 * 4 3 2 7 7 N 1.31623 * 120.00157 * 17.25506 * 6 4 3 8 8 Si 1.86799 * 119.99984 * 197.26227 * 6 4 3 9 9 H 1.48501 * 109.47242 * 89.99699 * 8 6 4 10 10 H 1.48500 * 109.46688 * 209.99802 * 8 6 4 11 11 H 1.48497 * 109.46929 * 329.99616 * 8 6 4 12 12 C 1.46494 * 120.00114 * 95.73507 * 3 2 1 13 13 H 1.08998 * 109.47176 * 180.02562 * 12 3 2 14 14 C 1.53004 * 109.47176 * 60.05280 * 12 3 2 15 15 C 1.52999 * 109.46987 * 300.05250 * 12 3 2 16 16 N 1.46497 * 109.47120 * 305.00087 * 15 12 3 17 17 C 1.34774 * 119.99920 * 179.72786 * 16 15 12 18 18 O 1.21283 * 120.00163 * 359.97438 * 17 16 15 19 19 C 1.50699 * 120.00290 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.47658 * 179.97438 * 19 17 16 21 21 H 1.09000 * 110.45483 * 305.70093 * 20 19 17 22 22 C 1.51131 * 110.51384 * 183.09542 * 20 19 17 23 23 C 1.37678 * 132.84427 * 61.33202 * 22 20 19 24 24 C 1.38401 * 119.91381 * 180.02562 * 23 22 20 25 25 C 1.38307 * 119.82208 * 0.02562 * 24 23 22 26 26 C 1.37935 * 120.37737 * 359.96299 * 25 24 23 27 27 C 1.38904 * 106.34692 * 241.35596 * 22 20 19 28 28 N 1.39530 * 110.22482 * 359.97438 * 27 22 20 29 29 C 1.34680 * 112.28783 * 359.91992 * 28 27 22 30 30 O 1.21293 * 126.60208 * 180.02562 * 29 28 27 31 31 H 1.08995 * 109.47400 * 179.97438 * 1 2 3 32 32 H 1.09000 * 109.47183 * 300.00519 * 1 2 3 33 33 H 1.09005 * 109.46769 * 60.00438 * 1 2 3 34 34 H 1.09000 * 109.47183 * 239.99481 * 2 1 3 35 35 H 1.09003 * 109.46553 * 120.00058 * 2 1 3 36 36 H 0.96994 * 120.00705 * 180.02562 * 7 6 4 37 37 H 1.08996 * 109.47376 * 59.99872 * 14 12 3 38 38 H 1.08999 * 109.47034 * 180.02562 * 14 12 3 39 39 H 1.09002 * 109.47309 * 300.00062 * 14 12 3 40 40 H 1.09003 * 109.47039 * 184.99960 * 15 12 3 41 41 H 1.08999 * 109.46956 * 65.00494 * 15 12 3 42 42 H 0.96993 * 119.99935 * 359.97438 * 16 15 12 43 43 H 1.09007 * 109.47036 * 300.00106 * 19 17 16 44 44 H 1.08998 * 109.46980 * 59.99380 * 19 17 16 45 45 H 1.07996 * 120.04796 * 0.03009 * 23 22 20 46 46 H 1.07991 * 120.08779 * 180.02562 * 24 23 22 47 47 H 1.08000 * 119.80742 * 179.97438 * 25 24 23 48 48 H 1.08001 * 119.93719 * 180.02562 * 26 25 24 49 49 H 0.97000 * 123.87408 * 180.02562 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1349 2.0662 -1.1800 5 1 1.4369 1.8811 -1.9831 6 6 3.1503 2.9984 -1.3441 7 7 4.1873 2.9915 -0.5335 8 14 3.0449 4.2627 -2.7151 9 1 2.3494 5.4765 -2.2168 10 1 4.4144 4.6247 -3.1608 11 1 2.2872 3.6920 -3.8576 12 6 2.3820 2.0296 1.2623 13 1 2.7200 3.0467 1.0642 14 6 3.5072 1.2408 1.9352 15 6 1.1628 2.0675 2.1859 16 7 0.0469 2.7185 1.4951 17 6 -1.1401 2.8603 2.1173 18 8 -1.2847 2.4486 3.2489 19 6 -2.2883 3.5294 1.4066 20 6 -3.5096 3.5608 2.3275 21 1 -3.7440 2.5576 2.6837 22 6 -4.6980 4.1593 1.6108 23 6 -5.3985 3.7857 0.4860 24 6 -6.4698 4.5486 0.0550 25 6 -6.8319 5.6843 0.7564 26 6 -6.1318 6.0606 1.8838 27 6 -5.0521 5.2974 2.3241 28 7 -4.2005 5.4665 3.4164 29 6 -3.2710 4.4951 3.4946 30 8 -2.4053 4.3886 4.3374 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 -0.3633 0.5138 -0.8901 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5139 0.8900 36 1 4.8967 3.6430 -0.6478 37 1 4.3758 1.2138 1.2772 38 1 3.7775 1.7230 2.8746 39 1 3.1697 0.2235 2.1333 40 1 1.4079 2.6276 3.0883 41 1 0.8795 1.0501 2.4555 42 1 0.1614 3.0442 0.5887 43 1 -2.0068 4.5484 1.1408 44 1 -2.5301 2.9717 0.5018 45 1 -5.1126 2.8984 -0.0592 46 1 -7.0215 4.2579 -0.8267 47 1 -7.6676 6.2796 0.4196 48 1 -6.4210 6.9486 2.4263 49 1 -4.2706 6.1991 4.0483 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001157264703.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:35 Heat of formation + Delta-G solvation = -32.886642 kcal Electronic energy + Delta-G solvation = -31075.084857 eV Core-core repulsion = 27002.123484 eV Total energy + Delta-G solvation = -4072.961373 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.63030 -40.52768 -39.34770 -38.53393 -36.62112 -35.15808 -34.53718 -33.68079 -32.69378 -31.14088 -30.07164 -29.85570 -27.87301 -26.04729 -25.73091 -23.50886 -23.32031 -22.37147 -22.07058 -21.05406 -20.75566 -18.83524 -18.76535 -18.13123 -17.72987 -17.18965 -16.84563 -16.67791 -16.44104 -16.22578 -15.86059 -15.34953 -15.27984 -14.91468 -14.72973 -14.59999 -14.29086 -14.03206 -13.92747 -13.83966 -13.72611 -13.48284 -13.37739 -13.11750 -12.97331 -12.76937 -12.71334 -12.56789 -12.51984 -12.34704 -12.02733 -11.84435 -11.81218 -11.77129 -11.32831 -11.15318 -11.10778 -10.70225 -10.40885 -9.80987 -9.77270 -8.98059 -8.50714 -7.79356 -5.29848 0.22363 0.43610 1.45108 1.51398 1.55122 1.61294 1.81814 2.00218 2.40885 2.56887 2.89843 3.10229 3.35061 3.36660 3.67466 3.76376 3.94730 4.05610 4.20519 4.25411 4.31598 4.47474 4.49758 4.51065 4.59561 4.62150 4.68287 4.72544 4.82332 4.83818 4.91966 4.95224 5.01008 5.08905 5.09536 5.19880 5.24738 5.36887 5.51913 5.57655 5.63021 5.66264 5.68680 5.71628 5.79498 5.84013 5.88648 6.12239 6.52351 6.79557 6.98808 7.26233 7.44841 7.95176 8.48192 9.24680 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.012085 B = 0.003124 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2316.273624 B = 8961.545205 C = 9795.543580 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.138 3.862 3 N -0.590 5.590 4 C -0.259 4.259 5 H 0.066 0.934 6 C -0.034 4.034 7 N -0.918 5.918 8 Si 0.953 3.047 9 H -0.286 1.286 10 H -0.305 1.305 11 H -0.269 1.269 12 C 0.185 3.815 13 H 0.068 0.932 14 C -0.136 4.136 15 C 0.120 3.880 16 N -0.702 5.702 17 C 0.495 3.505 18 O -0.568 6.568 19 C -0.109 4.109 20 C -0.059 4.059 21 H 0.120 0.880 22 C -0.149 4.149 23 C -0.067 4.067 24 C -0.139 4.139 25 C -0.083 4.083 26 C -0.141 4.141 27 C 0.126 3.874 28 N -0.659 5.659 29 C 0.519 3.481 30 O -0.519 6.519 31 H 0.054 0.946 32 H 0.046 0.954 33 H 0.046 0.954 34 H 0.031 0.969 35 H 0.039 0.961 36 H 0.247 0.753 37 H 0.049 0.951 38 H 0.045 0.955 39 H 0.042 0.958 40 H 0.040 0.960 41 H 0.050 0.950 42 H 0.409 0.591 43 H 0.100 0.900 44 H 0.135 0.865 45 H 0.145 0.855 46 H 0.155 0.845 47 H 0.159 0.841 48 H 0.145 0.855 49 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.435 4.801 0.171 23.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.013 3.987 3 N -0.312 5.312 4 C -0.389 4.389 5 H 0.084 0.916 6 C -0.231 4.231 7 N -0.562 5.562 8 Si 0.783 3.217 9 H -0.213 1.213 10 H -0.232 1.232 11 H -0.194 1.194 12 C 0.077 3.923 13 H 0.086 0.914 14 C -0.195 4.195 15 C -0.006 4.006 16 N -0.353 5.353 17 C 0.282 3.718 18 O -0.447 6.447 19 C -0.149 4.149 20 C -0.081 4.081 21 H 0.138 0.862 22 C -0.152 4.152 23 C -0.086 4.086 24 C -0.157 4.157 25 C -0.101 4.101 26 C -0.162 4.162 27 C 0.029 3.971 28 N -0.303 5.303 29 C 0.307 3.693 30 O -0.392 6.392 31 H 0.073 0.927 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.050 0.950 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.068 0.932 42 H 0.246 0.754 43 H 0.118 0.882 44 H 0.153 0.847 45 H 0.163 0.837 46 H 0.173 0.827 47 H 0.176 0.824 48 H 0.162 0.838 49 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -22.804 4.428 1.419 23.273 hybrid contribution 0.895 1.141 -0.329 1.487 sum -21.909 5.568 1.090 22.632 Atomic orbital electron populations 1.22251 0.97735 1.00319 1.01132 1.20844 0.93389 0.86090 0.98408 1.43990 1.76123 1.09190 1.01890 1.19299 1.07852 1.17879 0.93892 0.91646 1.25745 0.94496 1.03102 0.99776 1.70150 1.08464 1.36362 1.41208 0.85495 0.76036 0.80023 0.80181 1.21291 1.23205 1.19408 1.20292 0.89790 0.97780 0.84430 0.91429 1.21894 0.99786 0.98798 0.99036 1.21776 0.87984 0.96021 0.94861 1.45877 1.10892 1.59642 1.18924 1.21021 0.84550 0.79778 0.86462 1.90732 1.83639 1.50840 1.19475 1.21434 0.90506 1.03414 0.99532 1.20293 0.93929 1.00622 0.93239 0.86206 1.19760 0.98820 0.97470 0.99169 1.20604 0.94273 1.00248 0.93441 1.21457 0.97339 0.95480 1.01455 1.21301 0.99120 0.96565 0.93140 1.20687 0.94885 1.01138 0.99492 1.18436 0.93457 0.96669 0.88500 1.43798 1.30375 1.28126 1.28002 1.20931 0.79840 0.82272 0.86272 1.90861 1.33899 1.74192 1.40284 0.92686 0.93457 0.93510 0.95022 0.94233 0.94390 0.93201 0.93627 0.93914 0.94138 0.93185 0.75432 0.88153 0.84682 0.83750 0.82738 0.82358 0.83753 0.74258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 9.87 71.98 0.71 -4.45 16 2 C 0.14 5.43 5.67 86.38 0.49 5.92 16 3 N -0.59 -26.34 1.85 -678.03 -1.25 -27.59 16 4 C -0.26 -12.65 9.26 84.03 0.78 -11.87 16 5 H 0.07 3.14 7.89 -2.91 -0.02 3.12 16 6 C -0.03 -1.73 4.85 84.86 0.41 -1.31 16 7 N -0.92 -49.94 10.61 21.65 0.23 -49.71 16 8 Si 0.95 41.63 29.59 68.60 2.03 43.66 16 9 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 10 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 11 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 12 C 0.18 8.14 1.92 44.99 0.09 8.22 16 13 H 0.07 3.45 6.03 -2.39 -0.01 3.43 16 14 C -0.14 -5.77 9.05 71.98 0.65 -5.12 16 15 C 0.12 4.82 4.34 86.38 0.37 5.19 16 16 N -0.70 -25.73 3.99 -463.07 -1.85 -27.58 16 17 C 0.50 17.45 7.27 87.66 0.64 18.08 16 18 O -0.57 -24.32 13.78 18.06 0.25 -24.07 16 19 C -0.11 -2.77 5.22 29.85 0.16 -2.62 16 20 C -0.06 -1.48 2.60 -11.93 -0.03 -1.51 16 21 H 0.12 3.18 7.96 -2.39 -0.02 3.16 16 22 C -0.15 -2.84 5.67 -19.70 -0.11 -2.95 16 23 C -0.07 -0.94 10.04 22.18 0.22 -0.71 16 24 C -0.14 -1.41 10.07 22.33 0.22 -1.18 16 25 C -0.08 -0.78 10.01 22.21 0.22 -0.56 16 26 C -0.14 -1.76 10.07 22.47 0.23 -1.54 16 27 C 0.13 2.30 7.11 38.35 0.27 2.57 16 28 N -0.66 -14.21 5.89 -302.82 -1.78 -15.99 16 29 C 0.52 15.59 7.85 87.89 0.69 16.28 16 30 O -0.52 -20.80 15.75 18.03 0.28 -20.51 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.64 4.98 -2.39 -0.01 1.63 16 33 H 0.05 1.55 8.14 -2.38 -0.02 1.53 16 34 H 0.03 1.28 8.09 -2.39 -0.02 1.27 16 35 H 0.04 1.52 6.44 -2.39 -0.02 1.50 16 36 H 0.25 13.34 8.31 -92.71 -0.77 12.57 16 37 H 0.05 2.40 7.40 -2.39 -0.02 2.38 16 38 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 39 H 0.04 1.66 6.67 -2.39 -0.02 1.65 16 40 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.05 2.03 7.05 -2.39 -0.02 2.02 16 42 H 0.41 14.98 7.89 -92.71 -0.73 14.25 16 43 H 0.10 2.44 8.14 -2.38 -0.02 2.42 16 44 H 0.14 2.63 8.14 -2.39 -0.02 2.62 16 45 H 0.14 1.53 8.06 -2.91 -0.02 1.51 16 46 H 0.15 0.78 8.06 -2.92 -0.02 0.75 16 47 H 0.16 0.56 8.06 -2.91 -0.02 0.53 16 48 H 0.14 1.16 8.06 -2.91 -0.02 1.14 16 49 H 0.42 7.17 8.96 -92.71 -0.83 6.34 16 Total: -1.00 -69.23 392.42 3.34 -65.89 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: -0.58 Total: 33.46 kcal Atomic # 6 Polarization: 16.43 SS G_CDS: 6.01 Total: 22.44 kcal Atomic # 7 Polarization: -116.22 SS G_CDS: -4.66 Total: -120.87 kcal Atomic # 8 Polarization: -45.12 SS G_CDS: 0.53 Total: -44.58 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.66 kcal Total: -69.23 3.34 -65.89 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001157264703.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.003 kcal (2) G-P(sol) polarization free energy of solvation -69.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.890 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds