Wall clock time and date at job start Wed Apr 1 2020 05:33:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.46841 * 2 1 4 4 C 1.35502 * 116.99650 * 180.02562 * 3 2 1 5 5 C 1.39166 * 119.52482 * 180.02562 * 4 3 2 6 6 C 1.37954 * 119.26730 * 179.97438 * 5 4 3 7 7 C 1.40281 * 118.35354 * 0.02562 * 6 5 4 8 8 C 1.47616 * 120.49962 * 180.02562 * 7 6 5 9 9 O 1.21589 * 119.99891 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00398 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00172 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47066 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.46992 * 179.97438 * 12 11 10 14 14 C 1.29454 * 117.69309 * 95.00370 * 13 12 11 15 15 C 1.50319 * 123.65308 * 180.57644 * 14 13 12 16 16 N 1.47013 * 109.16670 * 349.27852 * 15 14 13 17 17 C 1.36927 * 121.37514 * 222.96985 * 16 15 14 18 18 H 1.08007 * 119.99875 * 155.97934 * 17 16 15 19 19 C 1.38816 * 120.00301 * 335.97289 * 17 16 15 20 20 N 1.31613 * 120.00223 * 344.50115 * 19 17 16 21 21 Si 1.86807 * 120.00023 * 164.49546 * 19 17 16 22 22 H 1.48497 * 109.46704 * 94.45760 * 21 19 17 23 23 H 1.48496 * 109.46994 * 214.45860 * 21 19 17 24 24 H 1.48496 * 109.47070 * 334.45894 * 21 19 17 25 25 C 1.47338 * 117.24593 * 42.94916 * 16 15 14 26 26 C 1.49963 * 117.69536 * 275.22014 * 13 12 11 27 27 C 1.39529 * 119.00743 * 0.26622 * 7 6 5 28 28 N 1.31672 * 120.61949 * 359.43267 * 27 7 6 29 29 H 1.08999 * 109.46887 * 300.00134 * 1 2 3 30 30 H 1.08997 * 109.47193 * 59.99555 * 1 2 3 31 31 H 1.09003 * 109.47218 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46775 * 240.00749 * 2 1 3 33 33 H 1.08993 * 109.47371 * 119.99969 * 2 1 3 34 34 H 1.08008 * 120.36601 * 359.95931 * 5 4 3 35 35 H 1.07999 * 120.82442 * 179.97438 * 6 5 4 36 36 H 0.97005 * 119.99819 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.47229 * 60.00052 * 11 10 8 38 38 H 1.09004 * 109.47257 * 299.99911 * 11 10 8 39 39 H 1.09002 * 109.47107 * 60.00437 * 12 11 10 40 40 H 1.08996 * 109.47396 * 300.00066 * 12 11 10 41 41 H 1.07998 * 118.17606 * 0.85593 * 14 13 12 42 42 H 1.09003 * 109.52678 * 109.18260 * 15 14 13 43 43 H 1.08996 * 109.52663 * 229.37273 * 15 14 13 44 44 H 0.97000 * 120.00990 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.78220 * 57.81154 * 25 16 15 46 46 H 1.08996 * 109.77666 * 178.61809 * 25 16 15 47 47 H 1.09002 * 109.43565 * 40.82068 * 26 13 12 48 48 H 1.08996 * 109.13473 * 281.43391 * 26 13 12 49 49 H 1.07993 * 119.69106 * 179.73035 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3496 1.5249 -0.0005 5 6 3.8709 2.8152 0.0000 6 6 5.2393 2.9898 0.0000 7 6 6.0564 1.8495 -0.0011 8 6 7.5267 1.9814 -0.0006 9 8 8.0381 3.0845 0.0003 10 7 8.3022 0.8791 -0.0012 11 6 9.7613 1.0100 -0.0012 12 6 10.3982 -0.3812 -0.0012 13 6 11.8991 -0.2465 -0.0019 14 6 12.5078 -0.2921 1.1397 15 6 13.9970 -0.1595 1.2956 16 7 14.6296 -0.2351 -0.0293 17 6 15.7682 -0.9674 -0.2349 18 1 16.0031 -1.3345 -1.2231 19 6 16.6206 -1.2381 0.8268 20 7 16.5137 -0.5556 1.9471 21 14 17.9193 -2.5711 0.6655 22 1 19.2036 -1.9614 0.2365 23 1 18.1040 -3.2434 1.9766 24 1 17.4827 -3.5679 -0.3448 25 6 13.9876 0.5093 -1.1268 26 6 12.5819 -0.0641 -1.3246 27 6 5.4586 0.5888 -0.0078 28 7 4.1475 0.4682 -0.0018 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.2113 3.6705 0.0001 35 1 5.6709 3.9798 -0.0001 36 1 7.8942 -0.0010 -0.0015 37 1 10.0774 1.5539 0.8889 38 1 10.0772 1.5546 -0.8910 39 1 10.0822 -0.9254 -0.8912 40 1 10.0823 -0.9254 0.8887 41 1 11.9130 -0.4378 2.0292 42 1 14.2310 0.8001 1.7567 43 1 14.3708 -0.9675 1.9243 44 1 17.1090 -0.7449 2.6891 45 1 13.9218 1.5658 -0.8670 46 1 14.5671 0.3894 -2.0422 47 1 11.9982 0.6176 -1.9432 48 1 12.6535 -1.0294 -1.8258 49 1 6.0771 -0.2964 -0.0131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160285112.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:38 Heat of formation + Delta-G solvation = -4.788422 kcal Electronic energy + Delta-G solvation = -28489.129259 eV Core-core repulsion = 24417.386316 eV Total energy + Delta-G solvation = -4071.742943 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.28191 -39.80521 -38.28982 -37.82694 -35.52396 -33.68509 -33.00380 -32.62001 -31.52397 -30.65007 -29.78702 -28.55276 -25.63184 -24.76672 -24.46922 -23.11616 -22.70234 -22.33831 -21.11921 -20.77528 -19.10451 -18.05984 -17.60165 -17.47188 -16.82655 -16.12199 -15.71569 -15.51007 -15.27795 -15.00462 -14.60221 -14.50775 -14.45086 -14.03744 -13.94266 -13.67642 -13.53021 -13.33400 -13.22563 -12.95747 -12.81057 -12.60762 -12.21100 -12.08419 -11.99962 -11.58723 -11.42137 -11.26422 -11.01694 -10.90976 -10.71492 -10.54603 -10.45529 -10.30698 -10.23375 -9.95500 -9.80029 -9.54045 -9.28785 -8.97781 -8.64408 -7.91784 -6.70985 -5.77427 -3.15925 0.28437 0.71173 2.45654 2.57463 2.76858 3.08996 3.38546 3.42646 3.45488 3.47809 3.65726 4.28870 4.38083 4.47947 4.50015 4.50949 4.56162 4.67489 4.87505 5.07802 5.09402 5.10209 5.19152 5.26674 5.31428 5.33748 5.41168 5.53459 5.56010 5.63874 5.64232 5.79169 5.84461 6.00002 6.03520 6.14670 6.21526 6.28902 6.40974 6.56770 6.68051 6.80245 6.91986 7.21532 7.24243 7.26390 7.34603 7.42152 7.76459 7.89299 7.98218 8.40603 9.22116 9.85134 10.43834 11.32987 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028270 B = 0.001533 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.218755 B =18256.858630 C =18721.277380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.064 3.936 3 O -0.303 6.303 4 C 0.343 3.657 5 C -0.197 4.197 6 C 0.018 3.982 7 C -0.224 4.224 8 C 0.565 3.435 9 O -0.535 6.535 10 N -0.725 5.725 11 C 0.124 3.876 12 C -0.092 4.092 13 C -0.143 4.143 14 C -0.146 4.146 15 C 0.196 3.804 16 N -0.595 5.595 17 C -0.245 4.245 18 H 0.068 0.932 19 C -0.002 4.002 20 N -0.909 5.909 21 Si 0.903 3.097 22 H -0.288 1.288 23 H -0.290 1.290 24 H -0.280 1.280 25 C 0.143 3.857 26 C -0.091 4.091 27 C 0.179 3.821 28 N -0.544 5.544 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.150 0.850 35 H 0.156 0.844 36 H 0.397 0.603 37 H 0.072 0.928 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.091 0.909 42 H 0.038 0.962 43 H 0.091 0.909 44 H 0.253 0.747 45 H 0.024 0.976 46 H 0.056 0.944 47 H 0.053 0.947 48 H 0.062 0.938 49 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.056 1.801 -3.665 31.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.011 4.011 3 O -0.210 6.210 4 C 0.165 3.835 5 C -0.217 4.217 6 C -0.008 4.008 7 C -0.230 4.230 8 C 0.351 3.649 9 O -0.412 6.412 10 N -0.376 5.376 11 C 0.002 3.998 12 C -0.130 4.130 13 C -0.144 4.144 14 C -0.165 4.165 15 C 0.071 3.929 16 N -0.319 5.319 17 C -0.375 4.375 18 H 0.086 0.914 19 C -0.199 4.199 20 N -0.555 5.555 21 Si 0.733 3.267 22 H -0.215 1.215 23 H -0.216 1.216 24 H -0.205 1.205 25 C 0.016 3.984 26 C -0.130 4.130 27 C 0.021 3.979 28 N -0.268 5.268 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.099 0.901 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.167 0.833 35 H 0.174 0.826 36 H 0.232 0.768 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.056 0.944 43 H 0.108 0.892 44 H 0.063 0.937 45 H 0.042 0.958 46 H 0.075 0.925 47 H 0.072 0.928 48 H 0.080 0.920 49 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -31.169 1.923 -3.517 31.426 hybrid contribution 0.834 -0.640 0.096 1.055 sum -30.335 1.283 -3.421 30.555 Atomic orbital electron populations 1.21835 0.92773 1.03123 1.03417 1.22696 0.94952 0.80603 1.02863 1.86222 1.16685 1.31252 1.86807 1.20060 0.84120 0.90009 0.89353 1.21079 0.95613 0.95915 1.09117 1.21558 0.91473 0.99607 0.88165 1.20855 0.94728 0.95224 1.12230 1.17875 0.85734 0.84656 0.76640 1.90814 1.74967 1.25715 1.49723 1.46010 1.07870 1.08494 1.75240 1.21498 0.77064 0.98211 1.03065 1.20917 0.94687 0.95173 1.02215 1.20210 0.92310 1.05925 0.95932 1.23125 0.99865 0.97485 0.96035 1.19705 0.84334 1.00828 0.88006 1.44125 1.27406 1.55538 1.04788 1.19183 0.97754 1.25071 0.95455 0.91430 1.24981 0.97820 0.99737 0.97399 1.70015 1.40121 1.40378 1.04951 0.86256 0.81597 0.81848 0.76960 1.21506 1.21603 1.20517 1.20952 0.91174 0.93802 0.92454 1.20760 0.97893 1.00514 0.93866 1.22624 0.89293 0.96249 0.89755 1.67333 1.06255 1.32898 1.20271 0.91556 0.91566 0.90089 0.91297 0.91293 0.83264 0.82639 0.76795 0.90999 0.90977 0.91392 0.91465 0.89061 0.94422 0.89155 0.93658 0.95847 0.92545 0.92844 0.91975 0.81966 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.63 10.28 37.16 0.38 -0.25 16 2 C 0.06 0.40 6.02 37.16 0.22 0.62 16 3 O -0.30 -2.54 10.10 -18.20 -0.18 -2.73 16 4 C 0.34 3.09 7.49 -16.96 -0.13 2.96 16 5 C -0.20 -1.55 10.02 -39.34 -0.39 -1.94 16 6 C 0.02 0.15 9.70 -38.92 -0.38 -0.22 16 7 C -0.22 -2.13 5.89 -104.82 -0.62 -2.75 16 8 C 0.56 6.67 7.77 -12.43 -0.10 6.57 16 9 O -0.53 -8.39 16.41 5.29 0.09 -8.30 16 10 N -0.72 -7.27 5.51 -61.32 -0.34 -7.61 16 11 C 0.12 1.53 5.66 -4.04 -0.02 1.51 16 12 C -0.09 -1.14 5.32 -27.88 -0.15 -1.29 16 13 C -0.14 -2.41 5.11 -100.99 -0.52 -2.93 16 14 C -0.15 -2.78 9.47 -35.78 -0.34 -3.12 16 15 C 0.20 4.71 5.23 -5.10 -0.03 4.69 16 16 N -0.60 -15.05 3.01 -173.67 -0.52 -15.58 16 17 C -0.25 -6.76 9.71 -15.06 -0.15 -6.91 16 18 H 0.07 1.82 7.88 -52.48 -0.41 1.41 16 19 C 0.00 -0.04 5.01 -17.43 -0.09 -0.13 16 20 N -0.91 -26.37 11.08 55.49 0.61 -25.76 16 21 Si 0.90 21.73 29.58 -169.99 -5.03 16.70 16 22 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 25 C 0.14 3.01 6.58 -3.53 -0.02 2.99 16 26 C -0.09 -1.59 5.94 -28.19 -0.17 -1.76 16 27 C 0.18 1.45 10.71 -17.14 -0.18 1.26 16 28 N -0.54 -4.95 9.18 -12.97 -0.12 -5.07 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 32 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 33 H 0.07 0.43 8.10 -51.93 -0.42 0.01 16 34 H 0.15 0.85 8.06 -52.48 -0.42 0.43 16 35 H 0.16 1.26 7.73 -52.49 -0.41 0.85 16 36 H 0.40 2.75 6.53 -40.82 -0.27 2.48 16 37 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 38 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 39 H 0.07 0.75 8.11 -51.93 -0.42 0.33 16 40 H 0.07 0.76 7.78 -51.93 -0.40 0.36 16 41 H 0.09 1.54 7.73 -52.49 -0.41 1.13 16 42 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.09 2.40 6.41 -51.93 -0.33 2.07 16 44 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 45 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 46 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 47 H 0.05 0.80 8.07 -51.93 -0.42 0.38 16 48 H 0.06 1.10 8.14 -51.93 -0.42 0.67 16 49 H 0.16 0.84 6.41 -52.49 -0.34 0.51 16 LS Contribution 404.36 15.07 6.09 6.09 Total: -1.00 -33.20 404.36 -9.66 -42.87 By element: Atomic # 1 Polarization: 7.68 SS G_CDS: -7.60 Total: 0.08 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -2.67 Total: -0.69 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -0.36 Total: -54.02 kcal Atomic # 8 Polarization: -10.93 SS G_CDS: -0.10 Total: -11.03 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.70 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -33.20 -9.66 -42.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160285112.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.077 kcal (2) G-P(sol) polarization free energy of solvation -33.205 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.873 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds