Wall clock time and date at job start Wed Apr 1 2020 05:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42905 * 109.46841 * 2 1 4 4 C 1.35502 * 116.99650 * 180.02562 * 3 2 1 5 5 C 1.39166 * 119.52482 * 180.02562 * 4 3 2 6 6 C 1.37954 * 119.26730 * 179.97438 * 5 4 3 7 7 C 1.40281 * 118.35354 * 0.02562 * 6 5 4 8 8 C 1.47616 * 120.49962 * 180.02562 * 7 6 5 9 9 O 1.21589 * 119.99891 * 359.97438 * 8 7 6 10 10 N 1.34773 * 120.00398 * 179.97438 * 8 7 6 11 11 C 1.46499 * 120.00172 * 179.97438 * 10 8 7 12 12 C 1.53002 * 109.47066 * 179.97438 * 11 10 8 13 13 C 1.50697 * 109.46992 * 179.97438 * 12 11 10 14 14 C 1.29454 * 117.69309 * 95.00370 * 13 12 11 15 15 C 1.50319 * 123.65308 * 180.57644 * 14 13 12 16 16 N 1.47013 * 109.16670 * 349.27852 * 15 14 13 17 17 C 1.36927 * 121.37514 * 222.96985 * 16 15 14 18 18 H 1.08007 * 119.99875 * 155.97934 * 17 16 15 19 19 C 1.38816 * 120.00301 * 335.97289 * 17 16 15 20 20 N 1.31613 * 120.00223 * 344.50115 * 19 17 16 21 21 Si 1.86807 * 120.00023 * 164.49546 * 19 17 16 22 22 H 1.48497 * 109.46704 * 94.45760 * 21 19 17 23 23 H 1.48496 * 109.46994 * 214.45860 * 21 19 17 24 24 H 1.48496 * 109.47070 * 334.45894 * 21 19 17 25 25 C 1.47338 * 117.24593 * 42.94916 * 16 15 14 26 26 C 1.49963 * 117.69536 * 275.22014 * 13 12 11 27 27 C 1.39529 * 119.00743 * 0.26622 * 7 6 5 28 28 N 1.31672 * 120.61949 * 359.43267 * 27 7 6 29 29 H 1.08999 * 109.46887 * 300.00134 * 1 2 3 30 30 H 1.08997 * 109.47193 * 59.99555 * 1 2 3 31 31 H 1.09003 * 109.47218 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.46775 * 240.00749 * 2 1 3 33 33 H 1.08993 * 109.47371 * 119.99969 * 2 1 3 34 34 H 1.08008 * 120.36601 * 359.95931 * 5 4 3 35 35 H 1.07999 * 120.82442 * 179.97438 * 6 5 4 36 36 H 0.97005 * 119.99819 * 359.97438 * 10 8 7 37 37 H 1.08997 * 109.47229 * 60.00052 * 11 10 8 38 38 H 1.09004 * 109.47257 * 299.99911 * 11 10 8 39 39 H 1.09002 * 109.47107 * 60.00437 * 12 11 10 40 40 H 1.08996 * 109.47396 * 300.00066 * 12 11 10 41 41 H 1.07998 * 118.17606 * 0.85593 * 14 13 12 42 42 H 1.09003 * 109.52678 * 109.18260 * 15 14 13 43 43 H 1.08996 * 109.52663 * 229.37273 * 15 14 13 44 44 H 0.97000 * 120.00990 * 179.97438 * 20 19 17 45 45 H 1.08998 * 109.78220 * 57.81154 * 25 16 15 46 46 H 1.08996 * 109.77666 * 178.61809 * 25 16 15 47 47 H 1.09002 * 109.43565 * 40.82068 * 26 13 12 48 48 H 1.08996 * 109.13473 * 281.43391 * 26 13 12 49 49 H 1.07993 * 119.69106 * 179.73035 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3496 1.5249 -0.0005 5 6 3.8709 2.8152 0.0000 6 6 5.2393 2.9898 0.0000 7 6 6.0564 1.8495 -0.0011 8 6 7.5267 1.9814 -0.0006 9 8 8.0381 3.0845 0.0003 10 7 8.3022 0.8791 -0.0012 11 6 9.7613 1.0100 -0.0012 12 6 10.3982 -0.3812 -0.0012 13 6 11.8991 -0.2465 -0.0019 14 6 12.5078 -0.2921 1.1397 15 6 13.9970 -0.1595 1.2956 16 7 14.6296 -0.2351 -0.0293 17 6 15.7682 -0.9674 -0.2349 18 1 16.0031 -1.3345 -1.2231 19 6 16.6206 -1.2381 0.8268 20 7 16.5137 -0.5556 1.9471 21 14 17.9193 -2.5711 0.6655 22 1 19.2036 -1.9614 0.2365 23 1 18.1040 -3.2434 1.9766 24 1 17.4827 -3.5679 -0.3448 25 6 13.9876 0.5093 -1.1268 26 6 12.5819 -0.0641 -1.3246 27 6 5.4586 0.5888 -0.0078 28 7 4.1475 0.4682 -0.0018 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5138 0.8899 34 1 3.2113 3.6705 0.0001 35 1 5.6709 3.9798 -0.0001 36 1 7.8942 -0.0010 -0.0015 37 1 10.0774 1.5539 0.8889 38 1 10.0772 1.5546 -0.8910 39 1 10.0822 -0.9254 -0.8912 40 1 10.0823 -0.9254 0.8887 41 1 11.9130 -0.4378 2.0292 42 1 14.2310 0.8001 1.7567 43 1 14.3708 -0.9675 1.9243 44 1 17.1090 -0.7449 2.6891 45 1 13.9218 1.5658 -0.8670 46 1 14.5671 0.3894 -2.0422 47 1 11.9982 0.6176 -1.9432 48 1 12.6535 -1.0294 -1.8258 49 1 6.0771 -0.2964 -0.0131 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160285112.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:37 Heat of formation + Delta-G solvation = -26.869272 kcal Electronic energy + Delta-G solvation = -28490.086757 eV Core-core repulsion = 24417.386316 eV Total energy + Delta-G solvation = -4072.700441 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.95138 -40.65231 -39.48008 -38.83417 -36.77400 -35.18144 -33.66176 -33.40407 -32.93333 -31.61463 -31.30309 -29.87846 -27.19255 -25.49269 -25.32073 -24.54888 -23.90155 -23.15686 -22.45809 -21.84363 -19.71330 -19.45434 -18.85804 -18.17523 -17.52769 -17.38352 -17.03191 -16.65013 -16.54123 -16.00239 -15.69255 -15.50879 -15.39058 -15.13659 -15.09194 -14.98893 -14.71729 -14.29005 -14.27326 -13.89170 -13.82713 -13.36764 -13.33164 -13.30949 -13.17535 -12.82510 -12.78083 -12.56873 -12.51168 -12.34502 -12.16655 -11.88472 -11.74592 -11.66292 -11.41661 -11.14406 -11.11131 -10.70728 -10.67582 -10.20970 -9.64222 -9.46630 -8.73941 -7.87352 -5.29269 -0.40550 0.09200 1.43175 1.47176 1.48097 1.58440 1.75588 1.90094 2.12448 2.51760 2.72560 3.08301 3.29590 3.59052 3.68562 3.75971 3.91381 3.95562 3.99454 4.08971 4.13476 4.14701 4.20005 4.32321 4.45534 4.53562 4.56951 4.61199 4.65911 4.71831 4.86007 4.88609 4.92809 4.95525 4.99725 5.01194 5.11093 5.19850 5.20138 5.25847 5.27027 5.37432 5.43672 5.52234 5.61734 5.90260 6.09585 6.30561 6.34497 6.46852 6.59711 7.14097 7.14302 7.84449 8.39244 9.21270 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028270 B = 0.001533 C = 0.001495 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.218755 B =18256.858630 C =18721.277380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.311 6.311 4 C 0.334 3.666 5 C -0.195 4.195 6 C 0.013 3.987 7 C -0.236 4.236 8 C 0.566 3.434 9 O -0.581 6.581 10 N -0.709 5.709 11 C 0.132 3.868 12 C -0.080 4.080 13 C -0.120 4.120 14 C -0.174 4.174 15 C 0.206 3.794 16 N -0.615 5.615 17 C -0.258 4.258 18 H 0.071 0.929 19 C -0.056 4.056 20 N -0.941 5.941 21 Si 0.970 3.030 22 H -0.286 1.286 23 H -0.293 1.293 24 H -0.268 1.268 25 C 0.134 3.866 26 C -0.087 4.087 27 C 0.187 3.813 28 N -0.554 5.554 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.068 0.932 33 H 0.067 0.933 34 H 0.168 0.832 35 H 0.157 0.843 36 H 0.415 0.585 37 H 0.052 0.948 38 H 0.063 0.937 39 H 0.095 0.905 40 H 0.086 0.914 41 H 0.114 0.886 42 H 0.001 0.999 43 H 0.055 0.945 44 H 0.249 0.751 45 H 0.017 0.983 46 H 0.058 0.942 47 H 0.087 0.913 48 H 0.069 0.931 49 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -33.626 0.219 -5.027 34.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.015 4.015 3 O -0.217 6.217 4 C 0.156 3.844 5 C -0.215 4.215 6 C -0.013 4.013 7 C -0.242 4.242 8 C 0.354 3.646 9 O -0.462 6.462 10 N -0.361 5.361 11 C 0.009 3.991 12 C -0.117 4.117 13 C -0.121 4.121 14 C -0.194 4.194 15 C 0.081 3.919 16 N -0.339 5.339 17 C -0.388 4.388 18 H 0.089 0.911 19 C -0.251 4.251 20 N -0.588 5.588 21 Si 0.798 3.202 22 H -0.213 1.213 23 H -0.219 1.219 24 H -0.193 1.193 25 C 0.009 3.991 26 C -0.126 4.126 27 C 0.029 3.971 28 N -0.278 5.278 29 H 0.084 0.916 30 H 0.085 0.915 31 H 0.117 0.883 32 H 0.086 0.914 33 H 0.086 0.914 34 H 0.186 0.814 35 H 0.174 0.826 36 H 0.254 0.746 37 H 0.071 0.929 38 H 0.081 0.919 39 H 0.114 0.886 40 H 0.104 0.896 41 H 0.132 0.868 42 H 0.019 0.981 43 H 0.073 0.927 44 H 0.058 0.942 45 H 0.035 0.965 46 H 0.077 0.923 47 H 0.105 0.895 48 H 0.087 0.913 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -33.786 0.309 -4.907 34.142 hybrid contribution 1.565 -0.097 0.440 1.628 sum -32.222 0.213 -4.467 32.530 Atomic orbital electron populations 1.21849 0.91170 1.04279 1.03389 1.22874 0.96219 0.79708 1.02728 1.86225 1.16423 1.32513 1.86584 1.20325 0.84483 0.90450 0.89167 1.21247 0.95467 0.96344 1.08475 1.21669 0.91887 0.99688 0.88034 1.20728 0.93315 0.96233 1.13948 1.18175 0.86630 0.84179 0.75628 1.90796 1.75876 1.27471 1.52007 1.45777 1.06832 1.09171 1.74356 1.21229 0.78340 0.97765 1.01792 1.20819 0.90804 0.95522 1.04558 1.20571 0.95070 1.01773 0.94663 1.22819 0.96815 1.01506 0.98224 1.19352 0.87807 0.97704 0.87031 1.44418 1.27398 1.56037 1.06040 1.19550 0.98500 1.25134 0.95641 0.91122 1.25784 1.00185 1.01874 0.97213 1.70195 1.41126 1.41921 1.05600 0.85212 0.78905 0.79242 0.76810 1.21326 1.21887 1.19310 1.21159 0.93373 0.93336 0.91237 1.20718 0.95721 1.01319 0.94835 1.23013 0.89212 0.96606 0.88298 1.67401 1.06577 1.33039 1.20770 0.91592 0.91548 0.88344 0.91364 0.91443 0.81402 0.82580 0.74624 0.92944 0.91908 0.88623 0.89596 0.86829 0.98114 0.92719 0.94173 0.96503 0.92302 0.89480 0.91305 0.79074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 10.28 71.98 0.74 -0.22 16 2 C 0.06 0.65 6.02 71.98 0.43 1.08 16 3 O -0.31 -4.77 10.10 -88.03 -0.89 -5.66 16 4 C 0.33 5.48 7.49 84.83 0.64 6.12 16 5 C -0.20 -2.79 10.02 22.43 0.22 -2.57 16 6 C 0.01 0.21 9.70 22.70 0.22 0.43 16 7 C -0.24 -4.09 5.89 -19.99 -0.12 -4.21 16 8 C 0.57 12.50 7.77 86.72 0.67 13.17 16 9 O -0.58 -18.01 16.41 -4.00 -0.07 -18.07 16 10 N -0.71 -12.21 5.51 -466.18 -2.57 -14.78 16 11 C 0.13 2.92 5.66 86.38 0.49 3.41 16 12 C -0.08 -1.65 5.32 29.85 0.16 -1.49 16 13 C -0.12 -3.77 5.11 -15.14 -0.08 -3.85 16 14 C -0.17 -6.60 9.47 27.11 0.26 -6.34 16 15 C 0.21 10.34 5.23 85.42 0.45 10.78 16 16 N -0.61 -31.77 3.01 -703.38 -2.12 -33.89 16 17 C -0.26 -14.48 9.71 84.04 0.82 -13.67 16 18 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 19 C -0.06 -3.18 5.01 84.86 0.43 -2.76 16 20 N -0.94 -56.81 11.08 21.65 0.24 -56.57 16 21 Si 0.97 45.39 29.58 68.60 2.03 47.42 16 22 H -0.29 -13.22 7.11 99.48 0.71 -12.51 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 25 C 0.13 5.63 6.58 86.25 0.57 6.20 16 26 C -0.09 -2.83 5.94 29.65 0.18 -2.65 16 27 C 0.19 2.54 10.71 85.03 0.91 3.45 16 28 N -0.55 -8.92 9.18 -307.82 -2.82 -11.74 16 29 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 32 H 0.07 0.75 8.10 -2.38 -0.02 0.73 16 33 H 0.07 0.75 8.10 -2.39 -0.02 0.73 16 34 H 0.17 1.65 8.06 -2.91 -0.02 1.63 16 35 H 0.16 2.47 7.73 -2.91 -0.02 2.45 16 36 H 0.42 4.04 6.53 -92.70 -0.60 3.44 16 37 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 38 H 0.06 1.54 8.08 -2.39 -0.02 1.52 16 39 H 0.10 1.57 8.11 -2.39 -0.02 1.55 16 40 H 0.09 1.56 7.78 -2.39 -0.02 1.54 16 41 H 0.11 3.73 7.73 -2.91 -0.02 3.70 16 42 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 43 H 0.05 3.07 6.41 -2.39 -0.02 3.06 16 44 H 0.25 14.54 8.31 -92.71 -0.77 13.77 16 45 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 46 H 0.06 2.38 7.96 -2.39 -0.02 2.36 16 47 H 0.09 2.29 8.07 -2.39 -0.02 2.27 16 48 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 49 H 0.19 1.25 6.41 -2.91 -0.02 1.23 16 Total: -1.00 -75.08 404.36 1.13 -73.94 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: 0.35 Total: 12.47 kcal Atomic # 6 Polarization: -0.09 SS G_CDS: 6.98 Total: 6.88 kcal Atomic # 7 Polarization: -109.71 SS G_CDS: -7.27 Total: -116.98 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: -0.96 Total: -23.73 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.42 kcal Total: -75.08 1.13 -73.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160285112.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.075 kcal (2) G-P(sol) polarization free energy of solvation -75.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds