Wall clock time and date at job start Wed Apr 1 2020 05:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42907 * 109.46652 * 2 1 4 4 C 1.35682 * 116.99607 * 180.02562 * 3 2 1 5 5 C 1.38904 * 119.62102 * 179.97438 * 4 3 2 6 6 C 1.39572 * 118.94297 * 179.97438 * 5 4 3 7 7 C 1.48160 * 120.88575 * 180.02562 * 6 5 4 8 8 O 1.21512 * 120.00625 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99963 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00109 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47191 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47225 * 179.97438 * 11 10 9 13 13 C 1.29452 * 117.69233 * 95.00476 * 12 11 10 14 14 C 1.50327 * 123.65264 * 180.57855 * 13 12 11 15 15 N 1.47000 * 109.16339 * 349.27440 * 14 13 12 16 16 C 1.36939 * 121.37519 * 222.96589 * 15 14 13 17 17 H 1.08005 * 119.99838 * 155.97782 * 16 15 14 18 18 C 1.38810 * 120.00205 * 335.97906 * 16 15 14 19 19 N 1.31617 * 119.99875 * 344.51418 * 18 16 15 20 20 Si 1.86807 * 119.99988 * 164.50951 * 18 16 15 21 21 H 1.48498 * 109.46949 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46820 * 120.00005 * 20 18 16 23 23 H 1.48497 * 109.46961 * 240.00068 * 20 18 16 24 24 C 1.47340 * 117.24944 * 42.95351 * 15 14 13 25 25 C 1.49965 * 117.69465 * 275.22225 * 12 11 10 26 26 C 1.39968 * 118.21924 * 0.27616 * 6 5 4 27 27 C 1.37975 * 119.13409 * 359.43066 * 26 6 5 28 28 N 1.31914 * 120.97451 * 0.58505 * 27 26 6 29 29 H 1.08996 * 109.47528 * 60.00280 * 1 2 3 30 30 H 1.09000 * 109.46752 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46893 * 299.99725 * 1 2 3 32 32 H 1.09002 * 109.47010 * 240.00727 * 2 1 3 33 33 H 1.08996 * 109.47528 * 119.99720 * 2 1 3 34 34 H 1.07992 * 120.52441 * 359.97438 * 5 4 3 35 35 H 0.97000 * 119.99724 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47398 * 59.99913 * 10 9 7 37 37 H 1.09000 * 109.47227 * 299.99632 * 10 9 7 38 38 H 1.09004 * 109.46997 * 60.00223 * 11 10 9 39 39 H 1.08997 * 109.47552 * 300.00263 * 11 10 9 40 40 H 1.08007 * 118.17640 * 0.85757 * 13 12 11 41 41 H 1.08998 * 109.52186 * 109.18887 * 14 13 12 42 42 H 1.08999 * 109.51691 * 229.36942 * 14 13 12 43 43 H 0.97002 * 119.99820 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.78029 * 57.80236 * 24 15 14 45 45 H 1.09002 * 109.77908 * 178.61294 * 24 15 14 46 46 H 1.08998 * 109.43384 * 40.82027 * 25 12 11 47 47 H 1.09000 * 109.13218 * 281.42810 * 25 12 11 48 48 H 1.07999 * 120.42932 * 179.72922 * 26 6 5 49 49 H 1.08000 * 119.51030 * 180.31495 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3514 1.5252 -0.0005 5 6 3.8738 2.8122 -0.0011 6 6 5.2596 2.9787 -0.0011 7 6 5.8630 4.3319 -0.0011 8 8 5.1494 5.3154 -0.0016 9 7 7.2035 4.4720 -0.0017 10 6 7.8002 5.8099 -0.0011 11 6 9.3253 5.6881 -0.0013 12 6 9.9391 7.0644 -0.0013 13 6 10.2756 7.5731 1.1405 14 6 10.8855 8.9382 1.2971 15 7 11.2598 9.4543 -0.0275 16 6 12.4541 10.0919 -0.2328 17 1 12.8891 10.1186 -1.2211 18 6 13.1058 10.7038 0.8291 19 7 12.4578 10.9422 1.9496 20 14 14.9026 11.1889 0.6678 21 1 15.3970 10.8152 -0.6817 22 1 15.0380 12.6558 0.8553 23 1 15.7008 10.4819 1.7013 24 6 10.2969 9.2570 -1.1251 25 6 10.1125 7.7502 -1.3237 26 6 6.0638 1.8332 -0.0065 27 6 5.4634 0.5909 0.0004 28 7 4.1497 0.4718 0.0004 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.2181 3.6703 -0.0015 35 1 7.7732 3.6868 -0.0017 36 1 7.4793 6.3505 0.8893 37 1 7.4786 6.3515 -0.8907 38 1 9.6466 5.1474 -0.8915 39 1 9.6468 5.1466 0.8884 40 1 10.1131 6.9822 2.0299 41 1 10.1617 9.6098 1.7586 42 1 11.7733 8.8704 1.9258 43 1 12.9131 11.3702 2.6915 44 1 9.3422 9.7142 -0.8650 45 1 10.6839 9.7050 -2.0403 46 1 9.2328 7.5729 -1.9423 47 1 10.9904 7.3426 -1.8251 48 1 7.1402 1.9206 -0.0111 49 1 6.0782 -0.2970 0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161178468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:44 Heat of formation + Delta-G solvation = -2.911455 kcal Electronic energy + Delta-G solvation = -28492.531748 eV Core-core repulsion = 24420.870196 eV Total energy + Delta-G solvation = -4071.661552 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -41.25580 -39.82285 -38.29638 -37.87996 -35.58001 -33.77074 -33.01169 -32.53910 -31.37537 -30.36531 -29.85085 -28.76448 -25.99679 -24.88821 -23.80807 -23.44422 -22.85281 -22.38073 -21.11998 -20.81516 -19.09895 -17.71561 -17.59295 -16.87887 -16.74761 -16.21252 -15.97934 -15.77488 -15.54406 -15.05550 -14.73303 -14.48337 -14.32622 -14.18049 -13.98575 -13.90822 -13.60436 -13.34244 -13.06462 -12.81084 -12.66971 -12.46779 -12.23484 -12.04120 -11.97714 -11.61424 -11.43883 -11.23178 -11.04686 -10.92570 -10.74848 -10.60865 -10.37357 -10.28638 -10.26026 -10.02545 -9.81276 -9.55591 -9.28206 -9.00647 -8.66095 -7.93891 -6.72405 -5.78564 -3.17269 0.27126 0.66676 2.40098 2.56714 2.78245 3.05400 3.37562 3.40378 3.45129 3.47289 3.79656 4.15987 4.45753 4.49880 4.50940 4.55552 4.57359 4.64941 4.91587 5.05879 5.09551 5.17215 5.22489 5.26665 5.31931 5.37353 5.39872 5.53668 5.57172 5.59092 5.61255 5.75862 5.83590 5.96398 5.98805 6.11933 6.18703 6.23720 6.39158 6.55045 6.77926 6.78668 6.90508 7.16347 7.23093 7.31353 7.32621 7.40198 7.75632 7.86783 7.87772 8.39442 9.21003 9.83864 10.42427 11.31854 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.037733 B = 0.001498 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.884775 B =18690.952999 C =18892.925642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.066 3.934 3 O -0.304 6.304 4 C 0.322 3.678 5 C -0.133 4.133 6 C -0.050 4.050 7 C 0.555 3.445 8 O -0.523 6.523 9 N -0.718 5.718 10 C 0.123 3.877 11 C -0.092 4.092 12 C -0.144 4.144 13 C -0.145 4.145 14 C 0.196 3.804 15 N -0.595 5.595 16 C -0.245 4.245 17 H 0.069 0.931 18 C -0.002 4.002 19 N -0.909 5.909 20 Si 0.904 3.096 21 H -0.278 1.278 22 H -0.291 1.291 23 H -0.290 1.290 24 C 0.143 3.857 25 C -0.091 4.091 26 C -0.183 4.183 27 C 0.139 3.861 28 N -0.529 5.529 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.155 0.845 35 H 0.400 0.600 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.068 0.932 39 H 0.067 0.933 40 H 0.091 0.909 41 H 0.038 0.962 42 H 0.091 0.909 43 H 0.253 0.747 44 H 0.024 0.976 45 H 0.056 0.944 46 H 0.053 0.947 47 H 0.062 0.938 48 H 0.143 0.857 49 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.567 -25.171 -3.684 30.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.009 4.009 3 O -0.211 6.211 4 C 0.143 3.857 5 C -0.154 4.154 6 C -0.060 4.060 7 C 0.340 3.660 8 O -0.399 6.399 9 N -0.370 5.370 10 C 0.000 4.000 11 C -0.129 4.129 12 C -0.144 4.144 13 C -0.164 4.164 14 C 0.071 3.929 15 N -0.319 5.319 16 C -0.374 4.374 17 H 0.086 0.914 18 C -0.200 4.200 19 N -0.555 5.555 20 Si 0.734 3.266 21 H -0.203 1.203 22 H -0.218 1.218 23 H -0.216 1.216 24 C 0.016 3.984 25 C -0.130 4.130 26 C -0.204 4.204 27 C -0.016 4.016 28 N -0.253 5.253 29 H 0.085 0.915 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.173 0.827 35 H 0.235 0.765 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.109 0.891 41 H 0.056 0.944 42 H 0.109 0.891 43 H 0.063 0.937 44 H 0.042 0.958 45 H 0.075 0.925 46 H 0.072 0.928 47 H 0.080 0.920 48 H 0.160 0.840 49 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -18.593 -24.959 -3.549 31.325 hybrid contribution 1.681 0.329 0.107 1.716 sum -16.912 -24.630 -3.442 30.074 Atomic orbital electron populations 1.21834 0.92833 1.02997 1.03521 1.22648 0.94915 0.80747 1.02581 1.86269 1.16379 1.30958 1.87509 1.19643 0.84322 0.89407 0.92316 1.21159 0.94642 0.96519 1.03122 1.20171 0.93342 0.93899 0.98616 1.18070 0.82588 0.88006 0.77337 1.90823 1.61067 1.39395 1.48602 1.45993 1.06056 1.10400 1.74567 1.21544 0.92942 0.82281 1.03202 1.20913 0.92674 0.97103 1.02251 1.20204 1.03455 0.94821 0.95959 1.23136 0.97678 0.99600 0.96022 1.19708 0.98480 0.86682 0.88021 1.44136 1.17176 1.65763 1.04797 1.19232 0.95444 1.27278 0.95474 0.91350 1.24987 0.98915 0.98653 0.97402 1.70028 1.34763 1.45719 1.04949 0.86191 0.85161 0.77780 0.77483 1.20321 1.21756 1.21630 1.20954 0.92987 0.91989 0.92466 1.20761 0.99873 0.98555 0.93846 1.22168 1.01280 0.92689 1.04284 1.22384 0.88955 0.97259 0.93045 1.67219 1.06874 1.33336 1.17899 0.91529 0.90187 0.91516 0.91500 0.91487 0.82701 0.76478 0.90866 0.90838 0.91354 0.91431 0.89053 0.94399 0.89129 0.93688 0.95837 0.92522 0.92847 0.91957 0.83954 0.81584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.28 37.16 0.38 -0.37 16 2 C 0.07 0.46 6.03 37.16 0.22 0.68 16 3 O -0.30 -2.95 10.11 -18.75 -0.19 -3.14 16 4 C 0.32 3.26 7.49 -17.16 -0.13 3.13 16 5 C -0.13 -1.39 9.61 -38.84 -0.37 -1.77 16 6 C -0.05 -0.49 5.91 -104.68 -0.62 -1.10 16 7 C 0.55 6.64 7.80 -12.18 -0.09 6.55 16 8 O -0.52 -8.35 16.44 5.35 0.09 -8.26 16 9 N -0.72 -7.13 5.51 -61.15 -0.34 -7.46 16 10 C 0.12 1.49 5.66 -4.04 -0.02 1.47 16 11 C -0.09 -1.11 5.32 -27.89 -0.15 -1.26 16 12 C -0.14 -2.39 5.11 -100.99 -0.52 -2.91 16 13 C -0.14 -2.74 9.47 -35.78 -0.34 -3.08 16 14 C 0.20 4.69 5.23 -5.10 -0.03 4.66 16 15 N -0.60 -14.99 3.01 -173.68 -0.52 -15.51 16 16 C -0.24 -6.73 9.71 -15.06 -0.15 -6.87 16 17 H 0.07 1.84 7.88 -52.48 -0.41 1.43 16 18 C 0.00 -0.05 5.01 -17.43 -0.09 -0.14 16 19 N -0.91 -26.31 11.08 55.49 0.61 -25.69 16 20 Si 0.90 21.67 29.58 -169.99 -5.03 16.64 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 C 0.14 2.99 6.58 -3.53 -0.02 2.97 16 25 C -0.09 -1.58 5.94 -28.19 -0.17 -1.74 16 26 C -0.18 -1.25 9.61 -39.03 -0.38 -1.62 16 27 C 0.14 0.94 11.17 -17.61 -0.20 0.74 16 28 N -0.53 -4.80 9.18 -13.38 -0.12 -4.93 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 33 H 0.07 0.45 8.10 -51.93 -0.42 0.03 16 34 H 0.16 1.68 7.74 -52.49 -0.41 1.28 16 35 H 0.40 2.68 6.61 -40.82 -0.27 2.41 16 36 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 0.98 8.07 -51.93 -0.42 0.56 16 38 H 0.07 0.74 8.11 -51.93 -0.42 0.31 16 39 H 0.07 0.75 7.78 -51.93 -0.40 0.35 16 40 H 0.09 1.52 7.73 -52.48 -0.41 1.12 16 41 H 0.04 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.09 2.40 6.41 -51.93 -0.33 2.07 16 43 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 44 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.06 1.15 7.96 -51.93 -0.41 0.74 16 46 H 0.05 0.79 8.07 -51.93 -0.42 0.37 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.14 0.54 6.53 -52.49 -0.34 0.20 16 49 H 0.17 0.57 8.06 -52.49 -0.42 0.14 16 LS Contribution 404.63 15.07 6.10 6.10 Total: -1.00 -33.28 404.63 -9.67 -42.94 By element: Atomic # 1 Polarization: 7.59 SS G_CDS: -7.61 Total: -0.01 kcal Atomic # 6 Polarization: 1.99 SS G_CDS: -2.66 Total: -0.67 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -0.37 Total: -53.60 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: -0.10 Total: -11.41 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.03 Total: 16.64 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.28 -9.67 -42.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161178468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.032 kcal (2) G-P(sol) polarization free energy of solvation -33.279 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.665 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.911 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds