Wall clock time and date at job start Wed Apr 1 2020 05:33:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 O 1.42907 * 109.46652 * 2 1 4 4 C 1.35682 * 116.99607 * 180.02562 * 3 2 1 5 5 C 1.38904 * 119.62102 * 179.97438 * 4 3 2 6 6 C 1.39572 * 118.94297 * 179.97438 * 5 4 3 7 7 C 1.48160 * 120.88575 * 180.02562 * 6 5 4 8 8 O 1.21512 * 120.00625 * 359.97438 * 7 6 5 9 9 N 1.34784 * 119.99963 * 180.02562 * 7 6 5 10 10 C 1.46494 * 120.00109 * 180.02562 * 9 7 6 11 11 C 1.53000 * 109.47191 * 179.97438 * 10 9 7 12 12 C 1.50695 * 109.47225 * 179.97438 * 11 10 9 13 13 C 1.29452 * 117.69233 * 95.00476 * 12 11 10 14 14 C 1.50327 * 123.65264 * 180.57855 * 13 12 11 15 15 N 1.47000 * 109.16339 * 349.27440 * 14 13 12 16 16 C 1.36939 * 121.37519 * 222.96589 * 15 14 13 17 17 H 1.08005 * 119.99838 * 155.97782 * 16 15 14 18 18 C 1.38810 * 120.00205 * 335.97906 * 16 15 14 19 19 N 1.31617 * 119.99875 * 344.51418 * 18 16 15 20 20 Si 1.86807 * 119.99988 * 164.50951 * 18 16 15 21 21 H 1.48498 * 109.46949 * 0.02562 * 20 18 16 22 22 H 1.48497 * 109.46820 * 120.00005 * 20 18 16 23 23 H 1.48497 * 109.46961 * 240.00068 * 20 18 16 24 24 C 1.47340 * 117.24944 * 42.95351 * 15 14 13 25 25 C 1.49965 * 117.69465 * 275.22225 * 12 11 10 26 26 C 1.39968 * 118.21924 * 0.27616 * 6 5 4 27 27 C 1.37975 * 119.13409 * 359.43066 * 26 6 5 28 28 N 1.31914 * 120.97451 * 0.58505 * 27 26 6 29 29 H 1.08996 * 109.47528 * 60.00280 * 1 2 3 30 30 H 1.09000 * 109.46752 * 179.97438 * 1 2 3 31 31 H 1.08996 * 109.46893 * 299.99725 * 1 2 3 32 32 H 1.09002 * 109.47010 * 240.00727 * 2 1 3 33 33 H 1.08996 * 109.47528 * 119.99720 * 2 1 3 34 34 H 1.07992 * 120.52441 * 359.97438 * 5 4 3 35 35 H 0.97000 * 119.99724 * 359.97438 * 9 7 6 36 36 H 1.08999 * 109.47398 * 59.99913 * 10 9 7 37 37 H 1.09000 * 109.47227 * 299.99632 * 10 9 7 38 38 H 1.09004 * 109.46997 * 60.00223 * 11 10 9 39 39 H 1.08997 * 109.47552 * 300.00263 * 11 10 9 40 40 H 1.08007 * 118.17640 * 0.85757 * 13 12 11 41 41 H 1.08998 * 109.52186 * 109.18887 * 14 13 12 42 42 H 1.08999 * 109.51691 * 229.36942 * 14 13 12 43 43 H 0.97002 * 119.99820 * 180.02562 * 19 18 16 44 44 H 1.08996 * 109.78029 * 57.80236 * 24 15 14 45 45 H 1.09002 * 109.77908 * 178.61294 * 24 15 14 46 46 H 1.08998 * 109.43384 * 40.82027 * 25 12 11 47 47 H 1.09000 * 109.13218 * 281.42810 * 25 12 11 48 48 H 1.07999 * 120.42932 * 179.72922 * 26 6 5 49 49 H 1.08000 * 119.51030 * 180.31495 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3474 0.0000 4 6 3.3514 1.5252 -0.0005 5 6 3.8738 2.8122 -0.0011 6 6 5.2596 2.9787 -0.0011 7 6 5.8630 4.3319 -0.0011 8 8 5.1494 5.3154 -0.0016 9 7 7.2035 4.4720 -0.0017 10 6 7.8002 5.8099 -0.0011 11 6 9.3253 5.6881 -0.0013 12 6 9.9391 7.0644 -0.0013 13 6 10.2756 7.5731 1.1405 14 6 10.8855 8.9382 1.2971 15 7 11.2598 9.4543 -0.0275 16 6 12.4541 10.0919 -0.2328 17 1 12.8891 10.1186 -1.2211 18 6 13.1058 10.7038 0.8291 19 7 12.4578 10.9422 1.9496 20 14 14.9026 11.1889 0.6678 21 1 15.3970 10.8152 -0.6817 22 1 15.0380 12.6558 0.8553 23 1 15.7008 10.4819 1.7013 24 6 10.2969 9.2570 -1.1251 25 6 10.1125 7.7502 -1.3237 26 6 6.0638 1.8332 -0.0065 27 6 5.4634 0.5909 0.0004 28 7 4.1497 0.4718 0.0004 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8934 -0.5137 -0.8901 33 1 1.8934 -0.5138 0.8900 34 1 3.2181 3.6703 -0.0015 35 1 7.7732 3.6868 -0.0017 36 1 7.4793 6.3505 0.8893 37 1 7.4786 6.3515 -0.8907 38 1 9.6466 5.1474 -0.8915 39 1 9.6468 5.1466 0.8884 40 1 10.1131 6.9822 2.0299 41 1 10.1617 9.6098 1.7586 42 1 11.7733 8.8704 1.9258 43 1 12.9131 11.3702 2.6915 44 1 9.3422 9.7142 -0.8650 45 1 10.6839 9.7050 -2.0403 46 1 9.2328 7.5729 -1.9423 47 1 10.9904 7.3426 -1.8251 48 1 7.1402 1.9206 -0.0111 49 1 6.0782 -0.2970 0.0015 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161178468.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:42 Heat of formation + Delta-G solvation = -25.519451 kcal Electronic energy + Delta-G solvation = -28493.512104 eV Core-core repulsion = 24420.870196 eV Total energy + Delta-G solvation = -4072.641908 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.94716 -40.69677 -39.48052 -38.88166 -36.82751 -35.22951 -33.88155 -33.18363 -32.92053 -31.48916 -30.97213 -30.15149 -27.39635 -26.00586 -24.68687 -24.41081 -24.10216 -23.47802 -22.48535 -21.79128 -19.88619 -19.43418 -18.39699 -17.70393 -17.41544 -17.35728 -17.05595 -16.81621 -16.61971 -16.60034 -15.80220 -15.52564 -15.35175 -15.19927 -15.09377 -14.95344 -14.79469 -14.75020 -14.29443 -13.86467 -13.48565 -13.37771 -13.33642 -13.19921 -13.04386 -12.81900 -12.80183 -12.59929 -12.49136 -12.35800 -12.12395 -11.89822 -11.74856 -11.67014 -11.52612 -11.16468 -11.11360 -10.74318 -10.69015 -10.21388 -9.62104 -9.47448 -8.74614 -7.87795 -5.29918 -0.44548 0.05711 1.40343 1.46802 1.47759 1.58802 1.72972 1.76880 2.18115 2.51365 2.72982 3.23509 3.29161 3.44386 3.68126 3.85314 3.92573 3.96855 3.98408 4.08346 4.10373 4.14660 4.19194 4.30492 4.44573 4.56382 4.59712 4.60192 4.68133 4.72344 4.82100 4.88094 4.91931 4.94086 4.95429 4.98783 5.07080 5.18392 5.19347 5.25279 5.27298 5.34274 5.43070 5.51886 5.61661 5.89502 6.17014 6.29782 6.34156 6.39211 6.69894 7.03699 7.13766 7.83928 8.38592 9.20920 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.037733 B = 0.001498 C = 0.001482 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.884775 B =18690.952999 C =18892.925642 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 O -0.322 6.322 4 C 0.309 3.691 5 C -0.155 4.155 6 C -0.060 4.060 7 C 0.555 3.445 8 O -0.573 6.573 9 N -0.699 5.699 10 C 0.130 3.870 11 C -0.078 4.078 12 C -0.120 4.120 13 C -0.174 4.174 14 C 0.206 3.794 15 N -0.615 5.615 16 C -0.257 4.257 17 H 0.072 0.928 18 C -0.056 4.056 19 N -0.942 5.942 20 Si 0.970 3.030 21 H -0.265 1.265 22 H -0.294 1.294 23 H -0.290 1.290 24 C 0.134 3.866 25 C -0.088 4.088 26 C -0.165 4.165 27 C 0.143 3.857 28 N -0.536 5.536 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.137 0.863 35 H 0.420 0.580 36 H 0.053 0.947 37 H 0.063 0.937 38 H 0.097 0.903 39 H 0.088 0.912 40 H 0.115 0.885 41 H 0.001 0.999 42 H 0.055 0.945 43 H 0.249 0.751 44 H 0.016 0.984 45 H 0.058 0.942 46 H 0.087 0.913 47 H 0.070 0.930 48 H 0.181 0.819 49 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.555 -28.829 -5.064 33.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.012 4.012 3 O -0.230 6.230 4 C 0.131 3.869 5 C -0.177 4.177 6 C -0.071 4.071 7 C 0.341 3.659 8 O -0.453 6.453 9 N -0.352 5.352 10 C 0.006 3.994 11 C -0.116 4.116 12 C -0.121 4.121 13 C -0.193 4.193 14 C 0.081 3.919 15 N -0.339 5.339 16 C -0.387 4.387 17 H 0.089 0.911 18 C -0.251 4.251 19 N -0.589 5.589 20 Si 0.799 3.201 21 H -0.189 1.189 22 H -0.221 1.221 23 H -0.217 1.217 24 C 0.009 3.991 25 C -0.126 4.126 26 C -0.185 4.185 27 C -0.013 4.013 28 N -0.261 5.261 29 H 0.082 0.918 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.086 0.914 34 H 0.155 0.845 35 H 0.259 0.741 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.116 0.884 39 H 0.106 0.894 40 H 0.132 0.868 41 H 0.018 0.982 42 H 0.073 0.927 43 H 0.058 0.942 44 H 0.034 0.966 45 H 0.077 0.923 46 H 0.105 0.895 47 H 0.088 0.912 48 H 0.198 0.802 49 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -17.581 -28.669 -4.957 33.993 hybrid contribution 1.331 1.437 0.458 2.012 sum -16.249 -27.231 -4.499 32.029 Atomic orbital electron populations 1.21857 0.91424 1.04311 1.03187 1.22831 0.96041 0.79683 1.02645 1.86251 1.16577 1.32566 1.87608 1.19676 0.84665 0.89473 0.93119 1.21106 0.95233 0.96399 1.04932 1.20051 0.93243 0.93711 1.00085 1.18405 0.82834 0.88310 0.76321 1.90802 1.62279 1.41175 1.51002 1.45726 1.05582 1.10389 1.73467 1.21288 0.93021 0.83139 1.01906 1.20813 0.91796 0.94214 1.04751 1.20568 1.00361 0.96556 0.94644 1.22828 1.00476 0.97757 0.98251 1.19354 0.96404 0.89138 0.87030 1.44429 1.17508 1.65914 1.06053 1.19588 0.96530 1.26954 0.95631 0.91072 1.25786 1.02839 0.99226 0.97221 1.70206 1.36214 1.46856 1.05616 0.85153 0.80238 0.76920 0.77834 1.18909 1.22069 1.21650 1.21163 0.91681 0.95064 0.91241 1.20719 1.01691 0.95334 0.94858 1.22552 1.02813 0.91364 1.01819 1.23144 0.88376 0.98727 0.91041 1.67306 1.08042 1.32845 1.17881 0.91822 0.88004 0.91863 0.91336 0.91391 0.84542 0.74112 0.92858 0.91832 0.88423 0.89391 0.86759 0.98173 0.92696 0.94184 0.96578 0.92301 0.89513 0.91199 0.80156 0.77527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.28 71.98 0.74 -0.62 16 2 C 0.06 0.84 6.03 71.98 0.43 1.27 16 3 O -0.32 -6.40 10.11 -90.00 -0.91 -7.31 16 4 C 0.31 6.17 7.49 84.80 0.63 6.81 16 5 C -0.15 -3.32 9.61 22.75 0.22 -3.10 16 6 C -0.06 -1.09 5.91 -19.90 -0.12 -1.20 16 7 C 0.55 12.58 7.80 86.88 0.68 13.26 16 8 O -0.57 -18.63 16.44 -3.75 -0.06 -18.69 16 9 N -0.70 -11.61 5.51 -465.68 -2.57 -14.18 16 10 C 0.13 2.81 5.66 86.38 0.49 3.30 16 11 C -0.08 -1.55 5.32 29.85 0.16 -1.39 16 12 C -0.12 -3.72 5.11 -15.14 -0.08 -3.79 16 13 C -0.17 -6.49 9.47 27.11 0.26 -6.24 16 14 C 0.21 10.26 5.23 85.42 0.45 10.71 16 15 N -0.61 -31.62 3.01 -703.40 -2.12 -33.73 16 16 C -0.26 -14.35 9.71 84.03 0.82 -13.53 16 17 H 0.07 3.84 7.88 -2.91 -0.02 3.81 16 18 C -0.06 -3.18 5.01 84.86 0.43 -2.76 16 19 N -0.94 -56.72 11.08 21.65 0.24 -56.48 16 20 Si 0.97 45.24 29.58 68.60 2.03 47.27 16 21 H -0.26 -11.63 7.11 99.48 0.71 -10.93 16 22 H -0.29 -13.73 7.11 99.48 0.71 -13.02 16 23 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 24 C 0.13 5.58 6.58 86.25 0.57 6.15 16 25 C -0.09 -2.79 5.94 29.65 0.18 -2.62 16 26 C -0.17 -1.60 9.61 22.63 0.22 -1.38 16 27 C 0.14 1.37 11.17 84.62 0.94 2.32 16 28 N -0.54 -8.67 9.18 -309.14 -2.84 -11.51 16 29 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.07 0.86 8.10 -2.39 -0.02 0.84 16 33 H 0.07 0.87 8.10 -2.39 -0.02 0.85 16 34 H 0.14 3.30 7.74 -2.91 -0.02 3.27 16 35 H 0.42 3.48 6.61 -92.71 -0.61 2.87 16 36 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.06 1.54 8.07 -2.39 -0.02 1.52 16 38 H 0.10 1.49 8.11 -2.38 -0.02 1.47 16 39 H 0.09 1.49 7.78 -2.39 -0.02 1.47 16 40 H 0.11 3.68 7.73 -2.91 -0.02 3.66 16 41 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 42 H 0.05 3.07 6.41 -2.39 -0.02 3.05 16 43 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 44 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 45 H 0.06 2.37 7.96 -2.39 -0.02 2.35 16 46 H 0.09 2.25 8.07 -2.39 -0.02 2.23 16 47 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 48 H 0.18 0.27 6.53 -2.91 -0.02 0.26 16 49 H 0.21 0.25 8.06 -2.91 -0.02 0.22 16 Total: -1.00 -77.80 404.63 1.12 -76.68 By element: Atomic # 1 Polarization: 10.46 SS G_CDS: 0.34 Total: 10.80 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: 7.01 Total: 7.17 kcal Atomic # 7 Polarization: -108.62 SS G_CDS: -7.28 Total: -115.90 kcal Atomic # 8 Polarization: -25.04 SS G_CDS: -0.97 Total: -26.01 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -77.80 1.12 -76.68 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161178468.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.156 kcal (2) G-P(sol) polarization free energy of solvation -77.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds