Wall clock time and date at job start Wed Apr 1 2020 05:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42901 * 109.46889 * 2 1 4 4 C 1.34933 * 117.00131 * 180.02562 * 3 2 1 5 5 O 1.21649 * 119.99963 * 359.97438 * 4 3 2 6 6 C 1.41735 * 119.99816 * 179.97438 * 4 3 2 7 7 C 1.35134 * 119.99444 * 173.29304 * 6 4 3 8 8 C 1.46907 * 120.00384 * 347.38449 * 7 6 4 9 9 C 1.40584 * 120.50290 * 314.10548 * 8 7 6 10 10 C 1.36810 * 118.46945 * 180.02562 * 9 8 7 11 11 C 1.39434 * 119.40739 * 359.97438 * 10 9 8 12 12 N 1.38519 * 119.50657 * 179.97438 * 11 10 9 13 13 C 1.46954 * 111.00203 * 303.80427 * 12 11 10 14 14 C 1.53053 * 109.36608 * 176.80887 * 13 12 11 15 15 N 1.46951 * 109.36044 * 58.39940 * 14 13 12 16 16 C 1.46909 * 110.99710 * 176.80966 * 15 14 13 17 17 C 1.50699 * 109.46708 * 59.10200 * 16 15 14 18 18 H 1.07996 * 120.00111 * 5.12617 * 17 16 15 19 19 C 1.37881 * 119.99639 * 185.13023 * 17 16 15 20 20 N 1.31505 * 119.99970 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99728 * 179.97438 * 19 17 16 22 22 H 1.48504 * 109.47229 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47189 * 119.99837 * 21 19 17 24 24 H 1.48498 * 109.47136 * 239.99738 * 21 19 17 25 25 C 1.46955 * 110.88658 * 300.67866 * 15 14 13 26 26 C 1.46959 * 110.99963 * 180.02562 * 12 11 10 27 27 N 1.32603 * 120.98733 * 359.73312 * 11 10 9 28 28 C 1.31664 * 121.65720 * 0.56044 * 27 11 10 29 29 H 1.08992 * 109.47421 * 299.99554 * 1 2 3 30 30 H 1.08992 * 109.47359 * 60.00576 * 1 2 3 31 31 H 1.09002 * 109.46727 * 180.02562 * 1 2 3 32 32 H 1.08991 * 109.47323 * 239.99905 * 2 1 3 33 33 H 1.09000 * 109.47092 * 119.99654 * 2 1 3 34 34 H 1.07991 * 120.00092 * 353.28918 * 6 4 3 35 35 H 1.07998 * 119.99670 * 167.38706 * 7 6 4 36 36 H 1.07995 * 120.76307 * 359.97438 * 9 8 7 37 37 H 1.07997 * 120.29989 * 179.97438 * 10 9 8 38 38 H 1.08997 * 109.48841 * 296.77756 * 13 12 11 39 39 H 1.09006 * 109.48553 * 56.84034 * 13 12 11 40 40 H 1.09001 * 109.48794 * 298.43466 * 14 13 12 41 41 H 1.09000 * 109.48890 * 178.36929 * 14 13 12 42 42 H 1.09003 * 109.46778 * 179.09726 * 16 15 14 43 43 H 1.08998 * 109.47144 * 299.09698 * 16 15 14 44 44 H 0.97003 * 119.99913 * 180.02562 * 20 19 17 45 45 H 1.08997 * 109.48822 * 299.35616 * 25 15 14 46 46 H 1.08997 * 109.48994 * 179.28884 * 25 15 14 47 47 H 1.08999 * 109.48769 * 303.16074 * 26 12 11 48 48 H 1.09001 * 109.48461 * 63.20707 * 26 12 11 49 49 H 1.08004 * 119.75681 * 179.71327 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3440 1.5242 -0.0005 5 8 4.0851 0.5595 -0.0005 6 6 3.8856 2.8340 -0.0011 7 6 5.2179 3.0141 0.1350 8 6 6.0711 1.8954 0.5578 9 6 5.6928 1.0777 1.6370 10 6 6.5189 0.0479 1.9958 11 6 7.7015 -0.1600 1.2870 12 7 8.5397 -1.2018 1.6488 13 6 8.9277 -1.0989 3.0625 14 6 9.7861 -2.3077 3.4425 15 7 10.9720 -2.3548 2.5759 16 6 11.8609 -3.4597 2.9597 17 6 11.1134 -4.7643 2.8576 18 1 10.1090 -4.7816 2.4611 19 6 11.7119 -5.9358 3.2705 20 7 12.9351 -5.9147 3.7528 21 14 10.7852 -7.5528 3.1446 22 1 9.4366 -7.3073 2.5733 23 1 11.5340 -8.4853 2.2643 24 1 10.6480 -8.1512 4.4968 25 6 10.5840 -2.4577 1.1622 26 6 9.7259 -1.2485 0.7826 27 7 8.0335 0.6218 0.2687 28 6 7.2716 1.6276 -0.1074 29 1 -0.3634 0.5137 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.2336 3.6879 -0.1104 35 1 5.6555 3.9806 -0.0669 36 1 4.7718 1.2589 2.1710 37 1 6.2574 -0.5984 2.8206 38 1 9.4994 -0.1839 3.2170 39 1 8.0328 -1.0783 3.6846 40 1 9.2052 -3.2211 3.3138 41 1 10.0991 -2.2189 4.4828 42 1 12.7224 -3.4814 2.2923 43 1 12.1994 -3.3141 3.9854 44 1 13.3563 -6.7389 4.0430 45 1 10.0123 -3.3727 1.0077 46 1 11.4788 -2.4782 0.5401 47 1 9.4132 -1.3371 -0.2578 48 1 10.3064 -0.3350 0.9114 49 1 7.5741 2.2477 -0.9383 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001165055979.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:06 Heat of formation + Delta-G solvation = 1.328113 kcal Electronic energy + Delta-G solvation = -29866.714209 eV Core-core repulsion = 25795.236499 eV Total energy + Delta-G solvation = -4071.477710 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.12839 -40.40451 -38.48436 -37.19647 -35.41999 -34.05401 -32.45285 -32.38679 -31.90392 -30.36810 -29.81910 -27.60179 -25.56184 -24.72039 -24.10067 -23.09715 -22.37478 -22.13640 -21.45363 -19.95417 -19.19920 -18.29656 -17.51098 -16.87132 -16.65581 -16.53517 -16.23539 -15.15144 -14.86205 -14.78342 -14.53586 -14.36643 -14.23203 -14.11671 -13.97482 -13.67245 -13.59123 -13.09792 -13.05796 -13.02662 -12.77429 -12.28778 -12.13995 -11.96738 -11.89449 -11.76601 -11.14047 -11.02070 -10.85256 -10.76960 -10.73663 -10.61817 -10.46433 -10.39056 -10.15522 -9.85152 -9.67892 -9.52879 -9.47692 -9.10320 -8.43625 -7.76695 -7.20611 -6.02961 -4.11754 0.22125 1.30497 1.55866 2.59690 2.75620 3.27038 3.35359 3.40037 3.63382 3.90742 4.36473 4.41355 4.49532 4.54678 4.59856 4.68702 4.79219 4.91976 4.95096 4.99115 5.11041 5.18845 5.27499 5.30779 5.41475 5.41794 5.53609 5.58367 5.59613 5.63296 5.70866 5.80322 5.85322 5.96566 6.03102 6.08760 6.18840 6.26577 6.29434 6.44992 6.61160 6.72345 6.83833 6.94624 7.26740 7.37025 7.52387 7.58996 7.89679 8.01993 8.07944 8.24477 8.28793 8.98808 9.55276 11.02195 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.014815 B = 0.002256 C = 0.002032 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1889.562115 B =12405.739611 C =13774.480850 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.061 3.939 3 O -0.357 6.357 4 C 0.490 3.510 5 O -0.494 6.494 6 C -0.223 4.223 7 C 0.032 3.968 8 C -0.183 4.183 9 C 0.012 3.988 10 C -0.196 4.196 11 C 0.344 3.656 12 N -0.475 5.475 13 C 0.065 3.935 14 C 0.063 3.937 15 N -0.543 5.543 16 C 0.186 3.814 17 C -0.548 4.548 18 H 0.059 0.941 19 C 0.064 3.936 20 N -0.891 5.891 21 Si 0.888 3.112 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.284 1.284 25 C 0.058 3.942 26 C 0.073 3.927 27 N -0.527 5.527 28 C 0.156 3.844 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.078 0.922 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.144 0.856 35 H 0.146 0.854 36 H 0.120 0.880 37 H 0.134 0.866 38 H 0.049 0.951 39 H 0.078 0.922 40 H 0.053 0.947 41 H 0.076 0.924 42 H 0.029 0.971 43 H 0.036 0.964 44 H 0.261 0.739 45 H 0.047 0.953 46 H 0.074 0.926 47 H 0.080 0.920 48 H 0.053 0.947 49 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.357 20.068 -6.368 29.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.013 4.013 3 O -0.275 6.275 4 C 0.337 3.663 5 O -0.383 6.383 6 C -0.242 4.242 7 C 0.012 3.988 8 C -0.187 4.187 9 C -0.013 4.013 10 C -0.218 4.218 11 C 0.111 3.889 12 N -0.191 5.191 13 C -0.060 4.060 14 C -0.066 4.066 15 N -0.268 5.268 16 C 0.061 3.939 17 C -0.587 4.587 18 H 0.077 0.923 19 C -0.138 4.138 20 N -0.530 5.530 21 Si 0.716 3.284 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.210 1.210 25 C -0.071 4.071 26 C -0.054 4.054 27 N -0.242 5.242 28 C -0.002 4.002 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.097 0.903 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.162 0.838 35 H 0.163 0.837 36 H 0.138 0.862 37 H 0.152 0.848 38 H 0.068 0.932 39 H 0.096 0.904 40 H 0.071 0.929 41 H 0.095 0.905 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.092 0.908 47 H 0.098 0.902 48 H 0.072 0.928 49 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -20.158 19.367 -6.684 28.742 hybrid contribution -1.488 -1.273 0.248 1.974 sum -21.646 18.094 -6.437 28.937 Atomic orbital electron populations 1.21804 0.92696 1.03002 1.03338 1.22596 0.95289 0.80837 1.02575 1.86197 1.24694 1.32105 1.84480 1.20166 0.80570 0.91263 0.74297 1.91032 1.59186 1.43190 1.44918 1.21319 0.95916 0.95075 1.11851 1.22472 0.91980 0.97626 0.86678 1.19656 0.98039 1.00029 1.00952 1.20944 0.95983 0.91208 0.93181 1.21121 0.95654 1.00993 1.04068 1.20093 0.92152 0.86721 0.89975 1.59002 1.18231 1.35719 1.06122 1.22455 0.99012 0.99892 0.84680 1.21963 0.91665 0.95483 0.97486 1.62726 1.15406 1.47051 1.01600 1.19753 0.91507 0.85619 0.97018 1.21794 1.01291 0.93158 1.42480 0.92284 1.24964 0.94826 0.99108 0.94924 1.69951 1.13014 1.27656 1.42348 0.86592 0.80120 0.83921 0.77729 1.19793 1.20961 1.20972 1.22058 0.97886 0.95855 0.91301 1.22154 0.88248 0.99014 0.95979 1.67671 1.33555 1.05911 1.17045 1.22640 0.88442 0.92790 0.96353 0.91556 0.91587 0.90294 0.91546 0.91482 0.83843 0.83654 0.86185 0.84794 0.93232 0.90368 0.92883 0.90549 0.95319 0.94636 0.92879 0.93436 0.90774 0.90186 0.92815 0.82882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 10.28 37.16 0.38 -0.48 16 2 C 0.06 0.52 6.10 37.16 0.23 0.75 16 3 O -0.36 -3.46 10.10 -41.13 -0.42 -3.88 16 4 C 0.49 5.14 6.87 32.07 0.22 5.36 16 5 O -0.49 -6.73 12.09 -19.38 -0.23 -6.96 16 6 C -0.22 -1.65 9.86 -39.35 -0.39 -2.04 16 7 C 0.03 0.23 9.80 -37.18 -0.36 -0.14 16 8 C -0.18 -1.98 4.36 -104.91 -0.46 -2.44 16 9 C 0.01 0.15 6.86 -39.21 -0.27 -0.12 16 10 C -0.20 -2.70 9.13 -39.65 -0.36 -3.06 16 11 C 0.34 5.42 6.40 -155.20 -0.99 4.43 16 12 N -0.48 -8.14 4.72 -173.04 -0.82 -8.96 16 13 C 0.07 1.05 5.36 -3.77 -0.02 1.03 16 14 C 0.06 1.23 5.24 -3.77 -0.02 1.21 16 15 N -0.54 -11.75 4.92 -235.90 -1.16 -12.91 16 16 C 0.19 4.79 5.14 -4.97 -0.03 4.77 16 17 C -0.55 -15.06 7.66 -34.44 -0.26 -15.33 16 18 H 0.06 1.64 5.82 -52.49 -0.31 1.33 16 19 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 20 N -0.89 -26.21 13.29 55.43 0.74 -25.47 16 21 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 22 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 25 C 0.06 1.17 5.32 -3.76 -0.02 1.15 16 26 C 0.07 1.28 4.77 -3.76 -0.02 1.26 16 27 N -0.53 -8.03 8.66 -12.05 -0.10 -8.14 16 28 C 0.16 1.88 10.96 -17.03 -0.19 1.69 16 29 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 33 H 0.07 0.59 8.13 -51.93 -0.42 0.17 16 34 H 0.14 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.15 0.52 8.06 -52.49 -0.42 0.10 16 36 H 0.12 1.26 7.40 -52.49 -0.39 0.87 16 37 H 0.13 1.71 7.15 -52.49 -0.38 1.33 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.08 1.09 6.76 -51.93 -0.35 0.73 16 40 H 0.05 1.15 6.62 -51.93 -0.34 0.80 16 41 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 42 H 0.03 0.79 8.12 -51.93 -0.42 0.36 16 43 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 44 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 45 H 0.05 1.06 6.77 -51.93 -0.35 0.71 16 46 H 0.07 1.46 8.12 -51.93 -0.42 1.04 16 47 H 0.08 1.39 7.81 -51.93 -0.41 0.98 16 48 H 0.05 0.95 8.04 -51.93 -0.42 0.54 16 49 H 0.15 1.36 8.06 -52.48 -0.42 0.93 16 LS Contribution 394.40 15.07 5.94 5.94 Total: -1.00 -32.82 394.40 -11.29 -44.11 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -7.57 Total: -0.09 kcal Atomic # 6 Polarization: 2.41 SS G_CDS: -2.66 Total: -0.25 kcal Atomic # 7 Polarization: -54.13 SS G_CDS: -1.34 Total: -55.48 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: -0.65 Total: -10.84 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.82 -11.29 -44.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001165055979.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.441 kcal (2) G-P(sol) polarization free energy of solvation -32.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds