Wall clock time and date at job start Wed Apr 1 2020 05:45:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21281 * 119.99465 * 2 1 4 4 N 1.34775 * 119.99784 * 180.02562 * 2 1 3 5 5 C 1.46925 * 120.63935 * 4.55662 * 4 2 1 6 6 C 1.52768 * 109.04072 * 233.59036 * 5 4 2 7 7 C 1.53054 * 109.37128 * 305.58399 * 6 5 4 8 8 C 1.52979 * 109.52704 * 61.16785 * 7 6 5 9 9 C 1.46949 * 120.63669 * 184.83796 * 4 2 1 10 10 C 1.53020 * 109.55230 * 178.63108 * 8 7 6 11 11 N 1.47029 * 109.26381 * 296.66141 * 10 8 7 12 12 C 1.39077 * 111.00202 * 177.71595 * 11 10 8 13 13 C 1.38750 * 119.65417 * 67.58937 * 12 11 10 14 14 C 1.40778 * 118.66595 * 180.02562 * 13 12 11 15 15 C 1.41544 * 120.99378 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00272 * 34.40954 * 15 14 13 17 17 C 1.40033 * 119.99889 * 214.41784 * 15 14 13 18 18 N 1.30745 * 119.99837 * 355.53630 * 17 15 14 19 19 Si 1.86802 * 119.99863 * 175.54060 * 17 15 14 20 20 H 1.48494 * 109.47267 * 59.99632 * 19 17 15 21 21 H 1.48507 * 109.47125 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47136 * 299.99364 * 19 17 15 23 23 C 1.41193 * 118.01343 * 359.97438 * 14 13 12 24 24 C 1.36556 * 119.14634 * 0.02562 * 23 14 13 25 25 N 1.32091 * 121.26670 * 359.72554 * 24 23 14 26 26 C 1.47013 * 110.74963 * 301.49750 * 11 10 8 27 27 C 1.53090 * 109.28214 * 58.63008 * 26 11 10 28 28 O 1.42949 * 109.51827 * 58.64572 * 8 7 6 29 29 H 1.09008 * 109.47338 * 174.36224 * 1 2 3 30 30 H 1.09003 * 109.47265 * 54.36730 * 1 2 3 31 31 H 1.08994 * 109.47244 * 294.36112 * 1 2 3 32 32 H 1.08994 * 109.58655 * 353.43986 * 5 4 2 33 33 H 1.09004 * 109.57928 * 113.84623 * 5 4 2 34 34 H 1.08994 * 109.56530 * 185.55236 * 6 5 4 35 35 H 1.09005 * 109.38623 * 65.50276 * 6 5 4 36 36 H 1.08997 * 109.46473 * 301.14435 * 7 6 5 37 37 H 1.09006 * 109.46087 * 181.18406 * 7 6 5 38 38 H 1.09001 * 109.58937 * 246.21455 * 9 4 2 39 39 H 1.09006 * 109.58790 * 6.65258 * 9 4 2 40 40 H 1.08996 * 109.50696 * 56.60096 * 10 8 7 41 41 H 1.09010 * 109.50579 * 176.72865 * 10 8 7 42 42 H 1.07997 * 120.66958 * 0.02562 * 13 12 11 43 43 H 0.97003 * 119.99761 * 180.02562 * 18 17 15 44 44 H 1.08004 * 120.42559 * 180.02562 * 23 14 13 45 45 H 1.08003 * 119.36379 * 179.97438 * 24 23 14 46 46 H 1.09005 * 109.50261 * 298.68890 * 26 11 10 47 47 H 1.09000 * 109.53250 * 178.59664 * 26 11 10 48 48 H 1.08999 * 109.51411 * 183.18038 * 27 26 11 49 49 H 1.09008 * 109.51206 * 63.04455 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4639 -2.4457 -0.1015 6 6 1.8866 -3.3470 1.0572 7 6 3.4112 -3.4804 1.0666 8 6 4.0439 -2.1020 1.2669 9 6 3.6464 -1.1859 0.1061 10 6 5.5673 -2.2392 1.3105 11 7 5.9479 -3.0540 2.4737 12 6 7.3247 -3.2450 2.5195 13 6 8.1594 -2.1656 2.7711 14 6 9.5498 -2.3824 2.8123 15 6 10.4465 -1.3166 3.0644 16 1 10.1627 -0.5194 3.7355 17 6 11.7015 -1.2958 2.4437 18 7 12.0800 -2.3028 1.7005 19 14 12.8350 0.1705 2.6775 20 1 13.1459 0.3307 4.1206 21 1 14.0941 -0.0518 1.9220 22 1 12.1664 1.3979 2.1759 23 6 10.0231 -3.6947 2.5947 24 6 9.1246 -4.6945 2.3543 25 7 7.8255 -4.4569 2.3273 26 6 5.4586 -2.4448 3.7189 27 6 3.9354 -2.3079 3.6503 28 8 3.5826 -1.5389 2.4971 29 1 -0.3634 -1.0228 -0.1010 30 1 -0.3634 0.5987 -0.8353 31 1 -0.3633 0.4239 0.9361 32 1 0.3899 -2.2673 -0.0508 33 1 1.7116 -2.9297 -1.0463 34 1 1.4359 -4.3321 0.9366 35 1 1.5540 -2.9073 1.9976 36 1 3.7451 -3.8988 0.1172 37 1 3.7131 -4.1402 1.8801 38 1 4.0755 -1.5643 -0.8217 39 1 4.0119 -0.1766 0.2955 40 1 5.9155 -2.7227 0.3978 41 1 6.0195 -1.2509 1.3949 42 1 7.7508 -1.1790 2.9320 43 1 12.9495 -2.2885 1.2707 44 1 11.0822 -3.9051 2.6181 45 1 9.4828 -5.6996 2.1869 46 1 5.9073 -1.4591 3.8426 47 1 5.7296 -3.0766 4.5648 48 1 3.5742 -1.8053 4.5475 49 1 3.4837 -3.2976 3.5800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001166330040.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:25 Heat of formation + Delta-G solvation = -26.971868 kcal Electronic energy + Delta-G solvation = -31416.266769 eV Core-core repulsion = 27343.561879 eV Total energy + Delta-G solvation = -4072.704889 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.87683 -39.52749 -38.39232 -36.59451 -35.18291 -33.89064 -32.85774 -32.04382 -30.73664 -30.01292 -29.41579 -27.54271 -25.98667 -25.51449 -25.06754 -23.02558 -22.32816 -21.46362 -20.70274 -19.25437 -19.03605 -17.71913 -17.31187 -16.44139 -16.11937 -15.69452 -15.56255 -15.31291 -15.03968 -14.83946 -14.76017 -14.46543 -14.17469 -13.89249 -13.72966 -13.42771 -13.32060 -13.06180 -12.94770 -12.49754 -12.42355 -12.34988 -12.18424 -11.98435 -11.97564 -11.47141 -11.35758 -11.25759 -11.10925 -11.07241 -10.98276 -10.72151 -10.47607 -10.23423 -10.02339 -9.83221 -9.47833 -9.42948 -8.74726 -8.60726 -8.02659 -7.63137 -7.58301 -6.76618 -4.70402 2.53917 2.58565 2.71783 2.88098 2.99794 3.01955 3.16424 3.73496 3.84095 4.04980 4.45944 4.49369 4.58071 4.73374 4.82361 4.90556 4.93112 5.06130 5.19754 5.21425 5.25359 5.37324 5.41278 5.47811 5.49194 5.58412 5.61096 5.68380 5.69862 5.74132 5.83035 5.86045 6.03921 6.09185 6.09568 6.21407 6.32289 6.35223 6.60860 6.67054 6.80786 6.86327 7.11727 7.23743 7.30012 7.31906 7.35167 7.68301 7.90147 8.10310 8.11140 8.39197 8.67464 8.70677 9.53962 10.09890 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.002840 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.122573 B = 9855.560539 C =10801.184353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.515 3.485 3 O -0.548 6.548 4 N -0.604 5.604 5 C 0.102 3.898 6 C -0.133 4.133 7 C -0.136 4.136 8 C 0.112 3.888 9 C 0.126 3.874 10 C 0.047 3.953 11 N -0.483 5.483 12 C 0.289 3.711 13 C -0.285 4.285 14 C 0.133 3.867 15 C -0.461 4.461 16 H 0.078 0.922 17 C 0.074 3.926 18 N -0.803 5.803 19 Si 0.919 3.081 20 H -0.264 1.264 21 H -0.277 1.277 22 H -0.264 1.264 23 C -0.197 4.197 24 C 0.086 3.914 25 N -0.546 5.546 26 C 0.029 3.971 27 C 0.064 3.936 28 O -0.367 6.367 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.090 0.910 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.100 0.900 40 H 0.084 0.916 41 H 0.049 0.951 42 H 0.098 0.902 43 H 0.282 0.718 44 H 0.135 0.865 45 H 0.124 0.876 46 H 0.048 0.952 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.678 -1.637 -2.492 18.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.304 3.696 3 O -0.425 6.425 4 N -0.337 5.337 5 C -0.021 4.021 6 C -0.171 4.171 7 C -0.174 4.174 8 C 0.072 3.928 9 C 0.003 3.997 10 C -0.082 4.082 11 N -0.205 5.205 12 C 0.062 3.938 13 C -0.311 4.311 14 C 0.125 3.875 15 C -0.493 4.493 16 H 0.096 0.904 17 C -0.143 4.143 18 N -0.429 5.429 19 Si 0.743 3.257 20 H -0.188 1.188 21 H -0.202 1.202 22 H -0.189 1.189 23 C -0.219 4.219 24 C -0.066 4.066 25 N -0.261 5.261 26 C -0.099 4.099 27 C -0.013 4.013 28 O -0.286 6.286 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.112 0.888 32 H 0.108 0.892 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.106 0.894 38 H 0.101 0.899 39 H 0.118 0.882 40 H 0.102 0.898 41 H 0.067 0.933 42 H 0.116 0.884 43 H 0.093 0.907 44 H 0.153 0.847 45 H 0.142 0.858 46 H 0.066 0.934 47 H 0.101 0.899 48 H 0.112 0.888 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -19.059 -2.175 -2.849 19.393 hybrid contribution 1.907 1.726 0.334 2.594 sum -17.152 -0.449 -2.515 17.341 Atomic orbital electron populations 1.22024 0.92155 1.04383 1.05163 1.20708 0.90459 0.83054 0.75354 1.90719 1.70602 1.31081 1.50124 1.47994 1.06907 1.06146 1.72693 1.21846 0.97177 0.83987 0.99069 1.21807 0.96783 0.99430 0.99098 1.21989 0.94312 0.97117 1.04001 1.21796 0.92538 0.93180 0.85335 1.21534 0.79998 1.01967 0.96212 1.22573 0.94012 0.96860 0.94728 1.58751 1.12274 1.47584 1.01916 1.18840 0.86816 0.89571 0.98602 1.22287 0.95371 0.97949 1.15468 1.17775 0.90693 0.92594 0.86485 1.19518 0.98323 1.06606 1.24889 0.90378 1.25923 0.97834 0.97309 0.93233 1.69690 1.20280 1.29381 1.23597 0.86193 0.78760 0.81260 0.79505 1.18843 1.20173 1.18893 1.22272 1.01191 0.92789 1.05635 1.21705 0.88149 0.98291 0.98411 1.66882 1.15230 1.22401 1.21592 1.22742 0.95512 0.98944 0.92718 1.22675 0.93716 0.96419 0.88457 1.88028 1.77481 1.49480 1.13623 0.89936 0.89020 0.88768 0.89170 0.91258 0.90720 0.90968 0.90945 0.89377 0.89879 0.88174 0.89767 0.93305 0.88364 0.90682 0.84705 0.85825 0.93421 0.89894 0.88779 0.92225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.35 10.11 36.01 0.36 -0.98 16 2 C 0.52 6.45 7.80 -10.98 -0.09 6.36 16 3 O -0.55 -9.42 16.53 5.56 0.09 -9.33 16 4 N -0.60 -6.84 2.92 -173.05 -0.51 -7.35 16 5 C 0.10 0.80 6.33 -3.93 -0.02 0.77 16 6 C -0.13 -1.16 5.93 -26.82 -0.16 -1.32 16 7 C -0.14 -1.59 4.23 -26.71 -0.11 -1.70 16 8 C 0.11 1.53 0.70 -90.56 -0.06 1.47 16 9 C 0.13 1.65 5.37 -3.73 -0.02 1.63 16 10 C 0.05 0.79 4.13 -3.74 -0.02 0.77 16 11 N -0.48 -8.96 4.14 -172.99 -0.72 -9.68 16 12 C 0.29 6.53 5.74 -154.98 -0.89 5.64 16 13 C -0.28 -6.87 8.44 -38.43 -0.32 -7.20 16 14 C 0.13 3.48 5.57 -106.56 -0.59 2.88 16 15 C -0.46 -11.98 9.10 -37.65 -0.34 -12.32 16 16 H 0.08 1.96 7.85 -52.49 -0.41 1.55 16 17 C 0.07 1.83 5.44 -17.34 -0.09 1.73 16 18 N -0.80 -20.17 10.66 55.55 0.59 -19.57 16 19 Si 0.92 18.48 29.56 -169.99 -5.03 13.45 16 20 H -0.26 -5.22 7.11 56.52 0.40 -4.82 16 21 H -0.28 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 23 C -0.20 -4.97 8.72 -39.07 -0.34 -5.31 16 24 C 0.09 2.02 11.10 -18.05 -0.20 1.82 16 25 N -0.55 -12.96 10.37 -12.82 -0.13 -13.09 16 26 C 0.03 0.47 5.30 -3.72 -0.02 0.45 16 27 C 0.06 0.85 6.61 37.20 0.25 1.10 16 28 O -0.37 -5.40 9.47 -35.23 -0.33 -5.73 16 29 H 0.08 0.41 5.11 -51.92 -0.27 0.15 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.09 0.49 5.04 -51.93 -0.26 0.22 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.07 0.71 7.61 -51.93 -0.40 0.31 16 36 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.09 1.17 6.18 -51.93 -0.32 0.85 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.10 1.56 7.04 -51.93 -0.37 1.19 16 40 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 41 H 0.05 0.90 7.61 -51.92 -0.40 0.50 16 42 H 0.10 2.31 7.01 -52.49 -0.37 1.94 16 43 H 0.28 6.48 8.29 -40.82 -0.34 6.15 16 44 H 0.14 3.48 6.22 -52.48 -0.33 3.16 16 45 H 0.12 2.54 8.06 -52.48 -0.42 2.12 16 46 H 0.05 0.84 6.99 -51.93 -0.36 0.48 16 47 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 48 H 0.09 1.07 8.14 -51.93 -0.42 0.64 16 49 H 0.06 0.74 6.53 -51.92 -0.34 0.40 16 LS Contribution 378.42 15.07 5.70 5.70 Total: -1.00 -31.26 378.42 -10.18 -41.44 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -7.17 Total: 8.37 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: -2.68 Total: -4.21 kcal Atomic # 7 Polarization: -48.93 SS G_CDS: -0.76 Total: -49.69 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -0.24 Total: -15.06 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -31.26 -10.18 -41.44 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166330040.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.464 kcal (2) G-P(sol) polarization free energy of solvation -31.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds