Wall clock time and date at job start Wed Apr 1 2020 05:45:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21281 * 119.99465 * 2 1 4 4 N 1.34775 * 119.99784 * 180.02562 * 2 1 3 5 5 C 1.46925 * 120.63935 * 4.55662 * 4 2 1 6 6 C 1.52768 * 109.04072 * 233.59036 * 5 4 2 7 7 C 1.53054 * 109.37128 * 305.58399 * 6 5 4 8 8 C 1.52979 * 109.52704 * 61.16785 * 7 6 5 9 9 C 1.46949 * 120.63669 * 184.83796 * 4 2 1 10 10 C 1.53020 * 109.55230 * 178.63108 * 8 7 6 11 11 N 1.47029 * 109.26381 * 296.66141 * 10 8 7 12 12 C 1.39077 * 111.00202 * 177.71595 * 11 10 8 13 13 C 1.38750 * 119.65417 * 67.58937 * 12 11 10 14 14 C 1.40778 * 118.66595 * 180.02562 * 13 12 11 15 15 C 1.41544 * 120.99378 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00272 * 34.40954 * 15 14 13 17 17 C 1.40033 * 119.99889 * 214.41784 * 15 14 13 18 18 N 1.30745 * 119.99837 * 355.53630 * 17 15 14 19 19 Si 1.86802 * 119.99863 * 175.54060 * 17 15 14 20 20 H 1.48494 * 109.47267 * 59.99632 * 19 17 15 21 21 H 1.48507 * 109.47125 * 179.97438 * 19 17 15 22 22 H 1.48502 * 109.47136 * 299.99364 * 19 17 15 23 23 C 1.41193 * 118.01343 * 359.97438 * 14 13 12 24 24 C 1.36556 * 119.14634 * 0.02562 * 23 14 13 25 25 N 1.32091 * 121.26670 * 359.72554 * 24 23 14 26 26 C 1.47013 * 110.74963 * 301.49750 * 11 10 8 27 27 C 1.53090 * 109.28214 * 58.63008 * 26 11 10 28 28 O 1.42949 * 109.51827 * 58.64572 * 8 7 6 29 29 H 1.09008 * 109.47338 * 174.36224 * 1 2 3 30 30 H 1.09003 * 109.47265 * 54.36730 * 1 2 3 31 31 H 1.08994 * 109.47244 * 294.36112 * 1 2 3 32 32 H 1.08994 * 109.58655 * 353.43986 * 5 4 2 33 33 H 1.09004 * 109.57928 * 113.84623 * 5 4 2 34 34 H 1.08994 * 109.56530 * 185.55236 * 6 5 4 35 35 H 1.09005 * 109.38623 * 65.50276 * 6 5 4 36 36 H 1.08997 * 109.46473 * 301.14435 * 7 6 5 37 37 H 1.09006 * 109.46087 * 181.18406 * 7 6 5 38 38 H 1.09001 * 109.58937 * 246.21455 * 9 4 2 39 39 H 1.09006 * 109.58790 * 6.65258 * 9 4 2 40 40 H 1.08996 * 109.50696 * 56.60096 * 10 8 7 41 41 H 1.09010 * 109.50579 * 176.72865 * 10 8 7 42 42 H 1.07997 * 120.66958 * 0.02562 * 13 12 11 43 43 H 0.97003 * 119.99761 * 180.02562 * 18 17 15 44 44 H 1.08004 * 120.42559 * 180.02562 * 23 14 13 45 45 H 1.08003 * 119.36379 * 179.97438 * 24 23 14 46 46 H 1.09005 * 109.50261 * 298.68890 * 26 11 10 47 47 H 1.09000 * 109.53250 * 178.59664 * 26 11 10 48 48 H 1.08999 * 109.51411 * 183.18038 * 27 26 11 49 49 H 1.09008 * 109.51206 * 63.04455 * 27 26 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1809 -1.1672 -0.0005 5 6 1.4639 -2.4457 -0.1015 6 6 1.8866 -3.3470 1.0572 7 6 3.4112 -3.4804 1.0666 8 6 4.0439 -2.1020 1.2669 9 6 3.6464 -1.1859 0.1061 10 6 5.5673 -2.2392 1.3105 11 7 5.9479 -3.0540 2.4737 12 6 7.3247 -3.2450 2.5195 13 6 8.1594 -2.1656 2.7711 14 6 9.5498 -2.3824 2.8123 15 6 10.4465 -1.3166 3.0644 16 1 10.1627 -0.5194 3.7355 17 6 11.7015 -1.2958 2.4437 18 7 12.0800 -2.3028 1.7005 19 14 12.8350 0.1705 2.6775 20 1 13.1459 0.3307 4.1206 21 1 14.0941 -0.0518 1.9220 22 1 12.1664 1.3979 2.1759 23 6 10.0231 -3.6947 2.5947 24 6 9.1246 -4.6945 2.3543 25 7 7.8255 -4.4569 2.3273 26 6 5.4586 -2.4448 3.7189 27 6 3.9354 -2.3079 3.6503 28 8 3.5826 -1.5389 2.4971 29 1 -0.3634 -1.0228 -0.1010 30 1 -0.3634 0.5987 -0.8353 31 1 -0.3633 0.4239 0.9361 32 1 0.3899 -2.2673 -0.0508 33 1 1.7116 -2.9297 -1.0463 34 1 1.4359 -4.3321 0.9366 35 1 1.5540 -2.9073 1.9976 36 1 3.7451 -3.8988 0.1172 37 1 3.7131 -4.1402 1.8801 38 1 4.0755 -1.5643 -0.8217 39 1 4.0119 -0.1766 0.2955 40 1 5.9155 -2.7227 0.3978 41 1 6.0195 -1.2509 1.3949 42 1 7.7508 -1.1790 2.9320 43 1 12.9495 -2.2885 1.2707 44 1 11.0822 -3.9051 2.6181 45 1 9.4828 -5.6996 2.1869 46 1 5.9073 -1.4591 3.8426 47 1 5.7296 -3.0766 4.5648 48 1 3.5742 -1.8053 4.5475 49 1 3.4837 -3.2976 3.5800 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166330040.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:23 Heat of formation + Delta-G solvation = -46.976495 kcal Electronic energy + Delta-G solvation = -31417.134234 eV Core-core repulsion = 27343.561879 eV Total energy + Delta-G solvation = -4073.572355 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.03295 -40.82856 -39.91094 -37.73737 -36.64176 -35.71885 -33.90209 -32.93030 -32.67348 -31.07538 -30.81047 -28.82467 -27.90089 -26.55911 -26.28259 -24.31668 -23.60076 -22.99657 -22.33282 -20.44734 -19.97406 -19.45020 -18.22850 -17.83484 -17.38153 -17.23935 -16.69430 -16.64981 -16.37842 -16.18487 -16.12945 -15.99997 -15.66807 -15.12865 -14.79352 -14.76900 -14.39122 -14.25743 -14.17350 -14.04338 -13.80897 -13.35522 -13.30508 -13.14301 -13.04306 -12.96331 -12.90591 -12.85622 -12.55543 -12.24445 -12.06299 -11.94466 -11.87368 -11.65850 -11.39943 -11.29912 -10.80658 -10.63844 -10.35559 -9.98450 -9.66813 -9.49003 -9.31554 -8.63476 -6.69907 0.66691 0.86676 1.33472 1.44675 1.48732 1.63357 2.00399 2.13832 2.52205 2.66730 2.69096 3.47021 3.63369 3.65614 3.74474 3.88066 3.95974 4.01218 4.11193 4.14872 4.16242 4.27730 4.34987 4.43570 4.46165 4.51289 4.61341 4.65584 4.66889 4.70185 4.76419 4.78724 4.83212 4.85732 4.87814 4.95666 5.01857 5.07240 5.18095 5.19378 5.34280 5.38253 5.41408 5.49238 5.78451 5.81870 5.97085 6.17802 6.23926 6.45469 6.47012 6.72932 6.75656 7.19472 7.63787 8.24203 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.002840 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.122573 B = 9855.560539 C =10801.184353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.503 3.497 3 O -0.608 6.608 4 N -0.602 5.602 5 C 0.097 3.903 6 C -0.125 4.125 7 C -0.132 4.132 8 C 0.122 3.878 9 C 0.126 3.874 10 C 0.048 3.952 11 N -0.478 5.478 12 C 0.298 3.702 13 C -0.300 4.300 14 C 0.107 3.893 15 C -0.495 4.495 16 H 0.075 0.925 17 C 0.035 3.965 18 N -0.826 5.826 19 Si 0.990 3.010 20 H -0.257 1.257 21 H -0.263 1.263 22 H -0.265 1.265 23 C -0.217 4.217 24 C 0.090 3.910 25 N -0.555 5.555 26 C 0.027 3.973 27 C 0.073 3.927 28 O -0.379 6.379 29 H 0.115 0.885 30 H 0.102 0.898 31 H 0.100 0.900 32 H 0.125 0.875 33 H 0.087 0.913 34 H 0.104 0.896 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.073 0.927 38 H 0.095 0.905 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.022 0.978 42 H 0.093 0.907 43 H 0.291 0.709 44 H 0.126 0.874 45 H 0.155 0.845 46 H 0.028 0.972 47 H 0.083 0.917 48 H 0.119 0.881 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.119 -2.655 -2.928 21.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.295 3.705 3 O -0.490 6.490 4 N -0.334 5.334 5 C -0.024 4.024 6 C -0.163 4.163 7 C -0.170 4.170 8 C 0.081 3.919 9 C 0.002 3.998 10 C -0.080 4.080 11 N -0.201 5.201 12 C 0.070 3.930 13 C -0.326 4.326 14 C 0.099 3.901 15 C -0.527 4.527 16 H 0.093 0.907 17 C -0.180 4.180 18 N -0.453 5.453 19 Si 0.810 3.190 20 H -0.181 1.181 21 H -0.187 1.187 22 H -0.190 1.190 23 C -0.239 4.239 24 C -0.061 4.061 25 N -0.270 5.270 26 C -0.101 4.101 27 C -0.004 4.004 28 O -0.298 6.298 29 H 0.133 0.867 30 H 0.120 0.880 31 H 0.119 0.881 32 H 0.142 0.858 33 H 0.105 0.895 34 H 0.122 0.878 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.092 0.908 38 H 0.113 0.887 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.040 0.960 42 H 0.111 0.889 43 H 0.102 0.898 44 H 0.143 0.857 45 H 0.172 0.828 46 H 0.046 0.954 47 H 0.101 0.899 48 H 0.137 0.863 49 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.538 -3.245 -3.284 22.027 hybrid contribution 2.659 1.987 0.462 3.352 sum -18.879 -1.257 -2.822 19.130 Atomic orbital electron populations 1.22049 0.87831 1.06802 1.05934 1.21709 0.92516 0.82313 0.74008 1.90692 1.72157 1.33260 1.52915 1.48155 1.05980 1.07545 1.71710 1.22187 0.98686 0.81990 0.99523 1.21790 0.94117 1.01193 0.99205 1.21952 0.96683 0.94719 1.03653 1.21742 0.89983 0.94892 0.85290 1.21369 0.81985 0.99922 0.96500 1.22616 0.96744 0.94907 0.93750 1.58927 1.09613 1.48188 1.03347 1.19168 0.88550 0.88846 0.96438 1.22335 0.95209 0.98389 1.16621 1.18150 0.91658 0.93321 0.87017 1.19781 0.99787 1.06969 1.26124 0.90709 1.26795 0.98689 1.00147 0.92350 1.69739 1.21030 1.30899 1.23620 0.85124 0.76825 0.77194 0.79828 1.18087 1.18662 1.18966 1.22233 1.01058 0.93073 1.07569 1.22128 0.87921 0.99236 0.96859 1.67040 1.15266 1.22614 1.22115 1.22860 0.97934 0.97593 0.91708 1.22753 0.90978 0.97642 0.88987 1.88028 1.77190 1.50355 1.14206 0.86659 0.87986 0.88123 0.85783 0.89513 0.87780 0.91591 0.90446 0.90789 0.88664 0.91578 0.90395 0.95969 0.88914 0.89796 0.85650 0.82826 0.95400 0.89893 0.86328 0.90493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.00 10.11 71.24 0.72 -1.28 16 2 C 0.50 12.03 7.80 87.66 0.68 12.71 16 3 O -0.61 -21.53 16.53 -3.03 -0.05 -21.58 16 4 N -0.60 -12.61 2.92 -819.79 -2.39 -15.01 16 5 C 0.10 1.12 6.33 86.22 0.55 1.66 16 6 C -0.13 -1.70 5.93 30.54 0.18 -1.52 16 7 C -0.13 -2.80 4.23 30.61 0.13 -2.67 16 8 C 0.12 3.30 0.70 -10.75 -0.01 3.29 16 9 C 0.13 3.35 5.37 86.34 0.46 3.81 16 10 C 0.05 1.68 4.13 86.29 0.36 2.04 16 11 N -0.48 -18.10 4.14 -701.21 -2.90 -21.00 16 12 C 0.30 13.84 5.74 132.91 0.76 14.60 16 13 C -0.30 -15.22 8.44 23.01 0.19 -15.03 16 14 C 0.11 5.85 5.57 -21.12 -0.12 5.73 16 15 C -0.50 -26.79 9.10 23.52 0.21 -26.58 16 16 H 0.07 3.94 7.85 -2.91 -0.02 3.91 16 17 C 0.04 1.77 5.44 85.29 0.46 2.23 16 18 N -0.83 -42.27 10.66 21.84 0.23 -42.04 16 19 Si 0.99 38.12 29.56 68.60 2.03 40.15 16 20 H -0.26 -9.54 7.11 99.48 0.71 -8.83 16 21 H -0.26 -9.44 7.11 99.48 0.71 -8.73 16 22 H -0.27 -10.17 7.11 99.48 0.71 -9.47 16 23 C -0.22 -11.34 8.72 22.60 0.20 -11.14 16 24 C 0.09 4.27 11.10 84.26 0.94 5.20 16 25 N -0.55 -26.56 10.37 -194.47 -2.02 -28.57 16 26 C 0.03 0.89 5.30 86.31 0.46 1.35 16 27 C 0.07 1.85 6.61 72.01 0.48 2.33 16 28 O -0.38 -10.92 9.47 -148.98 -1.41 -12.33 16 29 H 0.12 0.55 5.11 -2.38 -0.01 0.54 16 30 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 31 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.12 0.62 5.04 -2.39 -0.01 0.61 16 33 H 0.09 0.79 8.14 -2.38 -0.02 0.77 16 34 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.07 1.03 7.61 -2.38 -0.02 1.01 16 36 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.07 1.81 6.18 -2.38 -0.01 1.79 16 38 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 39 H 0.07 2.21 7.04 -2.38 -0.02 2.19 16 40 H 0.08 2.77 8.14 -2.39 -0.02 2.75 16 41 H 0.02 0.88 7.61 -2.38 -0.02 0.86 16 42 H 0.09 4.68 7.01 -2.91 -0.02 4.66 16 43 H 0.29 13.44 8.29 -92.71 -0.77 12.68 16 44 H 0.13 6.71 6.22 -2.91 -0.02 6.69 16 45 H 0.15 6.20 8.06 -2.91 -0.02 6.17 16 46 H 0.03 1.03 6.99 -2.38 -0.02 1.02 16 47 H 0.08 2.74 8.14 -2.39 -0.02 2.72 16 48 H 0.12 2.45 8.14 -2.39 -0.02 2.44 16 49 H 0.08 1.73 6.53 -2.38 -0.02 1.72 16 Total: -1.00 -72.48 378.42 1.11 -71.36 By element: Atomic # 1 Polarization: 31.32 SS G_CDS: 0.97 Total: 32.29 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 6.66 Total: -3.27 kcal Atomic # 7 Polarization: -99.54 SS G_CDS: -7.08 Total: -106.62 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -1.46 Total: -33.91 kcal Atomic # 14 Polarization: 38.12 SS G_CDS: 2.03 Total: 40.15 kcal Total: -72.48 1.11 -71.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166330040.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.388 kcal (2) G-P(sol) polarization free energy of solvation -72.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.976 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds