Wall clock time and date at job start Wed Apr 1 2020 05:14:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46829 * 2 1 4 4 C 1.34780 * 119.99509 * 180.02562 * 3 2 1 5 5 O 1.21276 * 120.00341 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99519 * 179.97438 * 4 3 2 7 7 C 1.50701 * 109.46692 * 180.02562 * 6 4 3 8 8 O 1.21283 * 120.00254 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99748 * 180.02562 * 7 6 4 10 10 C 1.46498 * 119.99998 * 179.97438 * 9 7 6 11 11 H 1.09006 * 110.64409 * 36.68541 * 10 9 7 12 12 C 1.54322 * 110.72056 * 273.54209 * 10 9 7 13 13 N 1.47023 * 107.27149 * 219.26364 * 12 10 9 14 14 C 1.36940 * 125.64499 * 178.91861 * 13 12 10 15 15 H 1.08007 * 119.99920 * 180.02562 * 14 13 12 16 16 C 1.38810 * 120.00289 * 0.02562 * 14 13 12 17 17 N 1.31618 * 120.00172 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00077 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46711 * 90.00433 * 18 16 14 20 20 H 1.48498 * 109.47327 * 210.00619 * 18 16 14 21 21 H 1.48500 * 109.47037 * 330.00692 * 18 16 14 22 22 C 1.47419 * 108.70585 * 358.94325 * 13 12 10 23 23 C 1.54905 * 104.92834 * 24.07052 * 22 13 12 24 24 H 1.09001 * 111.00720 * 81.12130 * 23 22 13 25 25 C 1.50701 * 111.00535 * 204.97599 * 23 22 13 26 26 C 1.38226 * 120.00183 * 58.27251 * 25 23 22 27 27 C 1.38244 * 120.00006 * 179.79177 * 26 25 23 28 28 C 1.38234 * 119.99643 * 0.45680 * 27 26 25 29 29 C 1.38234 * 120.00319 * 359.77394 * 28 27 26 30 30 C 1.38233 * 119.99737 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.47209 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47189 * 300.00345 * 1 2 3 33 33 H 1.08999 * 109.47235 * 59.99661 * 1 2 3 34 34 H 1.08991 * 109.47121 * 240.00035 * 2 1 3 35 35 H 1.08997 * 109.46976 * 119.99609 * 2 1 3 36 36 H 0.96995 * 120.00336 * 0.02562 * 3 2 1 37 37 H 1.08999 * 109.47018 * 59.99799 * 6 4 3 38 38 H 1.08997 * 109.47038 * 299.99540 * 6 4 3 39 39 H 0.96997 * 120.00122 * 359.97438 * 9 7 6 40 40 H 1.09009 * 109.88484 * 99.84947 * 12 10 9 41 41 H 1.09003 * 110.01148 * 338.75884 * 12 10 9 42 42 H 0.96996 * 120.00363 * 180.02562 * 17 16 14 43 43 H 1.09002 * 110.36926 * 142.96521 * 22 13 12 44 44 H 1.08995 * 110.36556 * 265.17805 * 22 13 12 45 45 H 1.07998 * 120.00075 * 359.97438 * 26 25 23 46 46 H 1.08001 * 119.99847 * 180.25104 * 27 26 25 47 47 H 1.07999 * 119.99448 * 179.78706 * 28 27 26 48 48 H 1.08001 * 120.00333 * 179.97438 * 29 28 27 49 49 H 1.08001 * 119.99578 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8457 3.0484 -0.0011 7 6 5.3527 3.0484 -0.0023 8 8 5.9591 1.9980 -0.0021 9 7 6.0265 4.2156 -0.0024 10 6 7.4915 4.2156 -0.0030 11 1 7.8756 3.3976 -0.6126 12 6 8.0381 4.1263 1.4375 13 7 9.2092 5.0117 1.5156 14 6 9.9695 5.2325 2.6330 15 1 10.8136 5.9049 2.5876 16 6 9.6556 4.5921 3.8239 17 7 8.6274 3.7723 3.8791 18 14 10.6933 4.8928 5.3478 19 1 10.1365 6.0412 6.1070 20 1 10.6787 3.6796 6.2039 21 1 12.0896 5.1968 4.9438 22 6 9.4290 5.6229 0.1922 23 6 8.0456 5.5772 -0.5031 24 1 7.4138 6.4010 -0.1708 25 6 8.1943 5.5845 -2.0028 26 6 8.9228 4.5912 -2.6299 27 6 9.0556 4.5955 -4.0059 28 6 8.4676 5.5983 -4.7539 29 6 7.7430 6.5943 -4.1263 30 6 7.6068 6.5877 -2.7507 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.3880 2.1185 0.0004 37 1 3.4826 3.5625 0.8888 38 1 3.4821 3.5619 -0.8911 39 1 5.5415 5.0556 -0.0022 40 1 8.3333 3.1006 1.6591 41 1 7.2774 4.4542 2.1460 42 1 8.4078 3.3252 4.7113 43 1 9.7648 6.6541 0.3016 44 1 10.1583 5.0454 -0.3758 45 1 9.3859 3.8102 -2.0452 46 1 9.6215 3.8171 -4.4962 47 1 8.5743 5.6035 -5.8286 48 1 7.2840 7.3781 -4.7107 49 1 7.0410 7.3661 -2.2604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001264444530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:25 Heat of formation + Delta-G solvation = -17.591713 kcal Electronic energy + Delta-G solvation = -30321.562172 eV Core-core repulsion = 26249.264036 eV Total energy + Delta-G solvation = -4072.298135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.16392 -39.51149 -38.42484 -36.96921 -35.23519 -33.77388 -32.69357 -31.54320 -30.94033 -30.70889 -29.71112 -27.87695 -26.90894 -24.54413 -23.30457 -22.66381 -21.99100 -21.18008 -20.34204 -19.78232 -19.48161 -17.27300 -17.09206 -16.63024 -16.53549 -15.97244 -15.62528 -15.52389 -15.05444 -14.90524 -14.68052 -14.40450 -13.85249 -13.63285 -13.51258 -13.26334 -13.19224 -12.90890 -12.73523 -12.56399 -12.41273 -12.21818 -12.08152 -12.07230 -11.86742 -11.57807 -11.17875 -11.08449 -11.01195 -10.90957 -10.75176 -10.35889 -10.06118 -9.93948 -9.89007 -9.72898 -9.11684 -9.08277 -8.77340 -8.62516 -8.58938 -8.24993 -6.82511 -5.66898 -3.02882 1.51853 1.55723 2.72890 2.93415 3.14375 3.42117 3.47218 3.49981 3.71491 3.93491 4.51065 4.58916 4.77534 4.83824 4.90731 5.00269 5.02106 5.08059 5.11705 5.21608 5.24592 5.27955 5.38098 5.50793 5.56929 5.61741 5.65062 5.67913 5.74221 5.78738 5.79828 5.82874 6.17206 6.18725 6.25860 6.35988 6.36495 6.56497 6.60299 6.67352 6.75133 6.84299 6.99625 7.16808 7.42201 7.59680 7.61852 7.87958 7.98425 8.27173 8.31343 8.75874 9.23096 9.83517 10.47672 11.43229 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006490 B = 0.003846 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4313.362520 B = 7278.893015 C =10985.763303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.115 3.885 3 N -0.741 5.741 4 C 0.510 3.490 5 O -0.487 6.487 6 C -0.165 4.165 7 C 0.511 3.489 8 O -0.493 6.493 9 N -0.717 5.717 10 C 0.131 3.869 11 H 0.088 0.912 12 C 0.172 3.828 13 N -0.604 5.604 14 C -0.232 4.232 15 H 0.079 0.921 16 C -0.006 4.006 17 N -0.917 5.917 18 Si 0.912 3.088 19 H -0.289 1.289 20 H -0.290 1.290 21 H -0.281 1.281 22 C 0.148 3.852 23 C -0.074 4.074 24 H 0.086 0.914 25 C -0.056 4.056 26 C -0.110 4.110 27 C -0.118 4.118 28 C -0.133 4.133 29 C -0.123 4.123 30 C -0.120 4.120 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.060 0.940 34 H 0.065 0.935 35 H 0.066 0.934 36 H 0.397 0.603 37 H 0.120 0.880 38 H 0.116 0.884 39 H 0.393 0.607 40 H 0.050 0.950 41 H 0.052 0.948 42 H 0.253 0.747 43 H 0.044 0.956 44 H 0.025 0.975 45 H 0.124 0.876 46 H 0.118 0.882 47 H 0.115 0.885 48 H 0.116 0.884 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.527 3.068 -14.597 21.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.009 4.009 3 N -0.397 5.397 4 C 0.294 3.706 5 O -0.358 6.358 6 C -0.208 4.208 7 C 0.294 3.706 8 O -0.365 6.365 9 N -0.369 5.369 10 C 0.026 3.974 11 H 0.106 0.894 12 C 0.047 3.953 13 N -0.331 5.331 14 C -0.360 4.360 15 H 0.097 0.903 16 C -0.203 4.203 17 N -0.563 5.563 18 Si 0.742 3.258 19 H -0.217 1.217 20 H -0.217 1.217 21 H -0.207 1.207 22 C 0.021 3.979 23 C -0.094 4.094 24 H 0.104 0.896 25 C -0.057 4.057 26 C -0.128 4.128 27 C -0.136 4.136 28 C -0.151 4.151 29 C -0.141 4.141 30 C -0.138 4.138 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.079 0.921 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.231 0.769 37 H 0.138 0.862 38 H 0.134 0.866 39 H 0.226 0.774 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.062 0.938 44 H 0.043 0.957 45 H 0.142 0.858 46 H 0.136 0.864 47 H 0.133 0.867 48 H 0.134 0.866 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.443 1.460 -14.350 20.412 hybrid contribution -0.194 1.021 0.874 1.358 sum -14.637 2.481 -13.476 20.050 Atomic orbital electron populations 1.21997 0.94618 1.03112 1.02379 1.21242 0.93912 0.83235 1.02472 1.46047 1.06992 1.08667 1.77954 1.20085 0.82140 0.91058 0.77303 1.90885 1.54301 1.45454 1.45156 1.21589 0.96190 0.96777 1.06222 1.19770 0.88506 0.84428 0.77936 1.90869 1.69110 1.30395 1.46080 1.45832 1.07253 1.07750 1.76057 1.22483 0.78455 0.96134 1.00315 0.89418 1.21522 0.89352 0.95546 0.88920 1.44416 1.32429 1.50856 1.05373 1.19030 1.07638 1.22771 0.86556 0.90307 1.24831 0.98364 0.99191 0.97913 1.69971 1.28498 1.32083 1.25788 0.86128 0.79557 0.77078 0.83028 1.21650 1.21668 1.20676 1.21574 0.91994 0.97122 0.87224 1.21687 1.00014 0.97951 0.89792 0.89554 1.19816 0.96310 0.94492 0.95076 1.21130 0.98518 0.98654 0.94491 1.21123 0.99872 0.98575 0.94055 1.21055 0.99101 0.95500 0.99445 1.21047 0.99668 0.98748 0.94639 1.21024 1.00474 0.98473 0.93791 0.90920 0.91989 0.92091 0.91659 0.91539 0.76939 0.86217 0.86566 0.77372 0.93146 0.92989 0.93682 0.93763 0.95723 0.85769 0.86374 0.86665 0.86565 0.86327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 10.03 37.16 0.37 -0.54 16 2 C 0.11 1.05 6.39 -4.04 -0.03 1.03 16 3 N -0.74 -7.05 5.56 -60.29 -0.33 -7.38 16 4 C 0.51 7.16 7.82 -10.98 -0.09 7.07 16 5 O -0.49 -9.78 14.18 -18.96 -0.27 -10.05 16 6 C -0.16 -1.87 6.19 -29.03 -0.18 -2.05 16 7 C 0.51 8.81 7.82 -10.99 -0.09 8.72 16 8 O -0.49 -11.36 13.90 -18.96 -0.26 -11.62 16 9 N -0.72 -11.36 5.14 -51.96 -0.27 -11.63 16 10 C 0.13 2.52 2.64 -66.03 -0.17 2.34 16 11 H 0.09 1.84 6.34 -51.93 -0.33 1.51 16 12 C 0.17 4.29 5.12 -3.06 -0.02 4.27 16 13 N -0.60 -15.39 3.40 -170.07 -0.58 -15.96 16 14 C -0.23 -6.48 10.28 -15.06 -0.15 -6.63 16 15 H 0.08 2.11 7.83 -52.48 -0.41 1.70 16 16 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 17 N -0.92 -27.61 10.31 55.49 0.57 -27.03 16 18 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 C 0.15 3.00 6.65 -2.53 -0.02 2.98 16 23 C -0.07 -1.25 2.88 -89.56 -0.26 -1.50 16 24 H 0.09 1.34 7.84 -51.93 -0.41 0.93 16 25 C -0.06 -0.83 5.00 -104.63 -0.52 -1.36 16 26 C -0.11 -1.65 8.28 -39.58 -0.33 -1.98 16 27 C -0.12 -1.53 10.05 -39.58 -0.40 -1.93 16 28 C -0.13 -1.54 10.05 -39.58 -0.40 -1.94 16 29 C -0.12 -1.40 10.05 -39.58 -0.40 -1.80 16 30 C -0.12 -1.50 9.69 -39.58 -0.38 -1.88 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.40 2.31 8.47 -40.82 -0.35 1.97 16 37 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.39 4.78 8.53 -40.82 -0.35 4.43 16 40 H 0.05 1.49 7.51 -51.92 -0.39 1.10 16 41 H 0.05 1.41 7.26 -51.93 -0.38 1.04 16 42 H 0.25 7.46 8.31 -40.82 -0.34 7.12 16 43 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 44 H 0.03 0.51 7.05 -51.93 -0.37 0.14 16 45 H 0.12 1.98 7.02 -52.49 -0.37 1.62 16 46 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 47 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 48 H 0.12 1.03 8.06 -52.49 -0.42 0.61 16 49 H 0.12 1.26 7.99 -52.49 -0.42 0.84 16 LS Contribution 401.22 15.07 6.05 6.05 Total: -1.00 -38.46 401.22 -10.81 -49.27 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -7.55 Total: 6.45 kcal Atomic # 6 Polarization: 7.69 SS G_CDS: -3.15 Total: 4.54 kcal Atomic # 7 Polarization: -61.40 SS G_CDS: -0.61 Total: -62.01 kcal Atomic # 8 Polarization: -21.13 SS G_CDS: -0.53 Total: -21.67 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.46 -10.81 -49.27 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264444530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.679 kcal (2) G-P(sol) polarization free energy of solvation -38.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.271 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds