Wall clock time and date at job start Wed Apr 1 2020 05:14:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.46829 * 2 1 4 4 C 1.34780 * 119.99509 * 180.02562 * 3 2 1 5 5 O 1.21276 * 120.00341 * 359.97438 * 4 3 2 6 6 C 1.50707 * 119.99519 * 179.97438 * 4 3 2 7 7 C 1.50701 * 109.46692 * 180.02562 * 6 4 3 8 8 O 1.21283 * 120.00254 * 359.97438 * 7 6 4 9 9 N 1.34774 * 119.99748 * 180.02562 * 7 6 4 10 10 C 1.46498 * 119.99998 * 179.97438 * 9 7 6 11 11 H 1.09006 * 110.64409 * 36.68541 * 10 9 7 12 12 C 1.54322 * 110.72056 * 273.54209 * 10 9 7 13 13 N 1.47023 * 107.27149 * 219.26364 * 12 10 9 14 14 C 1.36940 * 125.64499 * 178.91861 * 13 12 10 15 15 H 1.08007 * 119.99920 * 180.02562 * 14 13 12 16 16 C 1.38810 * 120.00289 * 0.02562 * 14 13 12 17 17 N 1.31618 * 120.00172 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00077 * 179.97438 * 16 14 13 19 19 H 1.48503 * 109.46711 * 90.00433 * 18 16 14 20 20 H 1.48498 * 109.47327 * 210.00619 * 18 16 14 21 21 H 1.48500 * 109.47037 * 330.00692 * 18 16 14 22 22 C 1.47419 * 108.70585 * 358.94325 * 13 12 10 23 23 C 1.54905 * 104.92834 * 24.07052 * 22 13 12 24 24 H 1.09001 * 111.00720 * 81.12130 * 23 22 13 25 25 C 1.50701 * 111.00535 * 204.97599 * 23 22 13 26 26 C 1.38226 * 120.00183 * 58.27251 * 25 23 22 27 27 C 1.38244 * 120.00006 * 179.79177 * 26 25 23 28 28 C 1.38234 * 119.99643 * 0.45680 * 27 26 25 29 29 C 1.38234 * 120.00319 * 359.77394 * 28 27 26 30 30 C 1.38233 * 119.99737 * 0.02562 * 29 28 27 31 31 H 1.09003 * 109.47209 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47189 * 300.00345 * 1 2 3 33 33 H 1.08999 * 109.47235 * 59.99661 * 1 2 3 34 34 H 1.08991 * 109.47121 * 240.00035 * 2 1 3 35 35 H 1.08997 * 109.46976 * 119.99609 * 2 1 3 36 36 H 0.96995 * 120.00336 * 0.02562 * 3 2 1 37 37 H 1.08999 * 109.47018 * 59.99799 * 6 4 3 38 38 H 1.08997 * 109.47038 * 299.99540 * 6 4 3 39 39 H 0.96997 * 120.00122 * 359.97438 * 9 7 6 40 40 H 1.09009 * 109.88484 * 99.84947 * 12 10 9 41 41 H 1.09003 * 110.01148 * 338.75884 * 12 10 9 42 42 H 0.96996 * 120.00363 * 180.02562 * 17 16 14 43 43 H 1.09002 * 110.36926 * 142.96521 * 22 13 12 44 44 H 1.08995 * 110.36556 * 265.17805 * 22 13 12 45 45 H 1.07998 * 120.00075 * 359.97438 * 26 25 23 46 46 H 1.08001 * 119.99847 * 180.25104 * 27 26 25 47 47 H 1.07999 * 119.99448 * 179.78706 * 28 27 26 48 48 H 1.08001 * 120.00333 * 179.97438 * 29 28 27 49 49 H 1.08001 * 119.99578 * 179.97438 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 3.3434 1.6275 -0.0005 5 8 4.1315 0.7057 -0.0005 6 6 3.8457 3.0484 -0.0011 7 6 5.3527 3.0484 -0.0023 8 8 5.9591 1.9980 -0.0021 9 7 6.0265 4.2156 -0.0024 10 6 7.4915 4.2156 -0.0030 11 1 7.8756 3.3976 -0.6126 12 6 8.0381 4.1263 1.4375 13 7 9.2092 5.0117 1.5156 14 6 9.9695 5.2325 2.6330 15 1 10.8136 5.9049 2.5876 16 6 9.6556 4.5921 3.8239 17 7 8.6274 3.7723 3.8791 18 14 10.6933 4.8928 5.3478 19 1 10.1365 6.0412 6.1070 20 1 10.6787 3.6796 6.2039 21 1 12.0896 5.1968 4.9438 22 6 9.4290 5.6229 0.1922 23 6 8.0456 5.5772 -0.5031 24 1 7.4138 6.4010 -0.1708 25 6 8.1943 5.5845 -2.0028 26 6 8.9228 4.5912 -2.6299 27 6 9.0556 4.5955 -4.0059 28 6 8.4676 5.5983 -4.7539 29 6 7.7430 6.5943 -4.1263 30 6 7.6068 6.5877 -2.7507 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8899 34 1 1.8933 -0.5138 -0.8899 35 1 1.8933 -0.5138 0.8900 36 1 1.3880 2.1185 0.0004 37 1 3.4826 3.5625 0.8888 38 1 3.4821 3.5619 -0.8911 39 1 5.5415 5.0556 -0.0022 40 1 8.3333 3.1006 1.6591 41 1 7.2774 4.4542 2.1460 42 1 8.4078 3.3252 4.7113 43 1 9.7648 6.6541 0.3016 44 1 10.1583 5.0454 -0.3758 45 1 9.3859 3.8102 -2.0452 46 1 9.6215 3.8171 -4.4962 47 1 8.5743 5.6035 -5.8286 48 1 7.2840 7.3781 -4.7107 49 1 7.0410 7.3661 -2.2604 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001264444530.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:23 Heat of formation + Delta-G solvation = -45.437514 kcal Electronic energy + Delta-G solvation = -30322.769656 eV Core-core repulsion = 26249.264036 eV Total energy + Delta-G solvation = -4073.505620 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.45767 -40.69743 -39.63249 -38.51413 -36.21881 -35.50996 -34.27705 -32.57903 -32.53135 -31.72100 -30.72808 -29.40802 -28.53958 -26.41498 -24.16204 -23.78357 -23.09049 -22.62159 -21.69546 -21.30161 -20.80664 -18.96196 -18.42509 -17.90508 -17.72259 -17.03514 -16.84823 -16.79719 -16.60794 -16.02909 -15.86912 -15.60896 -15.38370 -15.12799 -14.71239 -14.43636 -14.38115 -14.21423 -14.06380 -13.85605 -13.80642 -13.60443 -13.25738 -13.06824 -12.94991 -12.74763 -12.66664 -12.59473 -12.49384 -12.32183 -12.12258 -11.99875 -11.88344 -11.62709 -11.50615 -11.15844 -10.76822 -10.46513 -10.05457 -10.02676 -9.73792 -9.48827 -8.95152 -7.85409 -5.24582 0.49929 0.57958 1.43236 1.46654 1.55265 1.66609 1.79772 1.91317 2.46148 2.57381 2.91272 3.32207 3.48926 3.61787 3.75992 3.93752 4.00129 4.05351 4.19819 4.22217 4.22705 4.26123 4.31010 4.36012 4.42768 4.45862 4.53817 4.57732 4.59998 4.73165 4.81968 4.92253 4.97876 5.07694 5.15866 5.20680 5.25182 5.28005 5.32655 5.43372 5.52151 5.62434 5.65348 5.69250 5.74139 5.85915 6.13740 6.20096 6.61261 6.70118 7.04289 7.34532 7.49453 7.72907 8.36491 9.23092 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.006490 B = 0.003846 C = 0.002548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4313.362520 B = 7278.893015 C =10985.763303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.109 3.891 3 N -0.717 5.717 4 C 0.501 3.499 5 O -0.561 6.561 6 C -0.148 4.148 7 C 0.499 3.501 8 O -0.561 6.561 9 N -0.701 5.701 10 C 0.148 3.852 11 H 0.062 0.938 12 C 0.191 3.809 13 N -0.624 5.624 14 C -0.242 4.242 15 H 0.089 0.911 16 C -0.069 4.069 17 N -0.952 5.952 18 Si 0.981 3.019 19 H -0.279 1.279 20 H -0.300 1.300 21 H -0.267 1.267 22 C 0.141 3.859 23 C -0.047 4.047 24 H 0.109 0.891 25 C -0.074 4.074 26 C -0.134 4.134 27 C -0.129 4.129 28 C -0.127 4.127 29 C -0.118 4.118 30 C -0.114 4.114 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.050 0.950 35 H 0.044 0.956 36 H 0.420 0.580 37 H 0.158 0.842 38 H 0.171 0.829 39 H 0.416 0.584 40 H -0.016 1.016 41 H 0.024 0.976 42 H 0.244 0.756 43 H 0.058 0.942 44 H 0.019 0.981 45 H 0.095 0.905 46 H 0.129 0.871 47 H 0.145 0.855 48 H 0.152 0.848 49 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.020 6.866 -16.929 25.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.015 4.015 3 N -0.373 5.373 4 C 0.287 3.713 5 O -0.438 6.438 6 C -0.190 4.190 7 C 0.285 3.715 8 O -0.437 6.437 9 N -0.355 5.355 10 C 0.041 3.959 11 H 0.080 0.920 12 C 0.064 3.936 13 N -0.350 5.350 14 C -0.371 4.371 15 H 0.107 0.893 16 C -0.261 4.261 17 N -0.600 5.600 18 Si 0.809 3.191 19 H -0.205 1.205 20 H -0.227 1.227 21 H -0.192 1.192 22 C 0.016 3.984 23 C -0.066 4.066 24 H 0.128 0.872 25 C -0.074 4.074 26 C -0.152 4.152 27 C -0.147 4.147 28 C -0.145 4.145 29 C -0.135 4.135 30 C -0.131 4.131 31 H 0.099 0.901 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.258 0.742 37 H 0.175 0.825 38 H 0.188 0.812 39 H 0.254 0.746 40 H 0.002 0.998 41 H 0.042 0.958 42 H 0.053 0.947 43 H 0.076 0.924 44 H 0.037 0.963 45 H 0.113 0.887 46 H 0.147 0.853 47 H 0.163 0.837 48 H 0.170 0.830 49 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -17.010 5.363 -16.725 24.450 hybrid contribution 0.605 -0.183 1.486 1.615 sum -16.405 5.180 -15.239 22.982 Atomic orbital electron populations 1.21930 0.91167 1.04131 1.03626 1.21328 0.96585 0.82754 1.00802 1.45869 1.05958 1.09745 1.75684 1.20652 0.82941 0.91494 0.76236 1.90874 1.56405 1.47643 1.48836 1.21623 0.91016 0.95912 1.10458 1.20906 0.91147 0.83401 0.76029 1.90858 1.71065 1.32861 1.48927 1.45636 1.05718 1.08908 1.75208 1.21917 0.80648 0.97320 0.95981 0.92015 1.21107 0.88728 0.91730 0.92012 1.44703 1.32318 1.51271 1.06747 1.19498 1.07952 1.22202 0.87447 0.89337 1.25745 0.99835 0.99352 1.01218 1.70249 1.30495 1.33465 1.25835 0.85036 0.78525 0.76572 0.78939 1.20540 1.22687 1.19192 1.21766 0.94486 0.97043 0.85127 1.21440 0.97381 0.96445 0.91373 0.87247 1.19606 0.98314 0.96024 0.93482 1.21083 0.99799 0.98732 0.95627 1.21319 1.00433 0.99747 0.93209 1.21459 0.97638 0.94447 1.00933 1.21476 0.98633 0.99091 0.94329 1.21291 0.99605 0.97811 0.94430 0.90115 0.90927 0.90507 0.93109 0.93739 0.74225 0.82462 0.81176 0.74613 0.99757 0.95771 0.94691 0.92411 0.96339 0.88685 0.85331 0.83699 0.82997 0.83670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 10.03 71.98 0.72 -0.63 16 2 C 0.11 1.98 6.39 86.38 0.55 2.53 16 3 N -0.72 -12.54 5.56 -463.06 -2.57 -15.11 16 4 C 0.50 13.98 7.82 87.66 0.69 14.66 16 5 O -0.56 -24.03 14.18 20.42 0.29 -23.74 16 6 C -0.15 -3.03 6.19 29.10 0.18 -2.85 16 7 C 0.50 17.59 7.82 87.66 0.69 18.27 16 8 O -0.56 -27.95 13.90 20.40 0.28 -27.67 16 9 N -0.70 -22.22 5.14 -436.71 -2.24 -24.46 16 10 C 0.15 5.99 2.64 46.22 0.12 6.11 16 11 H 0.06 2.85 6.34 -2.38 -0.02 2.83 16 12 C 0.19 10.22 5.12 86.73 0.44 10.67 16 13 N -0.62 -33.30 3.40 -691.99 -2.35 -35.65 16 14 C -0.24 -13.98 10.28 84.03 0.86 -13.11 16 15 H 0.09 4.80 7.83 -2.91 -0.02 4.78 16 16 C -0.07 -4.08 5.49 84.86 0.47 -3.61 16 17 N -0.95 -60.88 10.31 21.65 0.22 -60.66 16 18 Si 0.98 47.42 29.55 68.60 2.03 49.45 16 19 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 20 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 21 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 22 C 0.14 5.86 6.65 86.85 0.58 6.44 16 23 C -0.05 -1.55 2.88 -10.10 -0.03 -1.57 16 24 H 0.11 3.11 7.84 -2.39 -0.02 3.09 16 25 C -0.07 -2.08 5.00 -19.87 -0.10 -2.18 16 26 C -0.13 -4.09 8.28 22.27 0.18 -3.91 16 27 C -0.13 -3.19 10.05 22.27 0.22 -2.97 16 28 C -0.13 -2.47 10.05 22.27 0.22 -2.25 16 29 C -0.12 -2.10 10.05 22.27 0.22 -1.88 16 30 C -0.11 -2.39 9.69 22.27 0.22 -2.18 16 31 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 34 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 35 H 0.04 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.42 3.42 8.47 -92.71 -0.79 2.64 16 37 H 0.16 2.11 8.14 -2.39 -0.02 2.09 16 38 H 0.17 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.42 9.11 8.53 -92.71 -0.79 8.32 16 40 H -0.02 -1.04 7.51 -2.38 -0.02 -1.06 16 41 H 0.02 1.40 7.26 -2.39 -0.02 1.39 16 42 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 43 H 0.06 2.24 8.14 -2.39 -0.02 2.22 16 44 H 0.02 0.80 7.05 -2.39 -0.02 0.79 16 45 H 0.09 3.36 7.02 -2.91 -0.02 3.34 16 46 H 0.13 2.77 8.06 -2.91 -0.02 2.75 16 47 H 0.15 1.96 8.06 -2.91 -0.02 1.94 16 48 H 0.15 1.70 8.06 -2.91 -0.02 1.67 16 49 H 0.15 2.28 7.99 -2.91 -0.02 2.26 16 Total: -1.00 -96.53 401.22 1.29 -95.24 By element: Atomic # 1 Polarization: 21.66 SS G_CDS: -0.60 Total: 21.06 kcal Atomic # 6 Polarization: 15.30 SS G_CDS: 6.24 Total: 21.54 kcal Atomic # 7 Polarization: -128.94 SS G_CDS: -6.94 Total: -135.88 kcal Atomic # 8 Polarization: -51.98 SS G_CDS: 0.57 Total: -51.41 kcal Atomic # 14 Polarization: 47.42 SS G_CDS: 2.03 Total: 49.45 kcal Total: -96.53 1.29 -95.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001264444530.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.801 kcal (2) G-P(sol) polarization free energy of solvation -96.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds