Wall clock time and date at job start Wed Apr 1 2020 04:00:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47496 * 2 1 4 4 C 1.36928 * 120.00192 * 275.31214 * 3 2 1 5 5 H 1.08000 * 120.00096 * 37.57622 * 4 3 2 6 6 C 1.38820 * 120.00231 * 217.57629 * 4 3 2 7 7 N 1.31624 * 119.99483 * 21.42381 * 6 4 3 8 8 Si 1.86794 * 120.00162 * 201.42544 * 6 4 3 9 9 H 1.48498 * 109.47111 * 60.00039 * 8 6 4 10 10 H 1.48499 * 109.47005 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47160 * 299.99795 * 8 6 4 12 12 C 1.46504 * 119.99416 * 95.31015 * 3 2 1 13 13 C 1.53003 * 109.47051 * 270.00087 * 12 3 2 14 14 C 1.53001 * 109.46807 * 180.02562 * 13 12 3 15 15 N 1.46505 * 109.46840 * 180.02562 * 14 13 12 16 16 C 1.34773 * 120.00042 * 179.97438 * 15 14 13 17 17 O 1.21288 * 120.00101 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00104 * 179.97438 * 16 15 14 19 19 N 1.46506 * 109.46852 * 179.97438 * 18 16 15 20 20 C 1.46742 * 125.62146 * 269.99578 * 19 18 16 21 21 C 1.50827 * 106.24992 * 179.83408 * 20 19 18 22 22 C 1.37572 * 133.23907 * 179.58304 * 21 20 19 23 23 C 1.38478 * 119.95828 * 180.30453 * 22 21 20 24 24 C 1.38382 * 120.18610 * 0.28136 * 23 22 21 25 25 C 1.37942 * 120.32229 * 359.97220 * 24 23 22 26 26 C 1.39627 * 119.82559 * 0.02562 * 25 24 23 27 27 C 1.34411 * 125.62514 * 90.02420 * 19 18 16 28 28 O 1.21555 * 124.85636 * 0.02562 * 27 19 18 29 29 H 1.08994 * 109.47491 * 59.99455 * 1 2 3 30 30 H 1.08995 * 109.47566 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46881 * 299.99599 * 1 2 3 32 32 H 1.09004 * 109.47282 * 239.99835 * 2 1 3 33 33 H 1.09001 * 109.47327 * 120.00902 * 2 1 3 34 34 H 0.97001 * 119.99617 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.46968 * 150.00263 * 12 3 2 36 36 H 1.08994 * 109.47498 * 30.00239 * 12 3 2 37 37 H 1.08991 * 109.46995 * 60.00145 * 13 12 3 38 38 H 1.09002 * 109.47078 * 300.00104 * 13 12 3 39 39 H 1.08991 * 109.47801 * 59.99932 * 14 13 12 40 40 H 1.09002 * 109.46810 * 299.99563 * 14 13 12 41 41 H 0.96995 * 119.99979 * 359.97438 * 15 14 13 42 42 H 1.08997 * 109.47009 * 60.00235 * 18 16 15 43 43 H 1.08994 * 109.46952 * 299.99823 * 18 16 15 44 44 H 1.08995 * 110.09988 * 299.22111 * 20 19 18 45 45 H 1.09001 * 110.09489 * 60.83002 * 20 19 18 46 46 H 1.07995 * 120.02136 * 0.58355 * 22 21 20 47 47 H 1.07995 * 119.90653 * 180.25415 * 23 22 21 48 48 H 1.07995 * 119.84057 * 179.97438 * 24 23 22 49 49 H 1.07999 * 120.08630 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0633 -1.1807 5 1 1.4106 1.9279 -1.9626 6 6 3.2113 2.9289 -1.3728 7 7 4.3028 2.7979 -0.6489 8 14 3.0995 4.2795 -2.6583 9 1 1.9629 5.1786 -2.3342 10 1 4.3624 5.0606 -2.6667 11 1 2.8846 3.6726 -3.9965 12 6 2.3733 2.0325 1.2634 13 6 1.1426 2.7381 1.8367 14 6 1.5135 3.4188 3.1558 15 7 0.3350 4.0939 3.7051 16 6 0.4247 4.7647 4.8706 17 8 1.4810 4.8091 5.4650 18 6 -0.7874 5.4596 5.4353 19 7 -0.4326 6.1103 6.6991 20 6 -0.5184 5.4974 8.0296 21 6 -0.0471 6.5442 9.0077 22 6 0.0882 6.5620 10.3767 23 6 0.5539 7.7016 11.0108 24 6 0.8784 8.8257 10.2718 25 6 0.7414 8.8202 8.8992 26 6 0.2725 7.6749 8.2527 27 6 0.0246 7.3674 6.8311 28 8 0.2065 8.1407 5.9110 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 5.0490 3.4030 -0.7828 35 1 3.1618 2.7640 1.0861 36 1 2.7255 1.2831 1.9722 37 1 0.3542 2.0067 2.0139 38 1 0.7904 3.4875 1.1279 39 1 2.3018 4.1502 2.9783 40 1 1.8659 2.6696 3.8647 41 1 -0.5099 4.0582 3.2299 42 1 -1.5759 4.7282 5.6125 43 1 -1.1395 6.2091 4.7266 44 1 -1.5487 5.2150 8.2462 45 1 0.1292 4.6221 8.0811 46 1 -0.1643 5.6863 10.9560 47 1 0.6637 7.7132 12.0851 48 1 1.2406 9.7115 10.7722 49 1 0.9962 9.6995 8.3262 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265142680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:02 Heat of formation + Delta-G solvation = -9.036722 kcal Electronic energy + Delta-G solvation = -29215.448705 eV Core-core repulsion = 25143.521542 eV Total energy + Delta-G solvation = -4071.927163 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.45893 -39.51687 -38.25761 -36.51972 -36.19787 -34.76329 -32.52226 -31.85727 -31.46969 -31.22015 -28.83467 -27.97574 -26.99618 -25.21314 -23.82047 -23.07690 -22.05502 -21.07446 -20.85373 -20.20634 -19.78871 -17.40873 -17.32088 -17.12426 -16.70235 -16.35879 -15.73248 -15.53666 -15.27595 -14.94809 -14.78002 -14.47382 -14.19269 -13.88542 -13.76419 -13.57581 -13.50218 -13.44561 -13.38113 -12.72536 -12.64391 -12.36440 -12.30848 -12.19214 -11.59236 -11.45594 -11.41733 -11.15980 -11.01632 -10.72704 -10.60023 -10.47920 -10.22357 -10.12204 -9.99883 -9.68616 -9.54506 -9.43328 -9.27458 -8.91592 -8.87659 -8.45999 -6.56010 -5.77823 -3.37176 0.44406 0.90197 2.29859 2.57281 2.63589 3.31726 3.37813 3.44673 3.45539 3.54059 3.73288 4.07918 4.48170 4.48404 4.58828 4.70203 4.74464 4.85686 4.92192 5.01928 5.08057 5.09031 5.25518 5.32786 5.40294 5.53714 5.64867 5.73947 5.83139 5.89107 5.97086 5.99339 6.07802 6.18093 6.27209 6.34839 6.41723 6.42189 6.46140 6.57391 6.67767 6.73963 6.76800 6.90657 7.08984 7.17278 7.57825 7.68221 7.82888 7.89863 8.26993 8.53222 9.20427 9.82776 10.41561 11.21702 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.001980 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.540935 B =14140.595371 C =15037.328140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.262 4.262 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.146 4.146 14 C 0.121 3.879 15 N -0.722 5.722 16 C 0.488 3.512 17 O -0.532 6.532 18 C 0.118 3.882 19 N -0.599 5.599 20 C 0.143 3.857 21 C -0.079 4.079 22 C -0.104 4.104 23 C -0.089 4.089 24 C -0.129 4.129 25 C -0.046 4.046 26 C -0.152 4.152 27 C 0.564 3.436 28 O -0.520 6.520 29 H 0.048 0.952 30 H 0.034 0.966 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.256 0.744 35 H 0.095 0.905 36 H 0.024 0.976 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.399 0.601 42 H 0.114 0.886 43 H 0.117 0.883 44 H 0.098 0.902 45 H 0.099 0.901 46 H 0.132 0.868 47 H 0.133 0.867 48 H 0.133 0.867 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.586 5.746 23.921 28.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.392 4.392 5 H 0.076 0.924 6 C -0.188 4.188 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.209 1.209 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.024 3.976 13 C -0.186 4.186 14 C -0.002 4.002 15 N -0.374 5.374 16 C 0.271 3.729 17 O -0.409 6.409 18 C -0.008 4.008 19 N -0.331 5.331 20 C 0.021 3.979 21 C -0.080 4.080 22 C -0.122 4.122 23 C -0.107 4.107 24 C -0.147 4.147 25 C -0.065 4.065 26 C -0.155 4.155 27 C 0.353 3.647 28 O -0.396 6.396 29 H 0.067 0.933 30 H 0.053 0.947 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.112 0.888 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.233 0.767 42 H 0.132 0.868 43 H 0.135 0.865 44 H 0.116 0.884 45 H 0.117 0.883 46 H 0.150 0.850 47 H 0.150 0.850 48 H 0.150 0.850 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -12.543 6.191 23.713 27.531 hybrid contribution -0.407 0.644 -0.927 1.200 sum -12.950 6.835 22.786 27.086 Atomic orbital electron populations 1.22366 1.00193 0.98854 1.01089 1.20846 0.91663 0.87426 0.98710 1.43727 1.76065 1.08150 1.02472 1.18926 1.04666 1.21374 0.94190 0.92373 1.25199 0.94211 1.01279 0.98081 1.69988 1.03176 1.37276 1.42361 0.86486 0.76986 0.82377 0.81619 1.20891 1.21594 1.20723 1.20794 0.94455 0.96632 0.85766 1.22538 1.02375 0.99859 0.93870 1.21492 0.87034 0.96055 0.95618 1.46147 1.14711 1.53606 1.22973 1.21085 0.90758 0.79417 0.81628 1.90727 1.29970 1.60384 1.59784 1.21205 0.95713 0.98651 0.85199 1.47304 1.66160 1.13555 1.06098 1.20496 1.02342 0.95356 0.79736 1.20453 0.98113 0.95262 0.94153 1.20301 1.00875 0.99096 0.91945 1.21330 0.96589 0.92561 1.00267 1.21143 1.01040 0.99080 0.93394 1.20902 0.94659 0.96720 0.94215 1.20377 1.04877 0.96000 0.94250 1.18238 0.76465 0.81600 0.88370 1.90798 1.51684 1.51773 1.45358 0.93269 0.94656 0.93831 0.93894 0.94871 0.93426 0.88768 0.95710 0.93036 0.91661 0.91531 0.92018 0.76671 0.86797 0.86521 0.88440 0.88270 0.85034 0.84952 0.84957 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 10.21 37.16 0.38 -2.52 16 2 C 0.14 2.91 6.44 -4.04 -0.03 2.88 16 3 N -0.58 -14.15 2.43 -173.24 -0.42 -14.57 16 4 C -0.26 -7.03 9.45 -15.06 -0.14 -7.17 16 5 H 0.06 1.56 7.92 -52.49 -0.42 1.15 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -25.51 11.47 55.49 0.64 -24.87 16 8 Si 0.90 21.63 29.60 -169.99 -5.03 16.60 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 12 C 0.15 3.41 5.33 -4.04 -0.02 3.38 16 13 C -0.15 -2.66 5.65 -26.73 -0.15 -2.81 16 14 C 0.12 2.04 5.67 -4.04 -0.02 2.01 16 15 N -0.72 -9.74 5.56 -60.29 -0.33 -10.08 16 16 C 0.49 6.97 7.90 -10.99 -0.09 6.88 16 17 O -0.53 -10.05 16.43 5.55 0.09 -9.96 16 18 C 0.12 1.18 6.54 -5.19 -0.03 1.15 16 19 N -0.60 -6.96 2.45 -177.51 -0.44 -7.40 16 20 C 0.14 1.19 7.38 -5.00 -0.04 1.15 16 21 C -0.08 -0.72 6.38 -104.27 -0.66 -1.38 16 22 C -0.10 -0.70 10.03 -39.74 -0.40 -1.10 16 23 C -0.09 -0.54 10.05 -39.44 -0.40 -0.94 16 24 C -0.13 -0.91 10.02 -39.64 -0.40 -1.31 16 25 C -0.05 -0.45 10.10 -39.17 -0.40 -0.85 16 26 C -0.15 -1.79 6.26 -105.05 -0.66 -2.44 16 27 C 0.56 8.20 7.97 -12.63 -0.10 8.10 16 28 O -0.52 -9.48 17.71 5.32 0.09 -9.39 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.04 0.73 6.64 -51.93 -0.34 0.39 16 32 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.03 0.65 7.83 -51.93 -0.41 0.24 16 34 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.09 2.46 5.52 -51.93 -0.29 2.18 16 36 H 0.02 0.54 7.86 -51.93 -0.41 0.13 16 37 H 0.05 0.86 6.64 -51.93 -0.34 0.52 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.40 4.15 8.47 -40.82 -0.35 3.81 16 42 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.12 1.12 8.01 -51.93 -0.42 0.71 16 44 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 46 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 47 H 0.13 0.44 8.06 -52.49 -0.42 0.02 16 48 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 49 H 0.13 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 409.97 15.07 6.18 6.18 Total: -1.00 -36.30 409.97 -10.06 -46.36 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -7.60 Total: 1.82 kcal Atomic # 6 Polarization: 8.56 SS G_CDS: -3.24 Total: 5.32 kcal Atomic # 7 Polarization: -56.36 SS G_CDS: -0.56 Total: -56.92 kcal Atomic # 8 Polarization: -19.53 SS G_CDS: 0.19 Total: -19.35 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -36.30 -10.06 -46.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265142680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.322 kcal (2) G-P(sol) polarization free energy of solvation -36.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds