Wall clock time and date at job start Wed Apr 1 2020 04:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46498 * 109.47496 * 2 1 4 4 C 1.36928 * 120.00192 * 275.31214 * 3 2 1 5 5 H 1.08000 * 120.00096 * 37.57622 * 4 3 2 6 6 C 1.38820 * 120.00231 * 217.57629 * 4 3 2 7 7 N 1.31624 * 119.99483 * 21.42381 * 6 4 3 8 8 Si 1.86794 * 120.00162 * 201.42544 * 6 4 3 9 9 H 1.48498 * 109.47111 * 60.00039 * 8 6 4 10 10 H 1.48499 * 109.47005 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47160 * 299.99795 * 8 6 4 12 12 C 1.46504 * 119.99416 * 95.31015 * 3 2 1 13 13 C 1.53003 * 109.47051 * 270.00087 * 12 3 2 14 14 C 1.53001 * 109.46807 * 180.02562 * 13 12 3 15 15 N 1.46505 * 109.46840 * 180.02562 * 14 13 12 16 16 C 1.34773 * 120.00042 * 179.97438 * 15 14 13 17 17 O 1.21288 * 120.00101 * 359.97438 * 16 15 14 18 18 C 1.50699 * 120.00104 * 179.97438 * 16 15 14 19 19 N 1.46506 * 109.46852 * 179.97438 * 18 16 15 20 20 C 1.46742 * 125.62146 * 269.99578 * 19 18 16 21 21 C 1.50827 * 106.24992 * 179.83408 * 20 19 18 22 22 C 1.37572 * 133.23907 * 179.58304 * 21 20 19 23 23 C 1.38478 * 119.95828 * 180.30453 * 22 21 20 24 24 C 1.38382 * 120.18610 * 0.28136 * 23 22 21 25 25 C 1.37942 * 120.32229 * 359.97220 * 24 23 22 26 26 C 1.39627 * 119.82559 * 0.02562 * 25 24 23 27 27 C 1.34411 * 125.62514 * 90.02420 * 19 18 16 28 28 O 1.21555 * 124.85636 * 0.02562 * 27 19 18 29 29 H 1.08994 * 109.47491 * 59.99455 * 1 2 3 30 30 H 1.08995 * 109.47566 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46881 * 299.99599 * 1 2 3 32 32 H 1.09004 * 109.47282 * 239.99835 * 2 1 3 33 33 H 1.09001 * 109.47327 * 120.00902 * 2 1 3 34 34 H 0.97001 * 119.99617 * 180.02562 * 7 6 4 35 35 H 1.09005 * 109.46968 * 150.00263 * 12 3 2 36 36 H 1.08994 * 109.47498 * 30.00239 * 12 3 2 37 37 H 1.08991 * 109.46995 * 60.00145 * 13 12 3 38 38 H 1.09002 * 109.47078 * 300.00104 * 13 12 3 39 39 H 1.08991 * 109.47801 * 59.99932 * 14 13 12 40 40 H 1.09002 * 109.46810 * 299.99563 * 14 13 12 41 41 H 0.96995 * 119.99979 * 359.97438 * 15 14 13 42 42 H 1.08997 * 109.47009 * 60.00235 * 18 16 15 43 43 H 1.08994 * 109.46952 * 299.99823 * 18 16 15 44 44 H 1.08995 * 110.09988 * 299.22111 * 20 19 18 45 45 H 1.09001 * 110.09489 * 60.83002 * 20 19 18 46 46 H 1.07995 * 120.02136 * 0.58355 * 22 21 20 47 47 H 1.07995 * 119.90653 * 180.25415 * 23 22 21 48 48 H 1.07995 * 119.84057 * 179.97438 * 24 23 22 49 49 H 1.07999 * 120.08630 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1431 2.0633 -1.1807 5 1 1.4106 1.9279 -1.9626 6 6 3.2113 2.9289 -1.3728 7 7 4.3028 2.7979 -0.6489 8 14 3.0995 4.2795 -2.6583 9 1 1.9629 5.1786 -2.3342 10 1 4.3624 5.0606 -2.6667 11 1 2.8846 3.6726 -3.9965 12 6 2.3733 2.0325 1.2634 13 6 1.1426 2.7381 1.8367 14 6 1.5135 3.4188 3.1558 15 7 0.3350 4.0939 3.7051 16 6 0.4247 4.7647 4.8706 17 8 1.4810 4.8091 5.4650 18 6 -0.7874 5.4596 5.4353 19 7 -0.4326 6.1103 6.6991 20 6 -0.5184 5.4974 8.0296 21 6 -0.0471 6.5442 9.0077 22 6 0.0882 6.5620 10.3767 23 6 0.5539 7.7016 11.0108 24 6 0.8784 8.8257 10.2718 25 6 0.7414 8.8202 8.8992 26 6 0.2725 7.6749 8.2527 27 6 0.0246 7.3674 6.8311 28 8 0.2065 8.1407 5.9110 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5140 0.8899 34 1 5.0490 3.4030 -0.7828 35 1 3.1618 2.7640 1.0861 36 1 2.7255 1.2831 1.9722 37 1 0.3542 2.0067 2.0139 38 1 0.7904 3.4875 1.1279 39 1 2.3018 4.1502 2.9783 40 1 1.8659 2.6696 3.8647 41 1 -0.5099 4.0582 3.2299 42 1 -1.5759 4.7282 5.6125 43 1 -1.1395 6.2091 4.7266 44 1 -1.5487 5.2150 8.2462 45 1 0.1292 4.6221 8.0811 46 1 -0.1643 5.6863 10.9560 47 1 0.6637 7.7132 12.0851 48 1 1.2406 9.7115 10.7722 49 1 0.9962 9.6995 8.3262 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265142680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:00:00 Heat of formation + Delta-G solvation = -32.843612 kcal Electronic energy + Delta-G solvation = -29216.481049 eV Core-core repulsion = 25143.521542 eV Total energy + Delta-G solvation = -4072.959507 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.27364 -40.64674 -39.11345 -38.20255 -37.19392 -36.17851 -33.83106 -33.41596 -32.55097 -32.07440 -30.35474 -29.05200 -27.73688 -26.91325 -25.31597 -24.00540 -22.68617 -22.56956 -22.12957 -21.68119 -20.86196 -18.64763 -18.46788 -18.07811 -17.99652 -17.19122 -17.00022 -16.68983 -16.58409 -16.32521 -15.87316 -15.55799 -15.48067 -15.12831 -15.02681 -14.65234 -14.63703 -14.44502 -14.24546 -14.07181 -14.05602 -13.36203 -13.34563 -13.22333 -13.08001 -12.78243 -12.73844 -12.71487 -12.56519 -12.37259 -12.15731 -12.05136 -11.94786 -11.48775 -11.36435 -11.23894 -11.11492 -10.50212 -10.22047 -10.16331 -9.93279 -9.68521 -8.55626 -7.82273 -5.46197 -0.25211 0.32684 1.42131 1.44033 1.46837 1.51847 1.52230 1.75498 2.27673 2.49535 2.80508 3.07494 3.23005 3.37174 3.65596 3.71241 3.90187 4.05092 4.14941 4.16529 4.23191 4.30394 4.32907 4.42450 4.45246 4.50240 4.51120 4.53612 4.72054 4.76725 4.77416 4.89699 4.96488 4.99828 5.03862 5.07588 5.16811 5.34853 5.35798 5.38737 5.42600 5.45859 5.48528 5.61461 5.69082 5.78252 5.83525 5.90480 6.46770 6.48431 6.91622 7.16816 7.18280 7.88524 8.40250 9.11863 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.001980 C = 0.001862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.540935 B =14140.595371 C =15037.328140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.261 4.261 5 H 0.057 0.943 6 C -0.038 4.038 7 N -0.919 5.919 8 Si 0.952 3.048 9 H -0.279 1.279 10 H -0.298 1.298 11 H -0.272 1.272 12 C 0.150 3.850 13 C -0.121 4.121 14 C 0.135 3.865 15 N -0.710 5.710 16 C 0.485 3.515 17 O -0.584 6.584 18 C 0.120 3.880 19 N -0.599 5.599 20 C 0.140 3.860 21 C -0.081 4.081 22 C -0.101 4.101 23 C -0.079 4.079 24 C -0.129 4.129 25 C -0.068 4.068 26 C -0.195 4.195 27 C 0.546 3.454 28 O -0.581 6.581 29 H 0.035 0.965 30 H 0.065 0.935 31 H 0.053 0.947 32 H 0.028 0.972 33 H 0.045 0.955 34 H 0.250 0.750 35 H 0.055 0.945 36 H 0.029 0.971 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.032 0.968 40 H 0.063 0.937 41 H 0.418 0.582 42 H 0.172 0.828 43 H 0.121 0.879 44 H 0.141 0.859 45 H 0.101 0.899 46 H 0.167 0.833 47 H 0.170 0.830 48 H 0.157 0.843 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.517 4.437 26.586 31.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.322 5.322 4 C -0.392 4.392 5 H 0.074 0.926 6 C -0.235 4.235 7 N -0.563 5.563 8 Si 0.781 3.219 9 H -0.205 1.205 10 H -0.224 1.224 11 H -0.198 1.198 12 C 0.023 3.977 13 C -0.161 4.161 14 C 0.010 3.990 15 N -0.363 5.363 16 C 0.271 3.729 17 O -0.464 6.464 18 C -0.004 4.004 19 N -0.329 5.329 20 C 0.019 3.981 21 C -0.082 4.082 22 C -0.119 4.119 23 C -0.096 4.096 24 C -0.147 4.147 25 C -0.087 4.087 26 C -0.198 4.198 27 C 0.337 3.663 28 O -0.462 6.462 29 H 0.054 0.946 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.073 0.927 36 H 0.047 0.953 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.051 0.949 40 H 0.081 0.919 41 H 0.255 0.745 42 H 0.189 0.811 43 H 0.139 0.861 44 H 0.158 0.842 45 H 0.119 0.881 46 H 0.184 0.816 47 H 0.188 0.812 48 H 0.175 0.825 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -15.553 4.828 26.386 31.007 hybrid contribution 0.525 0.959 -1.652 1.981 sum -15.028 5.787 24.734 29.515 Atomic orbital electron populations 1.22162 0.97058 1.00835 1.00922 1.21012 0.93996 0.85555 0.98635 1.43973 1.76457 1.09623 1.02162 1.19148 1.03963 1.21174 0.94910 0.92569 1.25860 0.94105 1.03400 1.00183 1.70126 1.03783 1.38081 1.44269 0.85580 0.76438 0.79958 0.79960 1.20518 1.22414 1.19766 1.20695 0.95331 0.96069 0.85646 1.22156 1.00735 0.99540 0.93689 1.21102 0.87505 0.95269 0.95145 1.45929 1.14442 1.53010 1.22932 1.21896 0.91405 0.78573 0.81052 1.90709 1.32280 1.62183 1.61246 1.21446 0.94609 0.99481 0.84895 1.47553 1.64655 1.12854 1.07830 1.20808 1.04827 0.94666 0.77828 1.20721 0.97994 0.94295 0.95205 1.20759 0.99623 1.00502 0.91002 1.21844 0.94245 0.91518 1.02034 1.21471 1.00365 1.00707 0.92118 1.21063 0.95713 0.96214 0.95730 1.20424 1.08061 0.98144 0.93203 1.18929 0.75920 0.82259 0.89219 1.90734 1.54643 1.53642 1.47192 0.94562 0.91589 0.92788 0.95366 0.93624 0.94132 0.92670 0.95290 0.90479 0.93172 0.94910 0.91891 0.74477 0.81116 0.86136 0.84150 0.88098 0.81574 0.81245 0.82495 0.86157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.86 10.21 71.98 0.73 -4.12 16 2 C 0.13 5.38 6.44 86.38 0.56 5.94 16 3 N -0.60 -29.12 2.43 -701.99 -1.71 -30.83 16 4 C -0.26 -14.14 9.45 84.04 0.79 -13.34 16 5 H 0.06 3.02 7.92 -2.91 -0.02 3.00 16 6 C -0.04 -2.14 4.95 84.86 0.42 -1.72 16 7 N -0.92 -54.73 11.47 21.65 0.25 -54.48 16 8 Si 0.95 45.34 29.60 68.60 2.03 47.37 16 9 H -0.28 -12.99 7.11 99.48 0.71 -12.29 16 10 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.74 16 12 C 0.15 6.85 5.33 86.38 0.46 7.31 16 13 C -0.12 -4.34 5.65 30.60 0.17 -4.17 16 14 C 0.13 4.54 5.67 86.38 0.49 5.03 16 15 N -0.71 -18.42 5.56 -463.05 -2.57 -20.99 16 16 C 0.48 13.61 7.90 87.66 0.69 14.31 16 17 O -0.58 -22.62 16.43 -3.06 -0.05 -22.67 16 18 C 0.12 2.21 6.54 85.63 0.56 2.77 16 19 N -0.60 -13.52 2.45 -834.00 -2.05 -15.56 16 20 C 0.14 2.01 7.38 85.63 0.63 2.64 16 21 C -0.08 -1.34 6.38 -19.63 -0.13 -1.46 16 22 C -0.10 -1.01 10.03 22.17 0.22 -0.78 16 23 C -0.08 -0.68 10.05 22.36 0.22 -0.46 16 24 C -0.13 -1.62 10.02 22.23 0.22 -1.40 16 25 C -0.07 -1.40 10.10 22.54 0.23 -1.17 16 26 C -0.20 -4.74 6.26 -20.14 -0.13 -4.86 16 27 C 0.55 16.72 7.97 86.76 0.69 17.41 16 28 O -0.58 -23.02 17.71 -3.89 -0.07 -23.09 16 29 H 0.04 1.25 8.14 -2.39 -0.02 1.23 16 30 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 31 H 0.05 1.62 6.64 -2.39 -0.02 1.60 16 32 H 0.03 1.20 8.08 -2.38 -0.02 1.18 16 33 H 0.05 1.71 7.83 -2.39 -0.02 1.69 16 34 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.06 3.01 5.52 -2.38 -0.01 3.00 16 36 H 0.03 1.26 7.86 -2.39 -0.02 1.25 16 37 H 0.08 2.39 6.64 -2.39 -0.02 2.37 16 38 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 41 H 0.42 7.73 8.47 -92.71 -0.79 6.95 16 42 H 0.17 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.12 2.20 8.01 -2.39 -0.02 2.18 16 44 H 0.14 0.81 8.14 -2.39 -0.02 0.79 16 45 H 0.10 1.46 8.14 -2.39 -0.02 1.45 16 46 H 0.17 0.49 8.06 -2.91 -0.02 0.46 16 47 H 0.17 0.23 8.06 -2.91 -0.02 0.21 16 48 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 49 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 Total: -1.00 -85.98 409.97 2.86 -83.13 By element: Atomic # 1 Polarization: 15.05 SS G_CDS: 0.17 Total: 15.22 kcal Atomic # 6 Polarization: 15.06 SS G_CDS: 6.85 Total: 21.91 kcal Atomic # 7 Polarization: -115.78 SS G_CDS: -6.08 Total: -121.86 kcal Atomic # 8 Polarization: -45.64 SS G_CDS: -0.12 Total: -45.76 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -85.98 2.86 -83.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265142680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.284 kcal (2) G-P(sol) polarization free energy of solvation -85.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.855 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds