Wall clock time and date at job start Wed Apr 1 2020 03:58:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47301 * 2 1 4 4 C 1.36944 * 119.99618 * 275.30634 * 3 2 1 5 5 H 1.07996 * 119.99933 * 37.58211 * 4 3 2 6 6 C 1.38806 * 119.99582 * 217.57645 * 4 3 2 7 7 N 1.31622 * 120.00534 * 21.42883 * 6 4 3 8 8 Si 1.86805 * 119.99768 * 201.42239 * 6 4 3 9 9 H 1.48497 * 109.46818 * 60.00541 * 8 6 4 10 10 H 1.48502 * 109.47191 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47161 * 300.00142 * 8 6 4 12 12 C 1.46500 * 120.00311 * 95.30323 * 3 2 1 13 13 C 1.53004 * 109.47231 * 270.00145 * 12 3 2 14 14 C 1.53001 * 109.46761 * 180.02562 * 13 12 3 15 15 N 1.46505 * 109.46629 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99636 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00092 * 0.27246 * 16 15 14 18 18 C 1.50704 * 119.99665 * 179.97438 * 16 15 14 19 19 C 1.53003 * 109.46915 * 179.97438 * 18 16 15 20 20 C 1.50695 * 109.46936 * 179.97438 * 19 18 16 21 21 N 1.29911 * 124.85488 * 89.70217 * 20 19 18 22 22 C 1.36055 * 108.80420 * 179.89371 * 21 20 19 23 23 C 1.39579 * 133.80888 * 180.10013 * 22 21 20 24 24 C 1.37681 * 119.73388 * 180.26544 * 23 22 21 25 25 C 1.38720 * 120.42140 * 0.04172 * 24 23 22 26 26 C 1.37916 * 120.47355 * 359.95457 * 25 24 23 27 27 C 1.38662 * 119.87374 * 0.02562 * 26 25 24 28 28 O 1.34225 * 124.86203 * 270.00467 * 20 19 18 29 29 H 1.09007 * 109.46588 * 60.00305 * 1 2 3 30 30 H 1.09001 * 109.47320 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47563 * 300.00735 * 1 2 3 32 32 H 1.08991 * 109.47218 * 239.99234 * 2 1 3 33 33 H 1.09007 * 109.46588 * 119.99695 * 2 1 3 34 34 H 0.96999 * 120.00117 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.46805 * 149.99932 * 12 3 2 36 36 H 1.09002 * 109.46958 * 30.00018 * 12 3 2 37 37 H 1.08997 * 109.46970 * 60.00102 * 13 12 3 38 38 H 1.09002 * 109.47046 * 299.99819 * 13 12 3 39 39 H 1.08997 * 109.47374 * 60.00253 * 14 13 12 40 40 H 1.09002 * 109.47114 * 299.99681 * 14 13 12 41 41 H 0.97000 * 119.99750 * 359.97438 * 15 14 13 42 42 H 1.08994 * 109.47288 * 300.00321 * 18 16 15 43 43 H 1.08997 * 109.46834 * 60.00366 * 18 16 15 44 44 H 1.08995 * 109.47458 * 300.00909 * 19 18 16 45 45 H 1.09002 * 109.46591 * 60.00278 * 19 18 16 46 46 H 1.08004 * 120.13480 * 0.30242 * 23 22 21 47 47 H 1.08001 * 119.79231 * 180.02562 * 24 23 22 48 48 H 1.08001 * 119.76602 * 179.97438 * 25 24 23 49 49 H 1.08001 * 120.06179 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0632 -1.1809 5 1 1.4107 1.9277 -1.9628 6 6 3.2113 2.9287 -1.3729 7 7 4.3028 2.7979 -0.6490 8 14 3.0996 4.2792 -2.6587 9 1 1.9630 5.1783 -2.3347 10 1 4.3625 5.0604 -2.6671 11 1 2.8848 3.6721 -3.9968 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7384 1.8364 14 6 1.5133 3.4194 3.1554 15 7 0.3347 4.0945 3.7045 16 6 0.4244 4.7655 4.8699 17 8 1.4820 4.8145 5.4616 18 6 -0.7878 5.4605 5.4344 19 6 -0.4174 6.1403 6.7542 20 6 -1.6294 6.8358 7.3183 21 7 -2.4915 6.2899 8.1224 22 6 -3.4483 7.2076 8.4281 23 6 -4.5918 7.1813 9.2281 24 6 -5.3797 8.3058 9.3302 25 6 -5.0446 9.4631 8.6427 26 6 -3.9176 9.5034 7.8486 27 6 -3.1125 8.3803 7.7347 28 8 -1.9758 8.1061 7.0576 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 5.0493 3.4026 -0.7835 35 1 3.1617 2.7641 1.0859 36 1 2.7254 1.2834 1.9722 37 1 0.3541 2.0070 2.0137 38 1 0.7903 3.4877 1.1275 39 1 2.3016 4.1508 2.9776 40 1 1.8657 2.6703 3.8645 41 1 -0.5101 4.0586 3.2292 42 1 -1.1400 6.2098 4.7256 43 1 -1.5762 4.7290 5.6117 44 1 -0.0653 5.3907 7.4628 45 1 0.3712 6.8717 6.5772 46 1 -4.8571 6.2828 9.7654 47 1 -6.2645 8.2867 9.9493 48 1 -5.6704 10.3389 8.7300 49 1 -3.6628 10.4081 7.3166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265145093.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:47 Heat of formation + Delta-G solvation = 6.186106 kcal Electronic energy + Delta-G solvation = -28421.915228 eV Core-core repulsion = 24350.648176 eV Total energy + Delta-G solvation = -4071.267052 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -43.62031 -39.70178 -38.42801 -36.49644 -35.36566 -34.82869 -33.75850 -31.87087 -31.33253 -31.09468 -29.73172 -28.54059 -26.40924 -24.84271 -23.61606 -23.39512 -22.52384 -21.69301 -21.05595 -20.46525 -19.88322 -18.47168 -17.69246 -17.31145 -16.88798 -16.71004 -15.93712 -15.85039 -15.57964 -15.04883 -14.64497 -14.49341 -14.31428 -14.13190 -13.75352 -13.70725 -13.21365 -13.14837 -12.91778 -12.72584 -12.65303 -12.55505 -12.36648 -11.95400 -11.67068 -11.62865 -11.54113 -11.41193 -11.15837 -11.02994 -10.83060 -10.74916 -10.59660 -10.48954 -10.08166 -9.86719 -9.65242 -9.54666 -9.24765 -8.88716 -8.86023 -8.47731 -6.56974 -5.79324 -3.38572 0.25355 0.78488 1.99044 2.08899 2.64320 3.14687 3.22380 3.35007 3.41835 3.42807 3.52527 4.09078 4.36815 4.46048 4.46485 4.56564 4.66205 4.71103 4.83996 4.87337 4.98197 5.16750 5.24443 5.39318 5.40494 5.42126 5.56748 5.62715 5.64741 5.80956 5.82670 5.87694 5.88321 5.97521 6.07587 6.19123 6.27154 6.34766 6.41719 6.45693 6.57677 6.73775 6.76227 6.90727 7.08442 7.16976 7.25224 7.58203 7.67003 7.81473 8.25108 8.51880 9.19188 9.81482 10.40412 11.20175 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016095 B = 0.001655 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.261791 B =16911.170611 C =17404.889230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.058 0.942 6 C 0.013 3.987 7 N -0.886 5.886 8 Si 0.896 3.104 9 H -0.283 1.283 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.151 3.849 13 C -0.147 4.147 14 C 0.120 3.880 15 N -0.723 5.723 16 C 0.513 3.487 17 O -0.543 6.543 18 C -0.139 4.139 19 C -0.015 4.015 20 C 0.259 3.741 21 N -0.478 5.478 22 C 0.022 3.978 23 C -0.062 4.062 24 C -0.121 4.121 25 C -0.096 4.096 26 C -0.092 4.092 27 C 0.006 3.994 28 O -0.212 6.212 29 H 0.048 0.952 30 H 0.035 0.965 31 H 0.043 0.957 32 H 0.043 0.957 33 H 0.033 0.967 34 H 0.256 0.744 35 H 0.095 0.905 36 H 0.025 0.975 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.063 0.937 41 H 0.400 0.600 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.121 0.879 45 H 0.108 0.892 46 H 0.136 0.864 47 H 0.137 0.863 48 H 0.140 0.860 49 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.455 10.828 18.740 28.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.210 1.210 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.024 3.976 13 C -0.187 4.187 14 C -0.004 4.004 15 N -0.374 5.374 16 C 0.298 3.702 17 O -0.421 6.421 18 C -0.180 4.180 19 C -0.053 4.053 20 C 0.048 3.952 21 N -0.207 5.207 22 C -0.090 4.090 23 C -0.081 4.081 24 C -0.140 4.140 25 C -0.114 4.114 26 C -0.111 4.111 27 C -0.045 4.045 28 O -0.103 6.103 29 H 0.067 0.933 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.113 0.887 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.086 0.914 40 H 0.081 0.919 41 H 0.234 0.766 42 H 0.118 0.882 43 H 0.121 0.879 44 H 0.139 0.861 45 H 0.126 0.874 46 H 0.154 0.846 47 H 0.155 0.845 48 H 0.158 0.842 49 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -17.455 10.304 19.349 28.022 hybrid contribution -0.604 1.466 -1.191 1.983 sum -18.059 11.770 18.158 28.184 Atomic orbital electron populations 1.22371 1.00187 0.98885 1.01082 1.20849 0.91657 0.87410 0.98734 1.43734 1.76061 1.08173 1.02478 1.18937 1.04674 1.21317 0.94192 0.92389 1.25186 0.94210 1.01287 0.98052 1.69988 1.03148 1.37316 1.42359 0.86493 0.76908 0.82397 0.81701 1.20950 1.21600 1.20727 1.20797 0.94425 0.96652 0.85766 1.22546 1.02412 0.99892 0.93900 1.21513 0.87002 0.96170 0.95677 1.46174 1.14702 1.53472 1.23028 1.20290 0.89668 0.79057 0.81191 1.90728 1.30214 1.61309 1.59857 1.21637 0.98195 1.01411 0.96798 1.20014 0.88907 0.99554 0.96855 1.26537 0.96913 0.78922 0.92847 1.70688 1.03627 1.30766 1.15638 1.19948 0.97568 0.90029 1.01406 1.20353 0.91441 0.99413 0.96905 1.21069 1.00124 0.92419 1.00387 1.21038 0.95693 0.98790 0.95888 1.19925 0.94049 0.95612 1.01488 1.20374 0.88476 0.98217 0.97411 1.84529 1.35999 1.31100 1.58675 0.93286 0.94636 0.93822 0.93887 0.94829 0.93436 0.88743 0.95663 0.93040 0.91721 0.91400 0.91881 0.76627 0.88211 0.87904 0.86112 0.87357 0.84591 0.84489 0.84190 0.84645 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.92 10.21 37.16 0.38 -2.54 16 2 C 0.14 2.90 6.44 -4.04 -0.03 2.87 16 3 N -0.58 -14.03 2.43 -173.24 -0.42 -14.45 16 4 C -0.26 -6.94 9.45 -15.06 -0.14 -7.08 16 5 H 0.06 1.55 7.92 -52.49 -0.42 1.13 16 6 C 0.01 0.36 4.95 -17.43 -0.09 0.27 16 7 N -0.89 -25.05 11.47 55.49 0.64 -24.41 16 8 Si 0.90 21.17 29.60 -169.99 -5.03 16.14 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 11 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 12 C 0.15 3.35 5.33 -4.04 -0.02 3.33 16 13 C -0.15 -2.63 5.65 -26.73 -0.15 -2.78 16 14 C 0.12 1.92 5.67 -4.04 -0.02 1.90 16 15 N -0.72 -9.33 5.56 -60.29 -0.33 -9.67 16 16 C 0.51 6.61 7.83 -10.98 -0.09 6.52 16 17 O -0.54 -9.03 15.98 5.55 0.09 -8.94 16 18 C -0.14 -1.26 5.68 -27.88 -0.16 -1.42 16 19 C -0.01 -0.14 5.13 -27.88 -0.14 -0.28 16 20 C 0.26 2.85 7.49 -13.09 -0.10 2.75 16 21 N -0.48 -5.84 11.34 -8.71 -0.10 -5.94 16 22 C 0.02 0.25 7.24 -84.71 -0.61 -0.37 16 23 C -0.06 -0.52 10.10 -39.28 -0.40 -0.92 16 24 C -0.12 -0.72 10.02 -39.61 -0.40 -1.11 16 25 C -0.10 -0.55 10.03 -39.52 -0.40 -0.94 16 26 C -0.09 -0.71 10.06 -39.54 -0.40 -1.10 16 27 C 0.01 0.06 7.43 -38.64 -0.29 -0.23 16 28 O -0.21 -2.41 10.77 3.63 0.04 -2.37 16 29 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.04 0.74 6.64 -51.93 -0.34 0.39 16 32 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 33 H 0.03 0.65 7.83 -51.93 -0.41 0.25 16 34 H 0.26 7.01 8.31 -40.82 -0.34 6.68 16 35 H 0.09 2.41 5.52 -51.93 -0.29 2.12 16 36 H 0.02 0.54 7.86 -51.93 -0.41 0.13 16 37 H 0.05 0.87 6.64 -51.93 -0.34 0.52 16 38 H 0.06 1.25 8.14 -51.93 -0.42 0.82 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 41 H 0.40 4.17 8.47 -40.82 -0.35 3.82 16 42 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 44 H 0.12 1.16 8.10 -51.93 -0.42 0.74 16 45 H 0.11 0.99 8.10 -51.93 -0.42 0.57 16 46 H 0.14 0.92 8.06 -52.48 -0.42 0.50 16 47 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16 48 H 0.14 0.38 8.06 -52.49 -0.42 -0.05 16 49 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 LS Contribution 409.89 15.07 6.18 6.18 Total: -1.00 -32.77 409.89 -9.59 -42.36 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -7.60 Total: 2.26 kcal Atomic # 6 Polarization: 1.90 SS G_CDS: -3.04 Total: -1.14 kcal Atomic # 7 Polarization: -54.25 SS G_CDS: -0.22 Total: -54.47 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.13 Total: -11.31 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.77 -9.59 -42.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265145093.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.546 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds