Wall clock time and date at job start Wed Apr 1 2020 03:58:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47301 * 2 1 4 4 C 1.36944 * 119.99618 * 275.30634 * 3 2 1 5 5 H 1.07996 * 119.99933 * 37.58211 * 4 3 2 6 6 C 1.38806 * 119.99582 * 217.57645 * 4 3 2 7 7 N 1.31622 * 120.00534 * 21.42883 * 6 4 3 8 8 Si 1.86805 * 119.99768 * 201.42239 * 6 4 3 9 9 H 1.48497 * 109.46818 * 60.00541 * 8 6 4 10 10 H 1.48502 * 109.47191 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47161 * 300.00142 * 8 6 4 12 12 C 1.46500 * 120.00311 * 95.30323 * 3 2 1 13 13 C 1.53004 * 109.47231 * 270.00145 * 12 3 2 14 14 C 1.53001 * 109.46761 * 180.02562 * 13 12 3 15 15 N 1.46505 * 109.46629 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99636 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00092 * 0.27246 * 16 15 14 18 18 C 1.50704 * 119.99665 * 179.97438 * 16 15 14 19 19 C 1.53003 * 109.46915 * 179.97438 * 18 16 15 20 20 C 1.50695 * 109.46936 * 179.97438 * 19 18 16 21 21 N 1.29911 * 124.85488 * 89.70217 * 20 19 18 22 22 C 1.36055 * 108.80420 * 179.89371 * 21 20 19 23 23 C 1.39579 * 133.80888 * 180.10013 * 22 21 20 24 24 C 1.37681 * 119.73388 * 180.26544 * 23 22 21 25 25 C 1.38720 * 120.42140 * 0.04172 * 24 23 22 26 26 C 1.37916 * 120.47355 * 359.95457 * 25 24 23 27 27 C 1.38662 * 119.87374 * 0.02562 * 26 25 24 28 28 O 1.34225 * 124.86203 * 270.00467 * 20 19 18 29 29 H 1.09007 * 109.46588 * 60.00305 * 1 2 3 30 30 H 1.09001 * 109.47320 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47563 * 300.00735 * 1 2 3 32 32 H 1.08991 * 109.47218 * 239.99234 * 2 1 3 33 33 H 1.09007 * 109.46588 * 119.99695 * 2 1 3 34 34 H 0.96999 * 120.00117 * 179.97438 * 7 6 4 35 35 H 1.09002 * 109.46805 * 149.99932 * 12 3 2 36 36 H 1.09002 * 109.46958 * 30.00018 * 12 3 2 37 37 H 1.08997 * 109.46970 * 60.00102 * 13 12 3 38 38 H 1.09002 * 109.47046 * 299.99819 * 13 12 3 39 39 H 1.08997 * 109.47374 * 60.00253 * 14 13 12 40 40 H 1.09002 * 109.47114 * 299.99681 * 14 13 12 41 41 H 0.97000 * 119.99750 * 359.97438 * 15 14 13 42 42 H 1.08994 * 109.47288 * 300.00321 * 18 16 15 43 43 H 1.08997 * 109.46834 * 60.00366 * 18 16 15 44 44 H 1.08995 * 109.47458 * 300.00909 * 19 18 16 45 45 H 1.09002 * 109.46591 * 60.00278 * 19 18 16 46 46 H 1.08004 * 120.13480 * 0.30242 * 23 22 21 47 47 H 1.08001 * 119.79231 * 180.02562 * 24 23 22 48 48 H 1.08001 * 119.76602 * 179.97438 * 25 24 23 49 49 H 1.08001 * 120.06179 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0632 -1.1809 5 1 1.4107 1.9277 -1.9628 6 6 3.2113 2.9287 -1.3729 7 7 4.3028 2.7979 -0.6490 8 14 3.0996 4.2792 -2.6587 9 1 1.9630 5.1783 -2.3347 10 1 4.3625 5.0604 -2.6671 11 1 2.8848 3.6721 -3.9968 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7384 1.8364 14 6 1.5133 3.4194 3.1554 15 7 0.3347 4.0945 3.7045 16 6 0.4244 4.7655 4.8699 17 8 1.4820 4.8145 5.4616 18 6 -0.7878 5.4605 5.4344 19 6 -0.4174 6.1403 6.7542 20 6 -1.6294 6.8358 7.3183 21 7 -2.4915 6.2899 8.1224 22 6 -3.4483 7.2076 8.4281 23 6 -4.5918 7.1813 9.2281 24 6 -5.3797 8.3058 9.3302 25 6 -5.0446 9.4631 8.6427 26 6 -3.9176 9.5034 7.8486 27 6 -3.1125 8.3803 7.7347 28 8 -1.9758 8.1061 7.0576 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8934 -0.5139 -0.8898 33 1 1.8933 -0.5138 0.8901 34 1 5.0493 3.4026 -0.7835 35 1 3.1617 2.7641 1.0859 36 1 2.7254 1.2834 1.9722 37 1 0.3541 2.0070 2.0137 38 1 0.7903 3.4877 1.1275 39 1 2.3016 4.1508 2.9776 40 1 1.8657 2.6703 3.8645 41 1 -0.5101 4.0586 3.2292 42 1 -1.1400 6.2098 4.7256 43 1 -1.5762 4.7290 5.6117 44 1 -0.0653 5.3907 7.4628 45 1 0.3712 6.8717 6.5772 46 1 -4.8571 6.2828 9.7654 47 1 -6.2645 8.2867 9.9493 48 1 -5.6704 10.3389 8.7300 49 1 -3.6628 10.4081 7.3166 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265145093.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:58:45 Heat of formation + Delta-G solvation = -15.287334 kcal Electronic energy + Delta-G solvation = -28422.846386 eV Core-core repulsion = 24350.648176 eV Total energy + Delta-G solvation = -4072.198210 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -44.33732 -40.80650 -39.00119 -38.19021 -36.30695 -36.01006 -34.56702 -33.80533 -32.73404 -31.65710 -30.58021 -30.06514 -27.60455 -26.34390 -24.98429 -24.15449 -23.18878 -22.60616 -22.39631 -22.02314 -21.18456 -19.09043 -18.61668 -18.47071 -18.09057 -17.71316 -17.10934 -16.83748 -16.74643 -16.44022 -16.01356 -15.53874 -15.34469 -15.16547 -14.97011 -14.80378 -14.41624 -14.26201 -14.05788 -13.98368 -13.60642 -13.44619 -13.23713 -13.17406 -13.12716 -12.72422 -12.70178 -12.56512 -12.54125 -12.37368 -12.33625 -12.25910 -12.13208 -11.92499 -11.54814 -11.45930 -11.23379 -10.98775 -10.47960 -10.08878 -9.84294 -9.49891 -8.53153 -7.79796 -5.43960 -0.37385 0.19339 1.27646 1.38768 1.46370 1.48703 1.55066 1.60197 2.17908 2.51809 2.63255 2.74195 3.25262 3.46038 3.60330 3.68751 3.83197 3.90401 4.00966 4.14958 4.18946 4.20493 4.28524 4.35052 4.42234 4.46262 4.46719 4.57315 4.71697 4.76043 4.79429 4.79733 4.90132 4.92267 5.03643 5.04363 5.06136 5.17147 5.17910 5.31696 5.34661 5.36790 5.44960 5.48835 5.61448 5.70012 5.70810 5.86383 6.49321 6.50716 6.54617 7.20069 7.22437 7.90298 8.42687 9.14669 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.016095 B = 0.001655 C = 0.001608 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1739.261791 B =16911.170611 C =17404.889230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.133 3.867 3 N -0.601 5.601 4 C -0.265 4.265 5 H 0.055 0.945 6 C -0.036 4.036 7 N -0.918 5.918 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.296 1.296 11 H -0.276 1.276 12 C 0.150 3.850 13 C -0.123 4.123 14 C 0.132 3.868 15 N -0.715 5.715 16 C 0.514 3.486 17 O -0.583 6.583 18 C -0.124 4.124 19 C -0.009 4.009 20 C 0.253 3.747 21 N -0.501 5.501 22 C -0.012 4.012 23 C -0.079 4.079 24 C -0.110 4.110 25 C -0.083 4.083 26 C -0.103 4.103 27 C -0.021 4.021 28 O -0.224 6.224 29 H 0.036 0.964 30 H 0.064 0.936 31 H 0.051 0.949 32 H 0.028 0.972 33 H 0.044 0.956 34 H 0.251 0.749 35 H 0.060 0.940 36 H 0.027 0.973 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.045 0.955 40 H 0.061 0.939 41 H 0.415 0.585 42 H 0.120 0.880 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.108 0.892 46 H 0.144 0.856 47 H 0.173 0.827 48 H 0.179 0.821 49 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.871 11.898 19.533 31.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.395 4.395 5 H 0.072 0.928 6 C -0.233 4.233 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.203 1.203 10 H -0.222 1.222 11 H -0.201 1.201 12 C 0.023 3.977 13 C -0.164 4.164 14 C 0.008 3.992 15 N -0.367 5.367 16 C 0.301 3.699 17 O -0.464 6.464 18 C -0.165 4.165 19 C -0.048 4.048 20 C 0.041 3.959 21 N -0.231 5.231 22 C -0.123 4.123 23 C -0.097 4.097 24 C -0.129 4.129 25 C -0.101 4.101 26 C -0.122 4.122 27 C -0.070 4.070 28 O -0.116 6.116 29 H 0.055 0.945 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.078 0.922 36 H 0.046 0.954 37 H 0.088 0.912 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.252 0.748 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.134 0.866 45 H 0.126 0.874 46 H 0.162 0.838 47 H 0.190 0.810 48 H 0.196 0.804 49 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -20.933 11.365 20.138 31.192 hybrid contribution 0.371 1.113 -1.350 1.788 sum -20.562 12.478 18.788 30.521 Atomic orbital electron populations 1.22170 0.97237 1.00756 1.00849 1.21000 0.93868 0.85745 0.98587 1.43981 1.76474 1.09528 1.02287 1.19145 1.04116 1.21339 0.94917 0.92758 1.25847 0.94006 1.03321 1.00142 1.70124 1.03734 1.38102 1.44190 0.85563 0.76542 0.79926 0.79758 1.20304 1.22199 1.20136 1.20710 0.95370 0.96106 0.85513 1.22167 1.00606 0.99532 0.94048 1.21137 0.87638 0.95593 0.94853 1.45992 1.14360 1.53137 1.23229 1.20875 0.90188 0.78292 0.80502 1.90717 1.32112 1.62641 1.60885 1.21558 0.96422 1.01833 0.96677 1.19958 0.88514 0.99394 0.96921 1.26605 0.97091 0.79040 0.93133 1.70622 1.04429 1.31793 1.16227 1.20369 0.98645 0.90278 1.03016 1.20686 0.91162 1.00929 0.96962 1.21543 1.00299 0.91391 0.99628 1.21569 0.94786 0.99886 0.93820 1.20365 0.94305 0.95397 1.02132 1.20880 0.88793 0.99270 0.98089 1.84488 1.36673 1.31216 1.59177 0.94513 0.91705 0.92964 0.95351 0.93718 0.94011 0.92244 0.95444 0.91174 0.92997 0.93672 0.92092 0.74836 0.86232 0.86169 0.86574 0.87355 0.83776 0.80998 0.80398 0.82954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.97 10.21 71.98 0.73 -4.23 16 2 C 0.13 5.42 6.44 86.38 0.56 5.98 16 3 N -0.60 -28.94 2.43 -701.99 -1.71 -30.65 16 4 C -0.26 -14.15 9.45 84.03 0.79 -13.36 16 5 H 0.05 2.90 7.92 -2.91 -0.02 2.88 16 6 C -0.04 -1.95 4.95 84.86 0.42 -1.53 16 7 N -0.92 -53.32 11.47 21.65 0.25 -53.07 16 8 Si 0.95 44.01 29.60 68.60 2.03 46.05 16 9 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 10 H -0.30 -13.80 7.11 99.48 0.71 -13.09 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 C 0.15 6.74 5.33 86.38 0.46 7.20 16 13 C -0.12 -4.35 5.65 30.60 0.17 -4.17 16 14 C 0.13 4.24 5.67 86.38 0.49 4.73 16 15 N -0.72 -17.69 5.56 -463.04 -2.57 -20.27 16 16 C 0.51 12.91 7.83 87.66 0.69 13.60 16 17 O -0.58 -19.59 15.98 -3.04 -0.05 -19.64 16 18 C -0.12 -2.11 5.68 29.85 0.17 -1.94 16 19 C -0.01 -0.18 5.13 29.85 0.15 -0.03 16 20 C 0.25 5.64 7.49 88.39 0.66 6.30 16 21 N -0.50 -12.45 11.34 -296.28 -3.36 -15.81 16 22 C -0.01 -0.27 7.24 39.32 0.28 0.01 16 23 C -0.08 -1.21 10.10 22.46 0.23 -0.99 16 24 C -0.11 -0.96 10.02 22.25 0.22 -0.74 16 25 C -0.08 -0.67 10.03 22.31 0.22 -0.44 16 26 C -0.10 -1.40 10.06 22.29 0.22 -1.18 16 27 C -0.02 -0.44 7.43 22.88 0.17 -0.27 16 28 O -0.22 -5.17 10.77 -9.94 -0.11 -5.28 16 29 H 0.04 1.29 8.14 -2.38 -0.02 1.27 16 30 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 31 H 0.05 1.62 6.64 -2.39 -0.02 1.60 16 32 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 33 H 0.04 1.69 7.83 -2.38 -0.02 1.67 16 34 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 35 H 0.06 3.14 5.52 -2.39 -0.01 3.13 16 36 H 0.03 1.18 7.86 -2.39 -0.02 1.17 16 37 H 0.07 2.22 6.64 -2.39 -0.02 2.20 16 38 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.42 7.80 8.47 -92.71 -0.79 7.02 16 42 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 43 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 44 H 0.12 2.30 8.10 -2.39 -0.02 2.28 16 45 H 0.11 2.03 8.10 -2.39 -0.02 2.01 16 46 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 47 H 0.17 0.27 8.06 -2.91 -0.02 0.25 16 48 H 0.18 0.06 8.06 -2.91 -0.02 0.04 16 49 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 Total: -1.00 -73.59 409.89 1.31 -72.28 By element: Atomic # 1 Polarization: 17.28 SS G_CDS: 0.17 Total: 17.45 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: 6.65 Total: 8.94 kcal Atomic # 7 Polarization: -112.41 SS G_CDS: -7.39 Total: -119.80 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.16 Total: -24.92 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.05 kcal Total: -73.59 1.31 -72.28 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265145093.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.991 kcal (2) G-P(sol) polarization free energy of solvation -73.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.595 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds