Wall clock time and date at job start Wed Apr 1 2020 03:59:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47410 * 2 1 4 4 C 1.36939 * 119.99674 * 275.31557 * 3 2 1 5 5 H 1.07998 * 120.00157 * 37.57595 * 4 3 2 6 6 C 1.38810 * 119.99540 * 217.56946 * 4 3 2 7 7 N 1.31623 * 120.00387 * 21.44202 * 6 4 3 8 8 Si 1.86798 * 120.00047 * 201.43199 * 6 4 3 9 9 H 1.48500 * 109.47069 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47208 * 120.00565 * 8 6 4 11 11 H 1.48504 * 109.47503 * 240.00431 * 8 6 4 12 12 C 1.46499 * 120.00105 * 95.30899 * 3 2 1 13 13 C 1.52991 * 109.47349 * 270.00462 * 12 3 2 14 14 C 1.52998 * 109.47287 * 179.97438 * 13 12 3 15 15 N 1.46501 * 109.47675 * 179.97438 * 14 13 12 16 16 C 1.34770 * 120.00569 * 180.02562 * 15 14 13 17 17 O 1.21284 * 119.99771 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00313 * 180.02562 * 16 15 14 19 19 H 1.08994 * 109.36397 * 59.99477 * 18 16 15 20 20 C 1.52655 * 109.25175 * 300.32344 * 18 16 15 21 21 N 1.46121 * 110.99117 * 290.38610 * 20 18 16 22 22 C 1.34671 * 121.05251 * 319.83680 * 21 20 18 23 23 O 1.21555 * 120.33283 * 187.95071 * 22 21 20 24 24 C 1.47815 * 119.33492 * 7.92662 * 22 21 20 25 25 C 1.39315 * 120.93999 * 193.70083 * 24 22 21 26 26 C 1.38063 * 119.60907 * 178.31312 * 25 24 22 27 27 C 1.38378 * 120.17083 * 0.02562 * 26 25 24 28 28 C 1.38413 * 120.41635 * 0.34028 * 27 26 25 29 29 C 1.37844 * 119.96654 * 359.92938 * 28 27 26 30 30 H 1.08998 * 109.47422 * 59.99345 * 1 2 3 31 31 H 1.08993 * 109.47503 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46797 * 300.00068 * 1 2 3 33 33 H 1.09005 * 109.46797 * 239.99932 * 2 1 3 34 34 H 1.08998 * 109.47422 * 120.00655 * 2 1 3 35 35 H 0.96996 * 120.00128 * 179.97438 * 7 6 4 36 36 H 1.08998 * 109.47110 * 149.99997 * 12 3 2 37 37 H 1.09001 * 109.46438 * 30.00459 * 12 3 2 38 38 H 1.08998 * 109.47394 * 59.99710 * 13 12 3 39 39 H 1.08997 * 109.47460 * 299.99944 * 13 12 3 40 40 H 1.08998 * 109.46992 * 59.99645 * 14 13 12 41 41 H 1.09004 * 109.47335 * 300.00218 * 14 13 12 42 42 H 0.97008 * 119.99390 * 0.02562 * 15 14 13 43 43 H 1.09002 * 109.17663 * 50.78026 * 20 18 16 44 44 H 1.09003 * 109.17273 * 170.00023 * 20 18 16 45 45 H 0.96992 * 119.47127 * 139.83056 * 21 20 18 46 46 H 1.08005 * 120.19642 * 358.28901 * 25 24 22 47 47 H 1.07998 * 119.91205 * 179.97438 * 26 25 24 48 48 H 1.07995 * 119.79451 * 180.36019 * 27 26 25 49 49 H 1.07999 * 120.01995 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1430 2.0633 -1.1809 5 1 1.4104 1.9278 -1.9627 6 6 3.2110 2.9290 -1.3728 7 7 4.3027 2.7980 -0.6493 8 14 3.0991 4.2796 -2.6583 9 1 1.7769 4.2142 -3.3312 10 1 3.2549 5.6023 -2.0015 11 1 4.1764 4.0965 -3.6640 12 6 2.3733 2.0327 1.2633 13 6 1.1428 2.7382 1.8366 14 6 1.5132 3.4180 3.1562 15 7 0.3351 4.0942 3.7050 16 6 0.4249 4.7652 4.8703 17 8 1.4811 4.8090 5.4649 18 6 -0.7871 5.4602 5.4350 19 1 -1.5743 4.7274 5.6116 20 6 -1.2811 6.5026 4.4351 21 7 -0.3435 7.6191 4.3367 22 6 0.2626 8.1158 5.4319 23 8 0.9261 9.1316 5.3589 24 6 0.1126 7.4135 6.7239 25 6 0.4754 8.0288 7.9200 26 6 0.2911 7.3607 9.1141 27 6 -0.2504 6.0873 9.1222 28 6 -0.6053 5.4692 7.9357 29 6 -0.4211 6.1235 6.7365 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 5.0491 3.4027 -0.7837 36 1 3.1618 2.7641 1.0859 37 1 2.7256 1.2832 1.9720 38 1 0.3543 2.0068 2.0139 39 1 0.7904 3.4876 1.1278 40 1 2.3019 4.1494 2.9793 41 1 1.8653 2.6684 3.8649 42 1 -0.5097 4.0588 3.2295 43 1 -1.3873 6.0369 3.4554 44 1 -2.2518 6.8779 4.7593 45 1 -0.1547 8.0085 3.4687 46 1 0.8987 9.0224 7.9132 47 1 0.5710 7.8330 10.0442 48 1 -0.3974 5.5727 10.0602 49 1 -1.0270 4.4750 7.9494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266051588.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:57 Heat of formation + Delta-G solvation = -32.197601 kcal Electronic energy + Delta-G solvation = -30224.309819 eV Core-core repulsion = 26151.378325 eV Total energy + Delta-G solvation = -4072.931494 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.31567 -39.33602 -38.33979 -36.55623 -36.16574 -34.86684 -32.54877 -31.89349 -31.39629 -31.28410 -29.56449 -28.44609 -25.57538 -24.69081 -24.22794 -23.63569 -22.18116 -21.12124 -20.94590 -20.18479 -19.28907 -17.81660 -17.51321 -17.16409 -16.74525 -16.02994 -15.97380 -15.38397 -15.17043 -15.07476 -14.76384 -14.64504 -14.18607 -13.98028 -13.91579 -13.65303 -13.45251 -13.29300 -12.94524 -12.72894 -12.51865 -12.46888 -12.40038 -11.79437 -11.62875 -11.47026 -11.36491 -11.18647 -11.06339 -10.79514 -10.62629 -10.47939 -10.17115 -10.10151 -9.92687 -9.68854 -9.58354 -9.44440 -9.20379 -9.02650 -8.93637 -8.50511 -6.59722 -5.81379 -3.40864 0.58963 1.05247 2.54620 2.62803 2.93341 3.15687 3.32445 3.41848 3.43145 3.66151 3.98915 4.22196 4.24536 4.44578 4.54569 4.63898 4.73505 4.87110 4.91203 5.07069 5.17350 5.21567 5.23288 5.36424 5.50073 5.59674 5.67564 5.79031 5.93116 6.00241 6.03504 6.07202 6.15228 6.22630 6.31026 6.37518 6.41167 6.51494 6.53781 6.63897 6.69435 6.71944 6.87570 6.89745 7.04280 7.13446 7.51485 7.64365 7.79907 7.96538 8.20585 8.49570 9.16830 9.79118 10.37889 11.18054 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.002588 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.383467 B =10815.496912 C =11886.465020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.140 3.860 3 N -0.585 5.585 4 C -0.261 4.261 5 H 0.059 0.941 6 C 0.013 3.987 7 N -0.885 5.885 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.289 1.289 12 C 0.151 3.849 13 C -0.145 4.145 14 C 0.121 3.879 15 N -0.723 5.723 16 C 0.513 3.487 17 O -0.526 6.526 18 C -0.094 4.094 19 H 0.127 0.873 20 C 0.122 3.878 21 N -0.726 5.726 22 C 0.569 3.431 23 O -0.533 6.533 24 C -0.122 4.122 25 C -0.058 4.058 26 C -0.128 4.128 27 C -0.092 4.092 28 C -0.113 4.113 29 C -0.026 4.026 30 H 0.048 0.952 31 H 0.035 0.965 32 H 0.042 0.958 33 H 0.043 0.957 34 H 0.033 0.967 35 H 0.255 0.745 36 H 0.095 0.905 37 H 0.025 0.975 38 H 0.051 0.949 39 H 0.064 0.936 40 H 0.066 0.934 41 H 0.062 0.938 42 H 0.397 0.603 43 H 0.096 0.904 44 H 0.082 0.918 45 H 0.409 0.591 46 H 0.136 0.864 47 H 0.130 0.870 48 H 0.128 0.872 49 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.826 4.898 17.062 23.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.013 3.987 3 N -0.305 5.305 4 C -0.390 4.390 5 H 0.077 0.923 6 C -0.188 4.188 7 N -0.527 5.527 8 Si 0.723 3.277 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.024 3.976 13 C -0.186 4.186 14 C -0.002 4.002 15 N -0.374 5.374 16 C 0.297 3.703 17 O -0.401 6.401 18 C -0.116 4.116 19 H 0.145 0.855 20 C -0.003 4.003 21 N -0.379 5.379 22 C 0.357 3.643 23 O -0.410 6.410 24 C -0.126 4.126 25 C -0.077 4.077 26 C -0.146 4.146 27 C -0.110 4.110 28 C -0.132 4.132 29 C -0.027 4.027 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.061 0.939 34 H 0.051 0.949 35 H 0.065 0.935 36 H 0.112 0.888 37 H 0.043 0.957 38 H 0.070 0.930 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.081 0.919 42 H 0.231 0.769 43 H 0.114 0.886 44 H 0.100 0.900 45 H 0.246 0.754 46 H 0.154 0.846 47 H 0.148 0.852 48 H 0.146 0.854 49 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -14.546 5.428 17.592 23.463 hybrid contribution -0.404 0.661 -1.267 1.485 sum -14.949 6.090 16.325 22.958 Atomic orbital electron populations 1.22364 1.00176 0.98884 1.01055 1.20849 0.91666 0.87417 0.98732 1.43753 1.76058 1.08177 1.02493 1.19001 1.04682 1.21197 0.94160 0.92292 1.25196 0.94226 1.01311 0.98031 1.70002 1.03189 1.37215 1.42313 0.86384 0.77679 0.82333 0.81305 1.20106 1.21410 1.21597 1.20787 0.94425 0.96659 0.85778 1.22531 1.02428 0.99842 0.93773 1.21507 0.86937 0.96107 0.95670 1.46145 1.14620 1.53667 1.23000 1.20170 0.89512 0.79189 0.81384 1.90758 1.29767 1.60215 1.59365 1.20727 0.98711 0.98405 0.93764 0.85515 1.21310 0.92581 0.86580 0.99867 1.45590 1.46477 1.35593 1.10271 1.18218 0.78408 0.83345 0.84336 1.90807 1.40409 1.24077 1.85733 1.19626 1.03994 0.95123 0.93817 1.21185 0.95527 1.00155 0.90845 1.21173 1.00190 0.95305 0.97958 1.21321 0.96642 0.94884 0.98130 1.20899 1.00949 0.99775 0.91528 1.19329 0.96635 0.93155 0.93601 0.93265 0.94634 0.93853 0.93888 0.94863 0.93518 0.88759 0.95697 0.93025 0.91729 0.91529 0.91923 0.76865 0.88554 0.89999 0.75363 0.84641 0.85219 0.85384 0.85332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.82 10.21 37.16 0.38 -2.44 16 2 C 0.14 2.84 6.44 -4.04 -0.03 2.82 16 3 N -0.58 -13.85 2.43 -173.24 -0.42 -14.27 16 4 C -0.26 -6.84 9.45 -15.06 -0.14 -6.98 16 5 H 0.06 1.56 7.92 -52.49 -0.42 1.14 16 6 C 0.01 0.35 4.95 -17.43 -0.09 0.26 16 7 N -0.89 -25.05 11.47 55.49 0.64 -24.41 16 8 Si 0.89 21.09 29.60 -169.99 -5.03 16.06 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.15 3.31 5.33 -4.05 -0.02 3.29 16 13 C -0.15 -2.52 5.65 -26.74 -0.15 -2.67 16 14 C 0.12 1.92 5.67 -4.04 -0.02 1.89 16 15 N -0.72 -8.83 5.37 -60.30 -0.32 -9.15 16 16 C 0.51 6.76 7.01 -10.99 -0.08 6.69 16 17 O -0.53 -9.52 16.03 5.55 0.09 -9.43 16 18 C -0.09 -0.84 2.74 -93.15 -0.25 -1.09 16 19 H 0.13 0.67 8.07 -51.93 -0.42 0.25 16 20 C 0.12 0.88 6.36 -4.42 -0.03 0.86 16 21 N -0.73 -7.80 5.43 -61.73 -0.34 -8.13 16 22 C 0.57 8.05 7.81 -12.39 -0.10 7.95 16 23 O -0.53 -9.31 17.37 5.32 0.09 -9.22 16 24 C -0.12 -1.56 5.80 -105.07 -0.61 -2.17 16 25 C -0.06 -0.66 9.64 -39.24 -0.38 -1.04 16 26 C -0.13 -1.15 10.04 -39.59 -0.40 -1.55 16 27 C -0.09 -0.76 10.04 -39.47 -0.40 -1.16 16 28 C -0.11 -1.04 9.72 -39.66 -0.39 -1.43 16 29 C -0.03 -0.28 4.17 -104.31 -0.43 -0.72 16 30 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 31 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.04 0.70 6.64 -51.93 -0.34 0.36 16 33 H 0.04 0.91 8.08 -51.93 -0.42 0.49 16 34 H 0.03 0.64 7.83 -51.93 -0.41 0.23 16 35 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 36 H 0.09 2.41 5.52 -51.93 -0.29 2.12 16 37 H 0.02 0.53 7.86 -51.93 -0.41 0.12 16 38 H 0.05 0.83 6.64 -51.93 -0.34 0.48 16 39 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.07 1.22 8.14 -51.93 -0.42 0.79 16 41 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 42 H 0.40 3.58 7.76 -40.82 -0.32 3.26 16 43 H 0.10 0.50 7.25 -51.93 -0.38 0.12 16 44 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 45 H 0.41 4.06 8.92 -40.82 -0.36 3.70 16 46 H 0.14 1.49 7.78 -52.48 -0.41 1.08 16 47 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 48 H 0.13 0.72 8.06 -52.49 -0.42 0.29 16 49 H 0.13 0.89 8.06 -52.49 -0.42 0.46 16 LS Contribution 401.65 15.07 6.05 6.05 Total: -1.00 -35.22 401.65 -9.82 -45.04 By element: Atomic # 1 Polarization: 12.41 SS G_CDS: -7.45 Total: 4.96 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: -3.13 Total: 2.50 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: -0.44 Total: -55.96 kcal Atomic # 8 Polarization: -18.83 SS G_CDS: 0.18 Total: -18.65 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.22 -9.82 -45.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266051588.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.843 kcal (2) G-P(sol) polarization free energy of solvation -35.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.822 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.041 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds