Wall clock time and date at job start Wed Apr 1 2020 03:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46503 * 109.47410 * 2 1 4 4 C 1.36939 * 119.99674 * 275.31557 * 3 2 1 5 5 H 1.07998 * 120.00157 * 37.57595 * 4 3 2 6 6 C 1.38810 * 119.99540 * 217.56946 * 4 3 2 7 7 N 1.31623 * 120.00387 * 21.44202 * 6 4 3 8 8 Si 1.86798 * 120.00047 * 201.43199 * 6 4 3 9 9 H 1.48500 * 109.47069 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47208 * 120.00565 * 8 6 4 11 11 H 1.48504 * 109.47503 * 240.00431 * 8 6 4 12 12 C 1.46499 * 120.00105 * 95.30899 * 3 2 1 13 13 C 1.52991 * 109.47349 * 270.00462 * 12 3 2 14 14 C 1.52998 * 109.47287 * 179.97438 * 13 12 3 15 15 N 1.46501 * 109.47675 * 179.97438 * 14 13 12 16 16 C 1.34770 * 120.00569 * 180.02562 * 15 14 13 17 17 O 1.21284 * 119.99771 * 359.97438 * 16 15 14 18 18 C 1.50698 * 120.00313 * 180.02562 * 16 15 14 19 19 H 1.08994 * 109.36397 * 59.99477 * 18 16 15 20 20 C 1.52655 * 109.25175 * 300.32344 * 18 16 15 21 21 N 1.46121 * 110.99117 * 290.38610 * 20 18 16 22 22 C 1.34671 * 121.05251 * 319.83680 * 21 20 18 23 23 O 1.21555 * 120.33283 * 187.95071 * 22 21 20 24 24 C 1.47815 * 119.33492 * 7.92662 * 22 21 20 25 25 C 1.39315 * 120.93999 * 193.70083 * 24 22 21 26 26 C 1.38063 * 119.60907 * 178.31312 * 25 24 22 27 27 C 1.38378 * 120.17083 * 0.02562 * 26 25 24 28 28 C 1.38413 * 120.41635 * 0.34028 * 27 26 25 29 29 C 1.37844 * 119.96654 * 359.92938 * 28 27 26 30 30 H 1.08998 * 109.47422 * 59.99345 * 1 2 3 31 31 H 1.08993 * 109.47503 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.46797 * 300.00068 * 1 2 3 33 33 H 1.09005 * 109.46797 * 239.99932 * 2 1 3 34 34 H 1.08998 * 109.47422 * 120.00655 * 2 1 3 35 35 H 0.96996 * 120.00128 * 179.97438 * 7 6 4 36 36 H 1.08998 * 109.47110 * 149.99997 * 12 3 2 37 37 H 1.09001 * 109.46438 * 30.00459 * 12 3 2 38 38 H 1.08998 * 109.47394 * 59.99710 * 13 12 3 39 39 H 1.08997 * 109.47460 * 299.99944 * 13 12 3 40 40 H 1.08998 * 109.46992 * 59.99645 * 14 13 12 41 41 H 1.09004 * 109.47335 * 300.00218 * 14 13 12 42 42 H 0.97008 * 119.99390 * 0.02562 * 15 14 13 43 43 H 1.09002 * 109.17663 * 50.78026 * 20 18 16 44 44 H 1.09003 * 109.17273 * 170.00023 * 20 18 16 45 45 H 0.96992 * 119.47127 * 139.83056 * 21 20 18 46 46 H 1.08005 * 120.19642 * 358.28901 * 25 24 22 47 47 H 1.07998 * 119.91205 * 179.97438 * 26 25 24 48 48 H 1.07995 * 119.79451 * 180.36019 * 27 26 25 49 49 H 1.07999 * 120.01995 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1430 2.0633 -1.1809 5 1 1.4104 1.9278 -1.9627 6 6 3.2110 2.9290 -1.3728 7 7 4.3027 2.7980 -0.6493 8 14 3.0991 4.2796 -2.6583 9 1 1.7769 4.2142 -3.3312 10 1 3.2549 5.6023 -2.0015 11 1 4.1764 4.0965 -3.6640 12 6 2.3733 2.0327 1.2633 13 6 1.1428 2.7382 1.8366 14 6 1.5132 3.4180 3.1562 15 7 0.3351 4.0942 3.7050 16 6 0.4249 4.7652 4.8703 17 8 1.4811 4.8090 5.4649 18 6 -0.7871 5.4602 5.4350 19 1 -1.5743 4.7274 5.6116 20 6 -1.2811 6.5026 4.4351 21 7 -0.3435 7.6191 4.3367 22 6 0.2626 8.1158 5.4319 23 8 0.9261 9.1316 5.3589 24 6 0.1126 7.4135 6.7239 25 6 0.4754 8.0288 7.9200 26 6 0.2911 7.3607 9.1141 27 6 -0.2504 6.0873 9.1222 28 6 -0.6053 5.4692 7.9357 29 6 -0.4211 6.1235 6.7365 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 5.0491 3.4027 -0.7837 36 1 3.1618 2.7641 1.0859 37 1 2.7256 1.2832 1.9720 38 1 0.3543 2.0068 2.0139 39 1 0.7904 3.4876 1.1278 40 1 2.3019 4.1494 2.9793 41 1 1.8653 2.6684 3.8649 42 1 -0.5097 4.0588 3.2295 43 1 -1.3873 6.0369 3.4554 44 1 -2.2518 6.8779 4.7593 45 1 -0.1547 8.0085 3.4687 46 1 0.8987 9.0224 7.9132 47 1 0.5710 7.8330 10.0442 48 1 -0.3974 5.5727 10.0602 49 1 -1.0270 4.4750 7.9494 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266051588.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:59:56 Heat of formation + Delta-G solvation = -56.884312 kcal Electronic energy + Delta-G solvation = -30225.380315 eV Core-core repulsion = 26151.378325 eV Total energy + Delta-G solvation = -4074.001990 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.17694 -40.41877 -39.18976 -38.18426 -37.10678 -36.19996 -33.81375 -33.43560 -32.66973 -32.04774 -30.59310 -29.89980 -27.12935 -25.77341 -25.04986 -25.00168 -23.09607 -22.51455 -22.09433 -21.73539 -20.21705 -18.70466 -18.55874 -18.38407 -18.03582 -17.14651 -17.03122 -16.81894 -16.28014 -16.18144 -15.91156 -15.66626 -15.47037 -15.42943 -15.00013 -14.77420 -14.63034 -14.26039 -14.18862 -14.04554 -13.58218 -13.35581 -13.32373 -13.21109 -13.14900 -12.77145 -12.70242 -12.57633 -12.50666 -12.29735 -12.11368 -12.05343 -11.91572 -11.44935 -11.23541 -11.16525 -11.03172 -10.50435 -10.33290 -10.10380 -9.94416 -9.77837 -8.54364 -7.80741 -5.44867 -0.21165 0.32185 1.42953 1.47512 1.55581 1.56270 1.72491 2.07273 2.20943 2.50518 2.85274 3.24619 3.28798 3.45264 3.58279 3.67848 3.80476 3.89784 4.14227 4.16898 4.30257 4.32658 4.35173 4.44550 4.47622 4.54244 4.55959 4.65491 4.74395 4.78467 4.82329 4.91181 4.98422 5.03893 5.06783 5.18923 5.28447 5.36539 5.36753 5.42437 5.45770 5.48571 5.63040 5.70947 5.72442 5.86007 5.92538 6.01980 6.48270 6.54543 7.01210 7.19272 7.23144 7.89856 8.41716 9.13483 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013904 B = 0.002588 C = 0.002355 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2013.383467 B =10815.496912 C =11886.465020 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.133 3.867 3 N -0.602 5.602 4 C -0.258 4.258 5 H 0.057 0.943 6 C -0.038 4.038 7 N -0.919 5.919 8 Si 0.951 3.049 9 H -0.262 1.262 10 H -0.293 1.293 11 H -0.295 1.295 12 C 0.149 3.851 13 C -0.120 4.120 14 C 0.135 3.865 15 N -0.708 5.708 16 C 0.511 3.489 17 O -0.581 6.581 18 C -0.084 4.084 19 H 0.177 0.823 20 C 0.114 3.886 21 N -0.722 5.722 22 C 0.556 3.444 23 O -0.588 6.588 24 C -0.153 4.153 25 C -0.082 4.082 26 C -0.129 4.129 27 C -0.088 4.088 28 C -0.117 4.117 29 C -0.038 4.038 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.055 0.945 33 H 0.027 0.973 34 H 0.044 0.956 35 H 0.249 0.751 36 H 0.055 0.945 37 H 0.025 0.975 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.033 0.967 41 H 0.059 0.941 42 H 0.417 0.583 43 H 0.124 0.876 44 H 0.116 0.884 45 H 0.410 0.590 46 H 0.123 0.877 47 H 0.154 0.846 48 H 0.162 0.838 49 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.595 3.258 18.125 26.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.388 4.388 5 H 0.075 0.925 6 C -0.235 4.235 7 N -0.563 5.563 8 Si 0.780 3.220 9 H -0.186 1.186 10 H -0.220 1.220 11 H -0.222 1.222 12 C 0.022 3.978 13 C -0.160 4.160 14 C 0.010 3.990 15 N -0.361 5.361 16 C 0.298 3.702 17 O -0.460 6.460 18 C -0.105 4.105 19 H 0.194 0.806 20 C -0.010 4.010 21 N -0.373 5.373 22 C 0.345 3.655 23 O -0.469 6.469 24 C -0.156 4.156 25 C -0.101 4.101 26 C -0.146 4.146 27 C -0.106 4.106 28 C -0.134 4.134 29 C -0.039 4.039 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.074 0.926 33 H 0.045 0.955 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.073 0.927 37 H 0.044 0.956 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.051 0.949 41 H 0.077 0.923 42 H 0.255 0.745 43 H 0.142 0.858 44 H 0.134 0.866 45 H 0.247 0.753 46 H 0.141 0.859 47 H 0.172 0.828 48 H 0.180 0.820 49 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -18.417 3.741 18.622 26.457 hybrid contribution 0.777 1.052 -1.536 2.017 sum -17.640 4.792 17.086 25.021 Atomic orbital electron populations 1.22155 0.96933 1.00813 1.01009 1.21009 0.94088 0.85611 0.98513 1.44006 1.76456 1.09605 1.02243 1.19205 1.03922 1.20872 0.94842 0.92503 1.25844 0.94103 1.03451 1.00088 1.70140 1.03849 1.38083 1.44278 0.85468 0.77880 0.79562 0.79106 1.18628 1.22038 1.22188 1.20690 0.95499 0.96016 0.85553 1.22134 1.00540 0.99619 0.93703 1.21078 0.87584 0.95250 0.95069 1.45878 1.14269 1.52980 1.22967 1.20967 0.90184 0.78304 0.80735 1.90745 1.32311 1.62056 1.60905 1.20848 0.97540 0.99236 0.92915 0.80556 1.21739 0.92789 0.85312 1.01129 1.45714 1.46122 1.36035 1.09460 1.18686 0.78041 0.82972 0.85760 1.90754 1.43033 1.26454 1.86690 1.19753 1.06051 0.96527 0.93291 1.21319 0.96564 1.00296 0.91919 1.21496 0.99484 0.95768 0.97878 1.21783 0.94947 0.94376 0.99471 1.21339 1.00228 1.00792 0.91060 1.19581 0.96677 0.92456 0.95232 0.94463 0.91720 0.92643 0.95492 0.93795 0.94209 0.92689 0.95620 0.90533 0.92704 0.94872 0.92292 0.74484 0.85840 0.86618 0.75291 0.85891 0.82786 0.82044 0.82415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.63 10.21 71.98 0.73 -3.89 16 2 C 0.13 5.22 6.44 86.38 0.56 5.78 16 3 N -0.60 -28.27 2.43 -702.02 -1.71 -29.98 16 4 C -0.26 -13.52 9.45 84.03 0.79 -12.73 16 5 H 0.06 2.97 7.92 -2.91 -0.02 2.95 16 6 C -0.04 -2.05 4.95 84.86 0.42 -1.63 16 7 N -0.92 -53.67 11.47 21.65 0.25 -53.42 16 8 Si 0.95 43.96 29.60 68.60 2.03 46.00 16 9 H -0.26 -11.39 7.11 99.48 0.71 -10.68 16 10 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 11 H -0.29 -13.78 7.11 99.48 0.71 -13.08 16 12 C 0.15 6.59 5.33 86.38 0.46 7.05 16 13 C -0.12 -3.98 5.65 30.59 0.17 -3.81 16 14 C 0.14 4.19 5.67 86.38 0.49 4.68 16 15 N -0.71 -15.62 5.37 -463.07 -2.49 -18.11 16 16 C 0.51 12.51 7.01 87.66 0.61 13.13 16 17 O -0.58 -21.02 16.03 -3.04 -0.05 -21.07 16 18 C -0.08 -1.21 2.74 -12.43 -0.03 -1.25 16 19 H 0.18 0.80 8.07 -2.39 -0.02 0.78 16 20 C 0.11 1.28 6.36 86.34 0.55 1.83 16 21 N -0.72 -15.16 5.43 -467.54 -2.54 -17.70 16 22 C 0.56 16.42 7.81 86.79 0.68 17.10 16 23 O -0.59 -22.22 17.37 -3.89 -0.07 -22.29 16 24 C -0.15 -3.94 5.80 -20.15 -0.12 -4.06 16 25 C -0.08 -1.94 9.64 22.49 0.22 -1.72 16 26 C -0.13 -2.14 10.04 22.26 0.22 -1.92 16 27 C -0.09 -1.20 10.04 22.34 0.22 -0.98 16 28 C -0.12 -1.76 9.72 22.22 0.22 -1.54 16 29 C -0.04 -0.75 4.17 -19.66 -0.08 -0.83 16 30 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.05 1.57 6.64 -2.38 -0.02 1.55 16 33 H 0.03 1.12 8.08 -2.38 -0.02 1.10 16 34 H 0.04 1.61 7.83 -2.39 -0.02 1.59 16 35 H 0.25 14.20 8.31 -92.71 -0.77 13.43 16 36 H 0.06 2.92 5.52 -2.39 -0.01 2.90 16 37 H 0.03 1.09 7.86 -2.39 -0.02 1.07 16 38 H 0.08 2.18 6.64 -2.39 -0.02 2.17 16 39 H 0.05 1.94 8.14 -2.39 -0.02 1.92 16 40 H 0.03 1.25 8.14 -2.39 -0.02 1.24 16 41 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 42 H 0.42 5.85 7.76 -92.70 -0.72 5.13 16 43 H 0.12 0.74 7.25 -2.39 -0.02 0.72 16 44 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 45 H 0.41 8.16 8.92 -92.71 -0.83 7.33 16 46 H 0.12 3.04 7.78 -2.91 -0.02 3.01 16 47 H 0.15 1.67 8.06 -2.91 -0.02 1.64 16 48 H 0.16 1.09 8.06 -2.91 -0.02 1.07 16 49 H 0.16 1.39 8.06 -2.91 -0.02 1.37 16 Total: -1.00 -82.80 401.65 0.98 -81.82 By element: Atomic # 1 Polarization: 20.11 SS G_CDS: -0.57 Total: 19.54 kcal Atomic # 6 Polarization: 9.09 SS G_CDS: 6.12 Total: 15.21 kcal Atomic # 7 Polarization: -112.72 SS G_CDS: -6.49 Total: -119.21 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -0.12 Total: -43.36 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 46.00 kcal Total: -82.80 0.98 -81.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266051588.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.937 kcal (2) G-P(sol) polarization free energy of solvation -82.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds