Wall clock time and date at job start Wed Apr 1 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42905 * 109.47078 * 2 1 4 4 C 1.35675 * 117.00173 * 180.02562 * 3 2 1 5 5 C 1.38919 * 119.68598 * 180.02562 * 4 3 2 6 6 C 1.38378 * 119.11157 * 179.97438 * 5 4 3 7 7 C 1.38825 * 118.48734 * 359.73582 * 6 5 4 8 8 C 1.38047 * 119.28531 * 0.52722 * 7 6 5 9 9 C 1.50704 * 119.58020 * 179.73544 * 8 7 6 10 10 C 1.50700 * 109.47341 * 124.72837 * 9 8 7 11 11 O 1.21285 * 119.99789 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00000 * 179.97438 * 10 9 8 13 13 C 1.46498 * 119.99813 * 179.97438 * 12 10 9 14 14 C 1.52998 * 109.46995 * 180.02562 * 13 12 10 15 15 H 1.09004 * 115.49465 * 29.62565 * 14 13 12 16 16 C 1.52996 * 117.44727 * 244.24139 * 14 13 12 17 17 H 1.09003 * 119.54049 * 4.12257 * 16 14 13 18 18 C 1.54790 * 117.94164 * 160.75517 * 16 14 13 19 19 N 1.48150 * 104.41815 * 87.46648 * 18 16 14 20 20 C 1.36933 * 127.83528 * 140.36727 * 19 18 16 21 21 H 1.07998 * 120.00773 * 338.37365 * 20 19 18 22 22 C 1.38819 * 119.99655 * 158.37879 * 20 19 18 23 23 N 1.31615 * 120.00000 * 335.54352 * 22 20 19 24 24 Si 1.86803 * 120.00006 * 155.55040 * 22 20 19 25 25 H 1.48499 * 109.47195 * 89.99634 * 24 22 20 26 26 H 1.48507 * 109.46994 * 329.99965 * 24 22 20 27 27 H 1.48494 * 109.47086 * 210.00046 * 24 22 20 28 28 C 1.48141 * 104.32133 * 320.11100 * 19 18 16 29 29 C 1.53002 * 117.44392 * 175.00034 * 14 13 12 30 30 H 1.08999 * 120.26386 * 356.17596 * 29 14 13 31 31 N 1.31966 * 120.83632 * 359.45600 * 8 7 6 32 32 H 1.09006 * 109.47362 * 299.99731 * 1 2 3 33 33 H 1.08999 * 109.47613 * 59.99603 * 1 2 3 34 34 H 1.08998 * 109.46872 * 180.02562 * 1 2 3 35 35 H 1.08993 * 109.47664 * 240.00453 * 2 1 3 36 36 H 1.09003 * 109.47605 * 119.99644 * 2 1 3 37 37 H 1.07999 * 120.44308 * 359.95644 * 5 4 3 38 38 H 1.08007 * 120.75699 * 180.02562 * 6 5 4 39 39 H 1.08001 * 120.35633 * 180.26202 * 7 6 5 40 40 H 1.08998 * 109.47261 * 4.72157 * 9 8 7 41 41 H 1.09000 * 109.46777 * 244.72731 * 9 8 7 42 42 H 0.96997 * 120.00357 * 0.02562 * 12 10 9 43 43 H 1.09002 * 109.47094 * 60.01006 * 13 12 10 44 44 H 1.09000 * 109.47497 * 300.00407 * 13 12 10 45 45 H 1.08999 * 110.54193 * 328.72949 * 18 16 14 46 46 H 1.08999 * 110.46666 * 206.16921 * 18 16 14 47 47 H 0.97003 * 120.00000 * 354.38840 * 23 22 20 48 48 H 1.09001 * 110.40844 * 158.63097 * 28 19 18 49 49 H 1.09003 * 110.40914 * 280.93898 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.3513 1.5251 -0.0005 5 6 3.8752 2.8118 0.0000 6 6 5.2488 2.9794 0.0000 7 6 6.0539 1.8484 0.0050 8 6 5.4646 0.6000 -0.0011 9 6 6.3322 -0.6322 -0.0017 10 6 5.9552 -1.5127 1.1618 11 8 5.0695 -1.1728 1.9174 12 7 6.6023 -2.6777 1.3626 13 6 6.2361 -3.5333 2.4940 14 6 7.1169 -4.7843 2.4933 15 1 8.1137 -4.6561 2.0713 16 6 6.4270 -6.1324 2.2753 17 1 5.3585 -6.1610 2.0619 18 6 7.2988 -7.3284 1.8220 19 7 7.7980 -7.9207 3.0848 20 6 7.9406 -9.2476 3.3915 21 1 7.3750 -9.9910 2.8496 22 6 8.8124 -9.6372 4.3991 23 7 9.8260 -8.8646 4.7276 24 14 8.5471 -11.2583 5.2886 25 1 9.2789 -12.3380 4.5788 26 1 7.0969 -11.5773 5.3142 27 1 9.0543 -11.1483 6.6799 28 6 8.1137 -6.7516 3.9382 29 6 6.9683 -5.7520 3.6691 30 1 6.3026 -5.5113 4.4980 31 7 4.1512 0.4720 -0.0010 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 1.8934 -0.5137 -0.8899 36 1 1.8934 -0.5138 0.8900 37 1 3.2192 3.6697 0.0001 38 1 5.6847 3.9676 0.0008 39 1 7.1296 1.9442 0.0094 40 1 7.3785 -0.3399 0.0878 41 1 6.1862 -1.1789 -0.9333 42 1 7.3109 -2.9494 0.7586 43 1 5.1897 -3.8253 2.4050 44 1 6.3829 -2.9866 3.4255 45 1 8.1314 -6.9840 1.2086 46 1 6.6965 -8.0532 1.2742 47 1 10.0120 -8.0636 4.2129 48 1 8.1268 -7.0407 4.9891 49 1 9.0726 -6.3198 3.6517 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001276701755.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:29 Heat of formation + Delta-G solvation = 15.091148 kcal Electronic energy + Delta-G solvation = -28907.964413 eV Core-core repulsion = 24837.083513 eV Total energy + Delta-G solvation = -4070.880900 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.02345 -39.76873 -38.91171 -38.18763 -35.09544 -33.58635 -33.38290 -32.48824 -31.42582 -30.75434 -28.73941 -27.42724 -26.79668 -24.75153 -24.16715 -22.98835 -22.36311 -21.20257 -20.76047 -19.85393 -19.40922 -18.54711 -17.50669 -17.37488 -16.81259 -16.42673 -16.30133 -16.02677 -15.54770 -14.82942 -14.43696 -14.37747 -14.23771 -13.94771 -13.80063 -13.61147 -13.41467 -13.28205 -13.18292 -12.95467 -12.83551 -12.61555 -12.33138 -12.16553 -11.98944 -11.75288 -11.63497 -10.96249 -10.93418 -10.72054 -10.57356 -10.49042 -10.15401 -10.08373 -10.03927 -9.79620 -9.64534 -9.55619 -9.19114 -9.01736 -8.70215 -8.50593 -7.02182 -6.16672 -3.22352 0.81647 1.03833 2.57113 2.78673 2.99389 3.47400 3.52293 3.54928 3.67490 3.77709 3.99666 4.35357 4.53543 4.66486 4.68443 4.77142 4.77663 4.79441 4.82387 4.92367 5.02576 5.04962 5.14331 5.16406 5.21765 5.34992 5.38465 5.42069 5.46508 5.58821 5.61959 5.63068 5.77621 5.78178 5.81183 5.86181 5.87156 5.96231 6.13956 6.29549 6.39718 6.54282 6.55924 6.74544 6.94917 6.97114 7.02698 7.41265 7.65607 7.72157 8.15591 8.41663 8.93947 9.74847 10.38134 11.19246 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.020814 B = 0.001723 C = 0.001630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1344.929986 B =16247.580230 C =17168.780675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.066 3.934 3 O -0.309 6.309 4 C 0.328 3.672 5 C -0.196 4.196 6 C -0.041 4.041 7 C -0.207 4.207 8 C 0.185 3.815 9 C -0.095 4.095 10 C 0.517 3.483 11 O -0.525 6.525 12 N -0.727 5.727 13 C 0.157 3.843 14 C -0.145 4.145 15 H 0.103 0.897 16 C -0.167 4.167 17 H 0.105 0.895 18 C 0.153 3.847 19 N -0.598 5.598 20 C -0.331 4.331 21 H 0.064 0.936 22 C -0.026 4.026 23 N -0.918 5.918 24 Si 1.071 2.929 25 H -0.293 1.293 26 H -0.292 1.292 27 H -0.285 1.285 28 C 0.164 3.836 29 C -0.160 4.160 30 H 0.107 0.893 31 N -0.512 5.512 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.079 0.921 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.140 0.860 38 H 0.142 0.858 39 H 0.137 0.863 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.401 0.599 43 H 0.067 0.933 44 H 0.070 0.930 45 H 0.023 0.977 46 H 0.052 0.948 47 H 0.268 0.732 48 H 0.067 0.933 49 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.164 24.223 -12.866 29.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 O -0.217 6.217 4 C 0.148 3.852 5 C -0.216 4.216 6 C -0.067 4.067 7 C -0.227 4.227 8 C 0.048 3.952 9 C -0.135 4.135 10 C 0.302 3.698 11 O -0.401 6.401 12 N -0.379 5.379 13 C 0.033 3.967 14 C -0.164 4.164 15 H 0.121 0.879 16 C -0.187 4.187 17 H 0.123 0.877 18 C 0.027 3.973 19 N -0.322 5.322 20 C -0.458 4.458 21 H 0.082 0.918 22 C -0.228 4.228 23 N -0.558 5.558 24 Si 0.900 3.100 25 H -0.221 1.221 26 H -0.218 1.218 27 H -0.211 1.211 28 C 0.038 3.962 29 C -0.180 4.180 30 H 0.125 0.875 31 N -0.235 5.235 32 H 0.083 0.917 33 H 0.082 0.918 34 H 0.098 0.902 35 H 0.082 0.918 36 H 0.089 0.911 37 H 0.157 0.843 38 H 0.159 0.841 39 H 0.155 0.845 40 H 0.131 0.869 41 H 0.132 0.868 42 H 0.236 0.764 43 H 0.085 0.915 44 H 0.088 0.912 45 H 0.041 0.959 46 H 0.070 0.930 47 H 0.079 0.921 48 H 0.085 0.915 49 H 0.043 0.957 Dipole moment (debyes) X Y Z Total from point charges -10.869 22.651 -11.020 27.434 hybrid contribution 0.163 1.406 -1.587 2.126 sum -10.706 24.057 -12.607 29.194 Atomic orbital electron populations 1.21819 0.93085 1.02970 1.03088 1.22613 0.94558 0.80804 1.02899 1.86205 1.16831 1.30986 1.87658 1.19737 0.84083 0.89703 0.91652 1.21062 0.95956 0.95762 1.08857 1.21339 0.92290 0.99321 0.93723 1.21751 1.01360 0.92487 1.07099 1.20149 0.88692 0.93421 0.92982 1.20657 0.99806 0.93550 0.99485 1.20187 0.82061 0.81435 0.86125 1.90742 1.30054 1.72587 1.46686 1.45995 1.39577 1.21117 1.31223 1.20824 0.98115 0.89020 0.88713 1.22529 0.99826 0.89735 1.04348 0.87855 1.24086 0.99123 0.94063 1.01447 0.87683 1.21225 0.94359 0.91755 0.89940 1.45309 1.76410 1.01494 1.09033 1.19748 1.22818 0.80884 1.22377 0.91790 1.25892 0.92432 1.05026 0.99446 1.70746 1.24688 1.16663 1.43748 0.83453 0.75228 0.74495 0.76787 1.22084 1.21843 1.21074 1.21130 0.92258 0.85971 0.96792 1.23952 1.03213 0.99489 0.91378 0.87537 1.67037 1.05785 1.33145 1.17576 0.91684 0.91818 0.90242 0.91785 0.91092 0.84261 0.84068 0.84479 0.86929 0.86817 0.76432 0.91455 0.91210 0.95920 0.92978 0.92089 0.91475 0.95658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 10.28 37.16 0.38 -0.77 16 2 C 0.07 0.69 6.03 37.16 0.22 0.91 16 3 O -0.31 -3.63 10.12 -18.73 -0.19 -3.82 16 4 C 0.33 3.91 7.49 -17.12 -0.13 3.78 16 5 C -0.20 -1.81 10.04 -39.28 -0.39 -2.20 16 6 C -0.04 -0.31 10.17 -39.31 -0.40 -0.71 16 7 C -0.21 -1.66 9.70 -39.43 -0.38 -2.05 16 8 C 0.19 1.92 5.76 -82.60 -0.48 1.44 16 9 C -0.09 -0.76 6.10 -29.03 -0.18 -0.94 16 10 C 0.52 6.13 7.76 -10.99 -0.09 6.04 16 11 O -0.53 -8.58 15.33 5.55 0.09 -8.50 16 12 N -0.73 -7.73 5.56 -60.29 -0.33 -8.07 16 13 C 0.16 2.03 5.95 -4.04 -0.02 2.01 16 14 C -0.15 -2.11 5.39 -90.62 -0.49 -2.60 16 15 H 0.10 1.46 8.04 -51.93 -0.42 1.04 16 16 C -0.17 -2.87 6.76 -89.01 -0.60 -3.47 16 17 H 0.11 1.69 8.12 -51.93 -0.42 1.27 16 18 C 0.15 3.17 7.06 -2.19 -0.02 3.16 16 19 N -0.60 -15.21 3.22 -168.61 -0.54 -15.76 16 20 C -0.33 -9.36 10.19 -15.06 -0.15 -9.51 16 21 H 0.06 1.80 7.94 -52.49 -0.42 1.38 16 22 C -0.03 -0.75 5.12 -17.43 -0.09 -0.84 16 23 N -0.92 -27.68 12.82 55.49 0.71 -26.97 16 24 Si 1.07 25.33 29.98 -169.99 -5.10 20.24 16 25 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 28 C 0.16 3.78 5.00 -2.41 -0.01 3.77 16 29 C -0.16 -2.90 6.85 -89.22 -0.61 -3.51 16 30 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 31 N -0.51 -6.48 8.08 -9.55 -0.08 -6.56 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 36 H 0.07 0.86 8.10 -51.93 -0.42 0.44 16 37 H 0.14 1.00 8.06 -52.49 -0.42 0.58 16 38 H 0.14 0.60 8.06 -52.48 -0.42 0.17 16 39 H 0.14 0.70 7.94 -52.49 -0.42 0.29 16 40 H 0.11 0.54 7.86 -51.93 -0.41 0.13 16 41 H 0.11 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.40 3.19 8.40 -40.82 -0.34 2.85 16 43 H 0.07 0.95 7.94 -51.93 -0.41 0.53 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 46 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 47 H 0.27 8.09 6.42 -40.82 -0.26 7.82 16 48 H 0.07 1.71 7.47 -51.93 -0.39 1.33 16 49 H 0.03 0.60 7.66 -51.93 -0.40 0.20 16 LS Contribution 407.33 15.07 6.14 6.14 Total: -1.00 -35.82 407.33 -10.49 -46.31 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -7.75 Total: 2.46 kcal Atomic # 6 Polarization: -2.04 SS G_CDS: -3.43 Total: -5.47 kcal Atomic # 7 Polarization: -57.11 SS G_CDS: -0.24 Total: -57.35 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: -0.10 Total: -12.32 kcal Atomic # 14 Polarization: 25.33 SS G_CDS: -5.10 Total: 20.24 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.82 -10.49 -46.31 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001276701755.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.402 kcal (2) G-P(sol) polarization free energy of solvation -35.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds