Wall clock time and date at job start Wed Apr 1 2020 04:13:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.32682 * 1 3 3 C 1.47662 * 120.00215 * 2 1 4 4 C 1.39715 * 119.99558 * 359.72625 * 3 2 1 5 5 C 1.37597 * 120.00480 * 179.76411 * 4 3 2 6 6 C 1.39753 * 119.99680 * 0.51371 * 5 4 3 7 7 C 1.47684 * 120.00637 * 179.71937 * 6 5 4 8 8 O 1.21569 * 119.99908 * 180.02562 * 7 6 5 9 9 N 1.34776 * 119.99663 * 0.02562 * 7 6 5 10 10 C 1.46502 * 119.99601 * 179.97438 * 9 7 6 11 11 C 1.52998 * 109.46985 * 179.97438 * 10 9 7 12 12 N 1.46900 * 109.47207 * 174.89035 * 11 10 9 13 13 C 1.46903 * 110.99856 * 199.54504 * 12 11 10 14 14 C 1.53001 * 109.46921 * 76.02745 * 13 12 11 15 15 C 1.46897 * 111.00194 * 75.58983 * 12 11 10 16 16 C 1.50706 * 109.47121 * 189.99995 * 15 12 11 17 17 O 1.21285 * 119.99805 * 0.02562 * 16 15 12 18 18 N 1.34774 * 119.99676 * 179.97438 * 16 15 12 19 19 C 1.37101 * 119.99863 * 180.02562 * 18 16 15 20 20 H 1.07997 * 119.99600 * 0.02562 * 19 18 16 21 21 C 1.38943 * 120.00093 * 180.02562 * 19 18 16 22 22 N 1.31415 * 119.99923 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00207 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47192 * 89.99822 * 23 21 19 25 25 H 1.48500 * 109.47229 * 210.00014 * 23 21 19 26 26 H 1.48498 * 109.46885 * 330.00278 * 23 21 19 27 27 C 1.39747 * 119.98959 * 359.73744 * 6 5 4 28 28 C 1.37601 * 119.99470 * 0.02562 * 27 6 5 29 29 H 1.07997 * 119.99984 * 359.97438 * 1 2 3 30 30 H 1.07999 * 119.99807 * 179.72534 * 1 2 3 31 31 H 1.08006 * 119.99720 * 179.97438 * 2 1 3 32 32 H 1.08005 * 119.99609 * 0.02562 * 4 3 2 33 33 H 1.07997 * 120.00792 * 180.25461 * 5 4 3 34 34 H 0.96995 * 120.00283 * 359.97438 * 9 7 6 35 35 H 1.08998 * 109.47290 * 299.99943 * 10 9 7 36 36 H 1.08998 * 109.47247 * 60.00157 * 10 9 7 37 37 H 1.09007 * 109.47187 * 294.88949 * 11 10 9 38 38 H 1.09004 * 109.47401 * 54.88622 * 11 10 9 39 39 H 1.09006 * 109.47062 * 196.02313 * 13 12 11 40 40 H 1.08996 * 109.47322 * 316.02042 * 13 12 11 41 41 H 1.08994 * 109.47521 * 54.86864 * 14 13 12 42 42 H 1.09002 * 109.47066 * 174.87101 * 14 13 12 43 43 H 1.08997 * 109.47011 * 294.86483 * 14 13 12 44 44 H 1.08998 * 109.47155 * 310.00396 * 15 12 11 45 45 H 1.09007 * 109.47190 * 70.00280 * 15 12 11 46 46 H 0.97001 * 120.00497 * 0.02562 * 18 16 15 47 47 H 0.97006 * 119.99898 * 179.97438 * 22 21 19 48 48 H 1.07997 * 120.00302 * 179.97438 * 27 6 5 49 49 H 1.08001 * 119.99695 * 179.97438 * 28 27 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3268 0.0000 0.0000 3 6 2.0652 1.2788 0.0000 4 6 1.3666 2.4887 -0.0058 5 6 2.0544 3.6804 -0.0009 6 6 3.4519 3.6805 -0.0010 7 6 4.1903 4.9595 -0.0020 8 8 5.4060 4.9595 -0.0025 9 7 3.5164 6.1267 -0.0023 10 6 4.2490 7.3954 -0.0027 11 6 3.2547 8.5583 -0.0036 12 7 3.9850 9.8270 0.1193 13 6 3.0975 10.9026 0.5813 14 6 2.8386 10.7415 2.0806 15 6 4.6323 10.1869 -1.1493 16 6 5.5646 11.3497 -0.9254 17 8 5.6789 11.8307 0.1821 18 7 6.2720 11.8542 -1.9557 19 6 7.1206 12.9116 -1.7519 20 1 7.2223 13.3399 -0.7658 21 6 7.8495 13.4321 -2.8141 22 7 8.6625 14.4459 -2.6189 23 14 7.6740 12.6906 -4.5197 24 1 6.5840 13.3847 -5.2514 25 1 8.9496 12.8512 -5.2629 26 1 7.3489 11.2466 -4.4006 27 6 4.1505 2.4702 -0.0005 28 6 3.4623 1.2787 -0.0005 29 1 -0.5400 0.9353 0.0004 30 1 -0.5400 -0.9353 -0.0045 31 1 1.8668 -0.9354 0.0004 32 1 0.2865 2.4886 -0.0098 33 1 1.5144 4.6157 -0.0012 34 1 2.5465 6.1267 -0.0022 35 1 4.8757 7.4534 0.8872 36 1 4.8755 7.4529 -0.8927 37 1 2.6902 8.5529 -0.9361 38 1 2.5690 8.4508 0.8369 39 1 3.5691 11.8677 0.3957 40 1 2.1520 10.8506 0.0415 41 1 3.7897 10.7022 2.6115 42 1 2.2556 11.5887 2.4417 43 1 2.2858 9.8187 2.2567 44 1 5.1985 9.3339 -1.5231 45 1 3.8719 10.4662 -1.8788 46 1 6.1809 11.4692 -2.8413 47 1 9.1717 14.8091 -3.3604 48 1 5.2305 2.4701 -0.0010 49 1 4.0022 0.3433 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317486567.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:13:07 Heat of formation + Delta-G solvation = -12.055863 kcal Electronic energy + Delta-G solvation = -28672.904376 eV Core-core repulsion = 24600.846293 eV Total energy + Delta-G solvation = -4072.058083 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.51623 -39.11930 -38.70486 -37.01971 -34.94237 -34.64908 -33.86213 -31.75698 -31.65686 -30.97379 -30.25114 -29.03196 -26.46345 -24.71911 -23.95999 -23.16398 -22.63398 -21.24991 -20.80914 -20.03436 -19.33949 -18.39008 -18.26900 -16.90298 -16.27912 -16.04616 -15.78412 -15.43973 -15.24340 -15.13433 -14.79479 -14.75523 -14.32938 -14.13176 -13.95169 -13.77251 -13.62576 -13.29847 -13.17905 -13.16003 -12.72013 -12.55111 -12.43625 -12.00186 -11.81152 -11.79642 -11.64492 -11.48941 -11.37447 -11.22842 -10.90418 -10.83959 -10.61300 -10.55539 -10.17210 -9.95605 -9.50910 -9.48433 -9.27356 -8.71926 -8.55049 -8.16272 -8.04335 -6.29133 -3.80372 0.10780 0.93255 1.77405 2.76044 2.82605 3.05044 3.08144 3.16861 3.55358 3.75162 3.95505 4.12251 4.16233 4.21122 4.39470 4.50827 4.64998 4.70429 4.84062 4.85517 4.93142 5.00251 5.19672 5.21748 5.28578 5.32625 5.34039 5.46931 5.52755 5.69152 5.70615 5.72841 5.76707 5.78837 5.81397 5.87895 5.91250 5.98554 6.02708 6.06604 6.20156 6.22229 6.38664 6.41600 6.52704 7.14344 7.20390 7.29136 7.60257 7.98773 8.16443 8.62123 8.97268 9.44566 9.85208 10.83970 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.015321 B = 0.001849 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.177730 B =15140.273586 C =16238.072655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.124 4.124 3 C -0.037 4.037 4 C -0.124 4.124 5 C -0.084 4.084 6 C -0.132 4.132 7 C 0.555 3.445 8 O -0.531 6.531 9 N -0.724 5.724 10 C 0.120 3.880 11 C 0.044 3.956 12 N -0.511 5.511 13 C 0.052 3.948 14 C -0.139 4.139 15 C 0.039 3.961 16 C 0.453 3.547 17 O -0.557 6.557 18 N -0.591 5.591 19 C -0.304 4.304 20 H 0.120 0.880 21 C 0.042 3.958 22 N -0.882 5.882 23 Si 0.878 3.122 24 H -0.272 1.272 25 H -0.276 1.276 26 H -0.269 1.269 27 C -0.057 4.057 28 C -0.117 4.117 29 H 0.103 0.897 30 H 0.107 0.893 31 H 0.121 0.879 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.397 0.603 35 H 0.083 0.917 36 H 0.071 0.929 37 H 0.039 0.961 38 H 0.081 0.919 39 H 0.098 0.902 40 H 0.024 0.976 41 H 0.068 0.932 42 H 0.054 0.946 43 H 0.042 0.958 44 H 0.090 0.910 45 H 0.050 0.950 46 H 0.370 0.630 47 H 0.273 0.727 48 H 0.139 0.861 49 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.289 -27.360 2.664 34.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.142 4.142 3 C -0.037 4.037 4 C -0.142 4.142 5 C -0.102 4.102 6 C -0.135 4.135 7 C 0.342 3.658 8 O -0.408 6.408 9 N -0.377 5.377 10 C -0.003 4.003 11 C -0.085 4.085 12 N -0.236 5.236 13 C -0.075 4.075 14 C -0.197 4.197 15 C -0.092 4.092 16 C 0.238 3.762 17 O -0.438 6.438 18 N -0.231 5.231 19 C -0.432 4.432 20 H 0.138 0.862 21 C -0.161 4.161 22 N -0.522 5.522 23 Si 0.705 3.295 24 H -0.197 1.197 25 H -0.202 1.202 26 H -0.195 1.195 27 C -0.076 4.076 28 C -0.135 4.135 29 H 0.121 0.879 30 H 0.125 0.875 31 H 0.139 0.861 32 H 0.149 0.851 33 H 0.145 0.855 34 H 0.232 0.768 35 H 0.101 0.899 36 H 0.089 0.911 37 H 0.057 0.943 38 H 0.099 0.901 39 H 0.116 0.884 40 H 0.042 0.958 41 H 0.087 0.913 42 H 0.073 0.927 43 H 0.061 0.939 44 H 0.109 0.891 45 H 0.067 0.933 46 H 0.202 0.798 47 H 0.084 0.916 48 H 0.157 0.843 49 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -18.788 -26.873 3.689 32.996 hybrid contribution -1.104 -0.392 -2.153 2.451 sum -19.891 -27.264 1.537 33.784 Atomic orbital electron populations 1.24481 0.95670 1.02535 0.98061 1.21851 0.95300 0.95777 1.01288 1.19336 0.93442 0.93297 0.97639 1.21217 1.00151 0.91476 1.01324 1.21216 0.92949 0.98448 0.97627 1.20050 0.93646 0.93746 1.06098 1.18212 0.87290 0.83608 0.76656 1.90821 1.13341 1.87491 1.49138 1.45843 1.10280 1.05956 1.75601 1.21396 0.94621 0.80502 1.03803 1.22261 0.95252 0.89980 1.00987 1.61433 1.31595 1.01994 1.28597 1.22187 0.93375 0.96241 0.95709 1.21693 1.02006 1.00086 0.95892 1.21989 0.97542 0.98994 0.90722 1.19595 0.84779 0.86243 0.85581 1.90550 1.67655 1.62188 1.23437 1.42219 1.40223 1.31667 1.08984 1.19424 1.17758 1.06878 0.99180 0.86242 1.25026 0.96443 0.96405 0.98237 1.69624 1.26413 1.23723 1.32400 0.86690 0.78790 0.79340 0.84698 1.19707 1.20166 1.19452 1.21254 1.01055 0.90687 0.94615 1.21268 0.93162 0.98293 1.00779 0.87878 0.87511 0.86090 0.85119 0.85462 0.76798 0.89857 0.91119 0.94273 0.90063 0.88393 0.95823 0.91285 0.92730 0.93903 0.89148 0.93250 0.79762 0.91645 0.84307 0.85035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 14.15 28.84 0.41 -0.28 16 2 C -0.12 -0.64 9.90 -37.63 -0.37 -1.02 16 3 C -0.04 -0.25 5.87 -104.95 -0.62 -0.87 16 4 C -0.12 -0.79 9.38 -39.26 -0.37 -1.16 16 5 C -0.08 -0.59 9.52 -39.25 -0.37 -0.96 16 6 C -0.13 -1.27 5.88 -104.91 -0.62 -1.89 16 7 C 0.56 6.74 7.77 -12.40 -0.10 6.65 16 8 O -0.53 -8.68 16.33 5.30 0.09 -8.59 16 9 N -0.72 -7.13 5.51 -61.30 -0.34 -7.46 16 10 C 0.12 1.45 5.71 -4.04 -0.02 1.42 16 11 C 0.04 0.49 4.92 -3.82 -0.02 0.47 16 12 N -0.51 -7.79 4.10 -236.06 -0.97 -8.76 16 13 C 0.05 0.78 5.18 -3.82 -0.02 0.76 16 14 C -0.14 -1.83 9.96 37.16 0.37 -1.46 16 15 C 0.04 0.65 5.28 -4.97 -0.03 0.62 16 16 C 0.45 10.20 7.29 -10.98 -0.08 10.12 16 17 O -0.56 -14.64 14.12 5.55 0.08 -14.56 16 18 N -0.59 -14.12 5.09 -10.96 -0.06 -14.18 16 19 C -0.30 -8.61 10.16 -14.93 -0.15 -8.76 16 20 H 0.12 3.86 7.39 -52.49 -0.39 3.48 16 21 C 0.04 1.15 5.50 -17.47 -0.10 1.06 16 22 N -0.88 -25.91 13.96 55.50 0.77 -25.13 16 23 Si 0.88 19.57 27.74 -169.99 -4.71 14.86 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 25 H -0.28 -6.20 7.11 56.52 0.40 -5.79 16 26 H -0.27 -5.51 6.52 56.52 0.37 -5.14 16 27 C -0.06 -0.53 9.58 -39.25 -0.38 -0.91 16 28 C -0.12 -0.86 9.76 -39.26 -0.38 -1.24 16 29 H 0.10 0.35 6.02 -52.49 -0.32 0.03 16 30 H 0.11 0.28 8.06 -52.49 -0.42 -0.14 16 31 H 0.12 0.46 8.06 -52.48 -0.42 0.04 16 32 H 0.13 0.55 6.15 -52.48 -0.32 0.22 16 33 H 0.13 0.56 6.38 -52.49 -0.34 0.23 16 34 H 0.40 2.59 6.49 -40.82 -0.26 2.33 16 35 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 36 H 0.07 0.95 6.95 -51.93 -0.36 0.58 16 37 H 0.04 0.38 8.00 -51.93 -0.42 -0.04 16 38 H 0.08 0.77 6.58 -51.93 -0.34 0.43 16 39 H 0.10 1.82 5.86 -51.93 -0.30 1.52 16 40 H 0.02 0.30 7.99 -51.93 -0.42 -0.11 16 41 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 42 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 43 H 0.04 0.47 6.91 -51.93 -0.36 0.11 16 44 H 0.09 1.37 6.71 -51.93 -0.35 1.02 16 45 H 0.05 0.71 8.12 -51.93 -0.42 0.29 16 46 H 0.37 7.80 5.76 -40.82 -0.24 7.57 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 48 H 0.14 1.33 7.64 -52.49 -0.40 0.93 16 49 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 LS Contribution 403.23 15.07 6.08 6.08 Total: -1.00 -35.37 403.23 -8.83 -44.20 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -6.93 Total: 11.01 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -2.84 Total: 2.55 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: -0.59 Total: -55.54 kcal Atomic # 8 Polarization: -23.32 SS G_CDS: 0.17 Total: -23.15 kcal Atomic # 14 Polarization: 19.57 SS G_CDS: -4.71 Total: 14.86 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.37 -8.83 -44.20 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317486567.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.144 kcal (2) G-P(sol) polarization free energy of solvation -35.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds