Wall clock time and date at job start Wed Apr 1 2020 05:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 O 1.21282 * 120.00102 * 2 1 4 4 N 1.34773 * 119.99925 * 179.97438 * 2 1 3 5 5 C 1.47427 * 125.65121 * 359.95412 * 4 2 1 6 6 C 1.54908 * 104.83334 * 155.91399 * 5 4 2 7 7 C 1.55155 * 101.58297 * 37.00809 * 6 5 4 8 8 C 1.47028 * 125.64915 * 180.02562 * 4 2 1 9 9 H 1.09000 * 110.00738 * 300.50788 * 8 4 2 10 10 C 1.50700 * 109.88093 * 61.59890 * 8 4 2 11 11 O 1.21283 * 119.99803 * 17.80875 * 10 8 4 12 12 N 1.34777 * 119.99675 * 198.08751 * 10 8 4 13 13 C 1.46497 * 119.99525 * 179.72583 * 12 10 8 14 14 C 1.50706 * 109.47174 * 179.97438 * 13 12 10 15 15 C 1.38232 * 120.00223 * 269.73231 * 14 13 12 16 16 C 1.38229 * 120.00088 * 179.80810 * 15 14 13 17 17 C 1.38239 * 120.00001 * 0.39037 * 16 15 14 18 18 C 1.50701 * 120.00336 * 179.83282 * 17 16 15 19 19 N 1.46497 * 109.47291 * 270.02485 * 18 17 16 20 20 C 1.36942 * 120.00182 * 179.97438 * 19 18 17 21 21 H 1.08001 * 119.99458 * 0.02562 * 20 19 18 22 22 C 1.38807 * 120.00050 * 180.02562 * 20 19 18 23 23 N 1.31614 * 120.00511 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99545 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47569 * 0.02562 * 24 22 20 26 26 H 1.48505 * 109.46896 * 119.99784 * 24 22 20 27 27 H 1.48504 * 109.46879 * 239.99484 * 24 22 20 28 28 C 1.38239 * 119.99961 * 359.86457 * 17 16 15 29 29 C 1.38234 * 119.99642 * 89.99574 * 14 13 12 30 30 H 1.09002 * 109.47088 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46812 * 300.00610 * 1 2 3 32 32 H 1.08997 * 109.46734 * 60.00351 * 1 2 3 33 33 H 1.08999 * 110.36712 * 37.07298 * 5 4 2 34 34 H 1.09005 * 110.45880 * 274.80168 * 5 4 2 35 35 H 1.09002 * 111.00225 * 278.93159 * 6 5 4 36 36 H 1.09001 * 111.03499 * 155.09848 * 6 5 4 37 37 H 1.09001 * 110.71515 * 206.13699 * 7 6 5 38 38 H 1.09004 * 110.71860 * 82.86199 * 7 6 5 39 39 H 0.97000 * 119.99894 * 359.71837 * 12 10 8 40 40 H 1.08995 * 109.47421 * 299.99467 * 13 12 10 41 41 H 1.09001 * 109.47621 * 60.00103 * 13 12 10 42 42 H 1.08000 * 119.99855 * 359.97438 * 15 14 13 43 43 H 1.08000 * 120.00444 * 180.22745 * 16 15 14 44 44 H 1.08997 * 109.46687 * 30.02626 * 18 17 16 45 45 H 1.09002 * 109.46998 * 150.02256 * 18 17 16 46 46 H 0.97000 * 120.00086 * 0.02562 * 19 18 17 47 47 H 0.96997 * 120.00711 * 180.02562 * 23 22 20 48 48 H 1.07998 * 119.99993 * 179.97438 * 28 17 16 49 49 H 1.08006 * 120.00285 * 359.97438 * 29 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5731 -2.5103 0.0021 6 6 2.6546 -3.4358 -0.6090 7 6 3.9550 -2.8233 -0.0249 8 6 3.6440 -1.3119 0.0011 9 1 4.0667 -0.8314 -0.8812 10 6 4.2199 -0.6913 1.2478 11 8 3.5037 -0.4691 2.2010 12 7 5.5297 -0.3780 1.3014 13 6 6.0882 0.2308 2.5111 14 6 7.5615 0.4795 2.3141 15 6 8.4795 -0.4926 2.6649 16 6 9.8306 -0.2660 2.4804 17 6 10.2642 0.9359 1.9527 18 6 11.7374 1.1844 1.7552 19 7 12.2963 1.7940 2.9644 20 6 13.6273 2.1114 3.0187 21 1 14.2648 1.9127 2.1699 22 6 14.1569 2.6885 4.1647 23 7 13.3799 2.9312 5.1988 24 14 15.9724 3.1222 4.2384 25 1 16.6221 2.7532 2.9551 26 1 16.1238 4.5816 4.4675 27 1 16.6144 2.3771 5.3511 28 6 9.3464 1.9101 1.6068 29 6 7.9951 1.6819 1.7876 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.6734 -2.5203 -0.6133 34 1 1.3388 -2.8213 1.0202 35 1 2.6495 -3.3769 -1.6974 36 1 2.5231 -4.4650 -0.2749 37 1 4.8049 -3.0312 -0.6749 38 1 4.1382 -3.1964 0.9828 39 1 6.1024 -0.5558 0.5390 40 1 5.5831 1.1763 2.7085 41 1 5.9436 -0.4419 3.3565 42 1 8.1410 -1.4302 3.0805 43 1 10.5477 -1.0269 2.7511 44 1 12.2421 0.2386 1.5584 45 1 11.8822 1.8564 0.9092 46 1 11.7237 1.9721 3.7268 47 1 13.7499 3.3348 5.9995 48 1 9.6852 2.8492 1.1950 49 1 7.2780 2.4429 1.5171 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319009393.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:46:05 Heat of formation + Delta-G solvation = -31.718927 kcal Electronic energy + Delta-G solvation = -29020.272472 eV Core-core repulsion = 24947.361735 eV Total energy + Delta-G solvation = -4072.910737 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.02270 -39.52603 -38.79721 -37.51532 -35.48836 -34.31840 -32.61807 -32.05789 -30.79374 -30.70398 -30.05033 -29.12875 -26.95060 -24.75634 -23.95203 -22.47432 -22.45704 -22.06801 -21.11420 -20.47788 -19.51607 -17.92877 -17.56881 -17.28423 -16.53756 -15.96463 -15.68325 -15.61715 -15.21870 -14.94977 -14.74521 -14.62160 -14.52744 -13.91963 -13.83157 -13.51205 -13.38160 -13.20285 -13.16570 -13.09051 -12.86938 -12.80377 -12.43020 -12.31363 -12.15494 -11.95947 -11.82389 -11.77396 -11.48599 -11.08068 -10.87238 -10.72853 -10.58231 -10.22137 -10.17773 -10.03745 -9.78749 -9.22704 -9.07802 -8.91705 -8.67578 -8.41224 -6.95106 -5.77344 -3.07411 1.40461 1.65486 2.22185 2.41903 2.57268 3.15476 3.42840 3.48120 3.50728 3.85483 3.94231 4.02256 4.29352 4.42723 4.54395 4.60900 4.62055 4.72813 4.80218 4.86231 4.98236 5.00751 5.03778 5.17757 5.21183 5.25246 5.27548 5.35811 5.38708 5.42424 5.54288 5.56410 5.63318 5.74390 5.77205 5.87248 6.15060 6.18251 6.20297 6.24177 6.49066 6.57956 6.64417 6.72021 7.06785 7.10648 7.23005 7.32513 7.68466 7.83158 8.04931 8.40248 9.51888 10.07989 10.43648 11.45152 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.028324 B = 0.001666 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.338589 B =16798.687297 C =17207.051385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.532 3.468 3 O -0.536 6.536 4 N -0.604 5.604 5 C 0.098 3.902 6 C -0.131 4.131 7 C -0.122 4.122 8 C 0.118 3.882 9 H 0.098 0.902 10 C 0.509 3.491 11 O -0.530 6.530 12 N -0.721 5.721 13 C 0.168 3.832 14 C -0.124 4.124 15 C -0.104 4.104 16 C -0.107 4.107 17 C -0.064 4.064 18 C 0.184 3.816 19 N -0.727 5.727 20 C -0.243 4.243 21 H 0.072 0.928 22 C -0.013 4.013 23 N -0.931 5.931 24 Si 0.909 3.091 25 H -0.280 1.280 26 H -0.291 1.291 27 H -0.291 1.291 28 C -0.106 4.106 29 C -0.103 4.103 30 H 0.076 0.924 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.401 0.599 40 H 0.074 0.926 41 H 0.073 0.927 42 H 0.118 0.882 43 H 0.124 0.876 44 H 0.028 0.972 45 H 0.028 0.972 46 H 0.386 0.614 47 H 0.255 0.745 48 H 0.124 0.876 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.410 -15.900 -14.721 34.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.321 3.679 3 O -0.412 6.412 4 N -0.339 5.339 5 C -0.024 4.024 6 C -0.169 4.169 7 C -0.160 4.160 8 C 0.010 3.990 9 H 0.116 0.884 10 C 0.293 3.707 11 O -0.405 6.405 12 N -0.373 5.373 13 C 0.045 3.955 14 C -0.124 4.124 15 C -0.122 4.122 16 C -0.125 4.125 17 C -0.065 4.065 18 C 0.057 3.943 19 N -0.371 5.371 20 C -0.374 4.374 21 H 0.090 0.910 22 C -0.209 4.209 23 N -0.579 5.579 24 Si 0.740 3.260 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.218 1.218 28 C -0.124 4.124 29 C -0.121 4.121 30 H 0.095 0.905 31 H 0.115 0.885 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.100 0.900 36 H 0.109 0.891 37 H 0.112 0.888 38 H 0.102 0.898 39 H 0.235 0.765 40 H 0.092 0.908 41 H 0.092 0.908 42 H 0.136 0.864 43 H 0.142 0.858 44 H 0.046 0.954 45 H 0.046 0.954 46 H 0.220 0.780 47 H 0.065 0.935 48 H 0.142 0.858 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -27.502 -15.041 -14.058 34.354 hybrid contribution 1.188 0.316 0.184 1.243 sum -26.313 -14.725 -13.873 33.192 Atomic orbital electron populations 1.21868 0.91049 1.04328 1.05392 1.20516 0.90414 0.81890 0.75040 1.90754 1.70523 1.30608 1.49279 1.48321 1.05054 1.06417 1.74139 1.22411 0.96955 0.81512 1.01553 1.22795 0.93560 0.99360 1.01181 1.22632 0.99216 0.90904 1.03234 1.21494 0.82924 0.97667 0.96881 0.88407 1.20763 0.82091 0.78370 0.89457 1.90696 1.59078 1.52957 1.37792 1.46068 1.09246 1.63459 1.18513 1.20142 0.89555 0.98756 0.87058 1.19673 0.93949 0.95505 1.03311 1.20968 0.92975 0.98486 0.99796 1.21111 0.95241 0.97495 0.98676 1.20392 0.96944 0.93316 0.95845 1.19705 0.86510 0.96542 0.91504 1.42349 1.07832 1.73687 1.13256 1.19289 0.85304 1.33548 0.99213 0.90991 1.24768 0.98052 1.01759 0.96327 1.69681 1.34338 1.49053 1.04833 0.86097 0.84856 0.77775 0.77318 1.20508 1.21828 1.21828 1.21128 0.92414 0.99017 0.99875 1.21018 0.95831 0.96387 0.98896 0.90458 0.88495 0.88703 0.89857 0.90828 0.89999 0.89118 0.88753 0.89803 0.76451 0.90793 0.90845 0.86370 0.85820 0.95398 0.95391 0.78046 0.93491 0.85802 0.86300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.04 10.19 36.01 0.37 -0.67 16 2 C 0.53 5.82 7.34 -10.98 -0.08 5.74 16 3 O -0.54 -8.45 16.89 5.56 0.09 -8.36 16 4 N -0.60 -5.26 2.76 -164.32 -0.45 -5.71 16 5 C 0.10 0.45 6.39 -2.53 -0.02 0.44 16 6 C -0.13 -0.39 7.09 -24.58 -0.17 -0.57 16 7 C -0.12 -0.58 6.47 -24.90 -0.16 -0.74 16 8 C 0.12 1.00 3.26 -68.10 -0.22 0.77 16 9 H 0.10 0.77 8.14 -51.93 -0.42 0.34 16 10 C 0.51 6.09 6.28 -10.98 -0.07 6.02 16 11 O -0.53 -8.52 16.09 5.55 0.09 -8.43 16 12 N -0.72 -7.58 5.55 -61.47 -0.34 -7.92 16 13 C 0.17 2.03 5.80 -5.19 -0.03 2.00 16 14 C -0.12 -1.60 5.25 -104.62 -0.55 -2.15 16 15 C -0.10 -1.37 9.70 -39.59 -0.38 -1.75 16 16 C -0.11 -1.65 9.70 -39.58 -0.38 -2.03 16 17 C -0.06 -1.11 5.25 -104.62 -0.55 -1.66 16 18 C 0.18 3.76 6.38 -5.20 -0.03 3.73 16 19 N -0.73 -18.73 5.59 -61.09 -0.34 -19.07 16 20 C -0.24 -6.85 9.99 -15.06 -0.15 -7.00 16 21 H 0.07 1.96 7.83 -52.49 -0.41 1.54 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.56 13.06 55.49 0.72 -27.84 16 24 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 25 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 C -0.11 -1.68 9.70 -39.58 -0.38 -2.06 16 29 C -0.10 -1.43 9.70 -39.58 -0.38 -1.81 16 30 H 0.08 0.27 6.09 -51.93 -0.32 -0.04 16 31 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.08 0.20 6.94 -51.93 -0.36 -0.16 16 34 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 35 H 0.08 0.19 8.14 -51.93 -0.42 -0.24 16 36 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 37 H 0.09 0.28 8.14 -51.93 -0.42 -0.15 16 38 H 0.08 0.47 7.84 -51.93 -0.41 0.06 16 39 H 0.40 3.33 8.46 -40.82 -0.35 2.98 16 40 H 0.07 1.00 8.09 -51.93 -0.42 0.58 16 41 H 0.07 0.90 8.08 -51.93 -0.42 0.48 16 42 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 43 H 0.12 1.85 8.06 -52.49 -0.42 1.43 16 44 H 0.03 0.56 8.09 -51.93 -0.42 0.14 16 45 H 0.03 0.57 8.09 -51.93 -0.42 0.15 16 46 H 0.39 10.64 7.66 -40.82 -0.31 10.33 16 47 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 48 H 0.12 1.93 8.06 -52.49 -0.42 1.50 16 49 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 409.49 15.07 6.17 6.17 Total: -1.00 -37.87 409.49 -10.00 -47.87 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -7.62 Total: 8.04 kcal Atomic # 6 Polarization: 1.08 SS G_CDS: -3.30 Total: -2.22 kcal Atomic # 7 Polarization: -60.14 SS G_CDS: -0.41 Total: -60.55 kcal Atomic # 8 Polarization: -16.97 SS G_CDS: 0.18 Total: -16.79 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -37.87 -10.00 -47.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319009393.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.147 kcal (2) G-P(sol) polarization free energy of solvation -37.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds