Wall clock time and date at job start Wed Apr 1 2020 05:44:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 119.99954 * 2 1 4 4 N 1.34777 * 120.00109 * 179.97438 * 2 1 3 5 5 C 1.46626 * 126.55395 * 0.03957 * 4 2 1 6 6 C 1.50810 * 107.71016 * 179.97438 * 5 4 2 7 7 C 1.38509 * 131.11162 * 179.97438 * 6 5 4 8 8 C 1.38018 * 120.19378 * 179.74318 * 7 6 5 9 9 C 1.38895 * 119.88866 * 0.50709 * 8 7 6 10 10 N 1.39923 * 120.09398 * 179.77083 * 9 8 7 11 11 C 1.34776 * 120.00196 * 326.57431 * 10 9 8 12 12 O 1.21290 * 119.99586 * 354.72224 * 11 10 9 13 13 C 1.50692 * 120.00382 * 174.72853 * 11 10 9 14 14 H 1.09004 * 109.47479 * 39.99656 * 13 11 10 15 15 N 1.46904 * 109.47475 * 159.99731 * 13 11 10 16 16 C 1.53006 * 109.47247 * 279.99573 * 13 11 10 17 17 C 1.52997 * 109.47042 * 174.99446 * 16 13 11 18 18 C 1.52998 * 109.46819 * 179.97438 * 17 16 13 19 19 C 1.50699 * 109.47169 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00291 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00189 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99917 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99950 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47423 * 60.00523 * 23 21 19 25 25 H 1.48508 * 109.47053 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47031 * 299.99950 * 23 21 19 27 27 C 1.38772 * 119.81180 * 359.49356 * 9 8 7 28 28 C 1.38128 * 108.83767 * 359.97438 * 6 5 4 29 29 C 1.46630 * 126.55712 * 179.97438 * 4 2 1 30 30 H 1.09002 * 109.47645 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47515 * 300.00183 * 1 2 3 32 32 H 1.09002 * 109.46881 * 60.00054 * 1 2 3 33 33 H 1.08998 * 109.80693 * 299.51937 * 5 4 2 34 34 H 1.08997 * 109.81791 * 60.35080 * 5 4 2 35 35 H 1.08000 * 119.91066 * 359.97438 * 7 6 5 36 36 H 1.07998 * 120.05652 * 180.25316 * 8 7 6 37 37 H 0.97001 * 120.00432 * 146.56856 * 10 9 8 38 38 H 1.00896 * 110.99955 * 59.99724 * 15 13 11 39 39 H 1.00903 * 111.00283 * 183.95300 * 15 13 11 40 40 H 1.08996 * 109.46947 * 295.00374 * 16 13 11 41 41 H 1.09004 * 109.46555 * 54.99711 * 16 13 11 42 42 H 1.08995 * 109.47553 * 300.00559 * 17 16 13 43 43 H 1.09004 * 109.47229 * 60.00677 * 17 16 13 44 44 H 1.08995 * 109.47528 * 300.00591 * 18 17 16 45 45 H 1.09005 * 109.47097 * 60.00639 * 18 17 16 46 46 H 0.96996 * 120.00211 * 179.97438 * 22 21 19 47 47 H 1.07994 * 119.97847 * 180.23416 * 27 9 8 48 48 H 1.09004 * 109.80624 * 60.48358 * 29 4 2 49 49 H 1.08993 * 109.86771 * 299.60972 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5975 -2.5124 0.0003 6 6 2.7330 -3.5049 0.0004 7 6 2.7319 -4.8900 0.0008 8 6 3.9243 -5.5850 -0.0045 9 6 5.1287 -4.8932 0.0005 10 7 6.3401 -5.5935 0.0000 11 6 6.4348 -6.7767 0.6385 12 8 5.5006 -7.1889 1.2931 13 6 7.7012 -7.5873 0.5391 14 1 8.5633 -6.9221 0.5884 15 7 7.7579 -8.5455 1.6513 16 6 7.7180 -8.3464 -0.7893 17 6 9.0569 -9.0699 -0.9463 18 6 9.0734 -9.8295 -2.2743 19 6 10.3920 -10.5427 -2.4287 20 1 11.1429 -10.4627 -1.6567 21 6 10.6393 -11.2983 -3.5552 22 7 9.7247 -11.3963 -4.4952 23 14 12.2734 -12.1830 -3.7462 24 1 12.4517 -13.1408 -2.6255 25 1 12.2895 -12.9201 -5.0353 26 1 13.3782 -11.1908 -3.7301 27 6 5.1273 -3.5055 0.0001 28 6 3.9291 -2.8141 0.0001 29 6 3.6376 -1.3346 0.0001 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.9864 -2.6501 0.8923 34 1 0.9856 -2.6497 -0.8912 35 1 1.7954 -5.4278 0.0015 36 1 3.9209 -6.6650 -0.0083 37 1 7.1117 -5.2276 -0.4600 38 1 6.9688 -9.1738 1.6277 39 1 8.6277 -9.0568 1.6441 40 1 6.9075 -9.0750 -0.8016 41 1 7.5866 -7.6428 -1.6114 42 1 9.8674 -8.3413 -0.9338 43 1 9.1883 -9.7736 -0.1241 44 1 8.2630 -10.5582 -2.2863 45 1 8.9419 -9.1262 -3.0967 46 1 9.8987 -11.9275 -5.2878 47 1 6.0621 -2.9649 0.0001 48 1 4.0625 -0.8742 0.8920 49 1 4.0630 -0.8743 -0.8916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327680601.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:46 Heat of formation + Delta-G solvation = -48.116654 kcal Electronic energy + Delta-G solvation = -28640.699320 eV Core-core repulsion = 24567.077524 eV Total energy + Delta-G solvation = -4073.621796 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.30449 -40.40118 -39.07751 -36.96171 -36.00850 -34.58368 -33.43878 -32.23014 -31.33543 -31.02553 -29.88401 -28.28555 -27.59937 -25.88243 -24.90874 -22.98941 -22.30856 -21.56958 -20.30768 -20.15204 -19.97356 -17.81811 -17.57442 -17.30466 -16.71641 -16.50958 -16.36673 -15.50791 -15.25556 -15.06016 -14.90075 -14.68278 -14.61039 -14.47810 -14.11253 -13.84045 -13.53688 -13.46356 -13.38720 -13.11925 -12.93289 -12.86169 -12.57731 -12.42834 -12.20967 -12.03788 -11.91711 -11.37916 -11.30673 -10.86956 -10.82460 -10.64170 -10.56733 -10.43742 -9.99027 -9.85842 -9.48352 -9.37814 -9.22075 -9.02217 -8.61990 -8.42759 -8.25553 -6.07890 -4.11261 0.85538 1.00330 2.13494 2.37114 2.44843 2.75706 3.27699 3.32768 3.34632 3.38768 3.81669 3.98881 4.30200 4.37926 4.45704 4.61045 4.69786 4.70427 4.85366 4.89075 4.95791 5.02010 5.06424 5.10923 5.13804 5.16661 5.20011 5.27970 5.31358 5.34235 5.56070 5.60449 5.63670 5.82953 5.86147 6.00600 6.13921 6.17291 6.17817 6.46915 6.63291 6.67309 6.93346 6.97509 6.99376 7.21817 7.47742 7.55906 7.63525 7.68083 7.90407 7.95961 8.32028 8.95521 9.53546 11.03175 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.001599 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.015813 B =17501.913658 C =17967.019603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.535 3.465 3 O -0.543 6.543 4 N -0.617 5.617 5 C 0.150 3.850 6 C -0.133 4.133 7 C -0.070 4.070 8 C -0.115 4.115 9 C 0.167 3.833 10 N -0.676 5.676 11 C 0.526 3.474 12 O -0.511 6.511 13 C 0.078 3.922 14 H 0.103 0.897 15 N -0.830 5.830 16 C -0.148 4.148 17 C -0.109 4.109 18 C 0.022 3.978 19 C -0.525 4.525 20 H 0.055 0.945 21 C 0.057 3.943 22 N -0.895 5.895 23 Si 0.893 3.107 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.277 1.277 27 C -0.124 4.124 28 C -0.086 4.086 29 C 0.152 3.848 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.130 0.870 36 H 0.142 0.858 37 H 0.414 0.586 38 H 0.350 0.650 39 H 0.354 0.646 40 H 0.065 0.935 41 H 0.067 0.933 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.015 0.985 45 H 0.016 0.984 46 H 0.262 0.738 47 H 0.130 0.870 48 H 0.083 0.917 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.666 18.990 9.512 27.626 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.325 3.675 3 O -0.419 6.419 4 N -0.352 5.352 5 C 0.027 3.973 6 C -0.134 4.134 7 C -0.089 4.089 8 C -0.135 4.135 9 C 0.072 3.928 10 N -0.322 5.322 11 C 0.314 3.686 12 O -0.384 6.384 13 C -0.038 4.038 14 H 0.121 0.879 15 N -0.363 5.363 16 C -0.187 4.187 17 C -0.146 4.146 18 C -0.015 4.015 19 C -0.563 4.563 20 H 0.073 0.927 21 C -0.144 4.144 22 N -0.534 5.534 23 Si 0.720 3.280 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 C -0.145 4.145 28 C -0.087 4.087 29 C 0.029 3.971 30 H 0.097 0.903 31 H 0.116 0.884 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.148 0.852 36 H 0.160 0.840 37 H 0.251 0.749 38 H 0.164 0.836 39 H 0.170 0.830 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.034 0.966 46 H 0.071 0.929 47 H 0.148 0.852 48 H 0.101 0.899 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.109 19.841 10.305 28.772 hybrid contribution 1.432 -1.226 -1.268 2.272 sum -16.677 18.615 9.037 26.576 Atomic orbital electron populations 1.21879 0.90656 1.04654 1.05596 1.20451 0.90397 0.81239 0.75434 1.90755 1.70701 1.30318 1.50158 1.48052 1.07214 1.05977 1.73996 1.20272 0.94451 0.79948 1.02632 1.20127 0.94566 0.93898 1.04822 1.20313 0.98312 0.91498 0.98817 1.21129 0.90415 1.01262 1.00702 1.17557 0.86185 0.90352 0.98702 1.43621 1.12316 1.21750 1.54474 1.20994 0.90260 0.80244 0.77127 1.90681 1.39954 1.69265 1.38519 1.21434 0.94743 0.95345 0.92253 0.87933 1.58687 1.09028 1.24074 1.44468 1.22434 1.01211 0.99900 0.95180 1.21657 0.93258 0.98450 1.01279 1.19076 0.97113 0.94774 0.90533 1.21197 1.00957 1.29855 1.04285 0.92713 1.25030 0.96856 0.96588 0.95927 1.69948 1.33890 1.40621 1.08905 0.86650 0.84106 0.79847 0.77354 1.20202 1.21258 1.20218 1.20083 0.97506 0.91843 1.05098 1.19909 0.93424 0.94595 1.00768 1.20139 0.81529 0.92242 1.03156 0.90278 0.88388 0.88373 0.89868 0.89816 0.85218 0.84033 0.74949 0.83627 0.83010 0.91586 0.91435 0.92937 0.93241 0.96684 0.96606 0.92879 0.85189 0.89891 0.89825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.73 10.23 36.00 0.37 -0.36 16 2 C 0.53 4.72 7.98 -10.99 -0.09 4.64 16 3 O -0.54 -7.12 17.47 5.56 0.10 -7.02 16 4 N -0.62 -5.01 3.34 -176.11 -0.59 -5.60 16 5 C 0.15 0.91 5.85 -5.07 -0.03 0.88 16 6 C -0.13 -1.11 6.22 -104.51 -0.65 -1.76 16 7 C -0.07 -0.62 10.04 -39.56 -0.40 -1.02 16 8 C -0.11 -1.27 8.66 -39.42 -0.34 -1.61 16 9 C 0.17 1.78 6.27 -83.72 -0.53 1.25 16 10 N -0.68 -6.91 5.34 -9.88 -0.05 -6.96 16 11 C 0.53 6.73 6.82 -10.99 -0.07 6.65 16 12 O -0.51 -7.99 13.95 5.55 0.08 -7.92 16 13 C 0.08 0.95 3.21 -68.86 -0.22 0.73 16 14 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 15 N -0.83 -10.58 8.94 -5.65 -0.05 -10.63 16 16 C -0.15 -2.14 4.84 -26.73 -0.13 -2.27 16 17 C -0.11 -1.95 4.92 -26.73 -0.13 -2.08 16 18 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 19 C -0.52 -14.26 9.11 -34.44 -0.31 -14.58 16 20 H 0.05 1.43 7.74 -52.49 -0.41 1.03 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.51 16 22 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 23 Si 0.89 21.09 29.54 -169.99 -5.02 16.07 16 24 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 27 C -0.12 -1.13 9.96 -39.35 -0.39 -1.52 16 28 C -0.09 -0.76 6.21 -104.58 -0.65 -1.41 16 29 C 0.15 1.30 6.91 -5.08 -0.04 1.27 16 30 H 0.08 0.19 6.70 -51.93 -0.35 -0.16 16 31 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.08 0.38 8.08 -51.93 -0.42 -0.04 16 34 H 0.08 0.37 8.08 -51.93 -0.42 -0.05 16 35 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 36 H 0.14 1.76 6.43 -52.49 -0.34 1.43 16 37 H 0.41 3.11 8.82 -40.82 -0.36 2.75 16 38 H 0.35 4.60 8.58 -39.29 -0.34 4.26 16 39 H 0.35 4.25 7.55 -39.29 -0.30 3.95 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.86 6.87 -51.93 -0.36 0.50 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.02 16 46 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 47 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 48 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 49 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 LS Contribution 405.53 15.07 6.11 6.11 Total: -1.00 -34.90 405.53 -10.03 -44.92 By element: Atomic # 1 Polarization: 13.32 SS G_CDS: -7.49 Total: 5.83 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.85 Total: -9.29 kcal Atomic # 7 Polarization: -48.75 SS G_CDS: 0.05 Total: -48.71 kcal Atomic # 8 Polarization: -15.11 SS G_CDS: 0.17 Total: -14.94 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -34.90 -10.03 -44.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327680601.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.193 kcal (2) G-P(sol) polarization free energy of solvation -34.898 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds