Wall clock time and date at job start Wed Apr 1 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.21281 * 119.99954 * 2 1 4 4 N 1.34777 * 120.00109 * 179.97438 * 2 1 3 5 5 C 1.46626 * 126.55395 * 0.03957 * 4 2 1 6 6 C 1.50810 * 107.71016 * 179.97438 * 5 4 2 7 7 C 1.38509 * 131.11162 * 179.97438 * 6 5 4 8 8 C 1.38018 * 120.19378 * 179.74318 * 7 6 5 9 9 C 1.38895 * 119.88866 * 0.50709 * 8 7 6 10 10 N 1.39923 * 120.09398 * 179.77083 * 9 8 7 11 11 C 1.34776 * 120.00196 * 326.57431 * 10 9 8 12 12 O 1.21290 * 119.99586 * 354.72224 * 11 10 9 13 13 C 1.50692 * 120.00382 * 174.72853 * 11 10 9 14 14 H 1.09004 * 109.47479 * 39.99656 * 13 11 10 15 15 N 1.46904 * 109.47475 * 159.99731 * 13 11 10 16 16 C 1.53006 * 109.47247 * 279.99573 * 13 11 10 17 17 C 1.52997 * 109.47042 * 174.99446 * 16 13 11 18 18 C 1.52998 * 109.46819 * 179.97438 * 17 16 13 19 19 C 1.50699 * 109.47169 * 180.02562 * 18 17 16 20 20 H 1.08001 * 120.00291 * 0.02562 * 19 18 17 21 21 C 1.37882 * 120.00189 * 179.97438 * 19 18 17 22 22 N 1.31517 * 119.99917 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 119.99950 * 180.02562 * 21 19 18 24 24 H 1.48500 * 109.47423 * 60.00523 * 23 21 19 25 25 H 1.48508 * 109.47053 * 180.02562 * 23 21 19 26 26 H 1.48500 * 109.47031 * 299.99950 * 23 21 19 27 27 C 1.38772 * 119.81180 * 359.49356 * 9 8 7 28 28 C 1.38128 * 108.83767 * 359.97438 * 6 5 4 29 29 C 1.46630 * 126.55712 * 179.97438 * 4 2 1 30 30 H 1.09002 * 109.47645 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47515 * 300.00183 * 1 2 3 32 32 H 1.09002 * 109.46881 * 60.00054 * 1 2 3 33 33 H 1.08998 * 109.80693 * 299.51937 * 5 4 2 34 34 H 1.08997 * 109.81791 * 60.35080 * 5 4 2 35 35 H 1.08000 * 119.91066 * 359.97438 * 7 6 5 36 36 H 1.07998 * 120.05652 * 180.25316 * 8 7 6 37 37 H 0.97001 * 120.00432 * 146.56856 * 10 9 8 38 38 H 1.00896 * 110.99955 * 59.99724 * 15 13 11 39 39 H 1.00903 * 111.00283 * 183.95300 * 15 13 11 40 40 H 1.08996 * 109.46947 * 295.00374 * 16 13 11 41 41 H 1.09004 * 109.46555 * 54.99711 * 16 13 11 42 42 H 1.08995 * 109.47553 * 300.00559 * 17 16 13 43 43 H 1.09004 * 109.47229 * 60.00677 * 17 16 13 44 44 H 1.08995 * 109.47528 * 300.00591 * 18 17 16 45 45 H 1.09005 * 109.47097 * 60.00639 * 18 17 16 46 46 H 0.96996 * 120.00211 * 179.97438 * 22 21 19 47 47 H 1.07994 * 119.97847 * 180.23416 * 27 9 8 48 48 H 1.09004 * 109.80624 * 60.48358 * 29 4 2 49 49 H 1.08993 * 109.86771 * 299.60972 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1133 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 1.5975 -2.5124 0.0003 6 6 2.7330 -3.5049 0.0004 7 6 2.7319 -4.8900 0.0008 8 6 3.9243 -5.5850 -0.0045 9 6 5.1287 -4.8932 0.0005 10 7 6.3401 -5.5935 0.0000 11 6 6.4348 -6.7767 0.6385 12 8 5.5006 -7.1889 1.2931 13 6 7.7012 -7.5873 0.5391 14 1 8.5633 -6.9221 0.5884 15 7 7.7579 -8.5455 1.6513 16 6 7.7180 -8.3464 -0.7893 17 6 9.0569 -9.0699 -0.9463 18 6 9.0734 -9.8295 -2.2743 19 6 10.3920 -10.5427 -2.4287 20 1 11.1429 -10.4627 -1.6567 21 6 10.6393 -11.2983 -3.5552 22 7 9.7247 -11.3963 -4.4952 23 14 12.2734 -12.1830 -3.7462 24 1 12.4517 -13.1408 -2.6255 25 1 12.2895 -12.9201 -5.0353 26 1 13.3782 -11.1908 -3.7301 27 6 5.1273 -3.5055 0.0001 28 6 3.9291 -2.8141 0.0001 29 6 3.6376 -1.3346 0.0001 30 1 -0.3634 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 0.9864 -2.6501 0.8923 34 1 0.9856 -2.6497 -0.8912 35 1 1.7954 -5.4278 0.0015 36 1 3.9209 -6.6650 -0.0083 37 1 7.1117 -5.2276 -0.4600 38 1 6.9688 -9.1738 1.6277 39 1 8.6277 -9.0568 1.6441 40 1 6.9075 -9.0750 -0.8016 41 1 7.5866 -7.6428 -1.6114 42 1 9.8674 -8.3413 -0.9338 43 1 9.1883 -9.7736 -0.1241 44 1 8.2630 -10.5582 -2.2863 45 1 8.9419 -9.1262 -3.0967 46 1 9.8987 -11.9275 -5.2878 47 1 6.0621 -2.9649 0.0001 48 1 4.0625 -0.8742 0.8920 49 1 4.0630 -0.8743 -0.8916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327680601.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:45 Heat of formation + Delta-G solvation = -72.410538 kcal Electronic energy + Delta-G solvation = -28641.752782 eV Core-core repulsion = 24567.077524 eV Total energy + Delta-G solvation = -4074.675258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -42.04669 -41.24525 -39.85731 -37.86962 -37.16219 -35.42428 -35.26966 -33.02015 -32.87384 -31.71597 -30.42813 -29.50737 -28.51340 -27.08599 -25.84541 -24.43332 -23.06058 -22.51864 -21.78638 -21.01564 -20.65016 -18.73899 -18.45318 -18.37298 -18.03625 -17.32222 -17.19007 -16.54605 -16.44511 -16.22199 -16.00883 -15.84031 -15.49863 -15.29749 -15.11559 -14.72811 -14.52273 -14.29504 -14.25805 -14.00098 -13.74844 -13.73034 -13.62190 -13.43574 -13.34354 -12.99783 -12.91572 -12.73391 -12.55489 -12.45377 -12.33799 -12.06187 -11.51123 -11.45040 -11.38515 -11.26353 -11.15836 -10.82869 -10.55247 -10.08286 -9.75102 -9.68551 -8.99624 -8.20339 -6.31488 0.10655 0.28111 1.40784 1.42930 1.47835 1.50252 1.50907 1.75986 1.94048 2.40777 2.65142 3.13289 3.17937 3.37692 3.54613 3.66005 3.77548 3.94575 3.95969 4.05874 4.22244 4.30905 4.39224 4.39671 4.45350 4.49884 4.51719 4.54933 4.55718 4.66189 4.67834 4.75527 4.89403 4.96252 5.00534 5.06011 5.13521 5.17962 5.23660 5.25544 5.41685 5.47714 5.52099 5.73267 5.85292 5.90827 6.02455 6.23696 6.35708 6.39069 6.47138 6.86524 7.00033 7.04297 7.38362 8.90900 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.021717 B = 0.001599 C = 0.001558 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.015813 B =17501.913658 C =17967.019603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.528 3.472 3 O -0.596 6.596 4 N -0.619 5.619 5 C 0.149 3.851 6 C -0.129 4.129 7 C -0.071 4.071 8 C -0.135 4.135 9 C 0.145 3.855 10 N -0.664 5.664 11 C 0.525 3.475 12 O -0.544 6.544 13 C 0.088 3.912 14 H 0.127 0.873 15 N -0.832 5.832 16 C -0.135 4.135 17 C -0.095 4.095 18 C 0.022 3.978 19 C -0.543 4.543 20 H 0.064 0.936 21 C -0.001 4.001 22 N -0.934 5.934 23 Si 0.963 3.037 24 H -0.267 1.267 25 H -0.286 1.286 26 H -0.266 1.266 27 C -0.122 4.122 28 C -0.094 4.094 29 C 0.150 3.850 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.153 0.847 36 H 0.122 0.878 37 H 0.427 0.573 38 H 0.347 0.653 39 H 0.359 0.641 40 H 0.050 0.950 41 H 0.072 0.928 42 H 0.065 0.935 43 H 0.056 0.944 44 H -0.015 1.015 45 H -0.008 1.008 46 H 0.262 0.738 47 H 0.148 0.852 48 H 0.078 0.922 49 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.948 19.784 10.267 28.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.320 3.680 3 O -0.476 6.476 4 N -0.353 5.353 5 C 0.027 3.973 6 C -0.130 4.130 7 C -0.089 4.089 8 C -0.155 4.155 9 C 0.051 3.949 10 N -0.310 5.310 11 C 0.314 3.686 12 O -0.420 6.420 13 C -0.027 4.027 14 H 0.145 0.855 15 N -0.365 5.365 16 C -0.175 4.175 17 C -0.132 4.132 18 C -0.015 4.015 19 C -0.581 4.581 20 H 0.082 0.918 21 C -0.199 4.199 22 N -0.574 5.574 23 Si 0.787 3.213 24 H -0.192 1.192 25 H -0.212 1.212 26 H -0.190 1.190 27 C -0.142 4.142 28 C -0.096 4.096 29 C 0.027 3.973 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.170 0.830 36 H 0.140 0.860 37 H 0.266 0.734 38 H 0.160 0.840 39 H 0.175 0.825 40 H 0.069 0.931 41 H 0.090 0.910 42 H 0.083 0.917 43 H 0.075 0.925 44 H 0.004 0.996 45 H 0.010 0.990 46 H 0.071 0.929 47 H 0.166 0.834 48 H 0.096 0.904 49 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -18.384 20.637 11.060 29.769 hybrid contribution 1.463 -1.444 -1.521 2.557 sum -16.921 19.193 9.540 27.308 Atomic orbital electron populations 1.21934 0.86934 1.06674 1.06448 1.21317 0.92076 0.80450 0.74133 1.90727 1.72055 1.32147 1.52719 1.48192 1.07007 1.06812 1.73265 1.20481 0.93770 0.78014 1.05009 1.20412 0.95348 0.93978 1.03267 1.20495 0.98461 0.91875 0.98109 1.21147 0.91721 1.00585 1.02064 1.17706 0.86079 0.91009 1.00150 1.43461 1.12870 1.20962 1.53716 1.21016 0.89807 0.80817 0.77002 1.90669 1.40863 1.70235 1.40199 1.21362 0.95584 0.95287 0.90501 0.85528 1.58708 1.09146 1.24208 1.44423 1.22240 0.98636 0.99608 0.97000 1.21432 0.95598 0.98452 0.97762 1.19012 0.95121 0.94069 0.93275 1.21713 1.02109 1.29826 1.04458 0.91817 1.25980 1.00668 0.97567 0.95698 1.70090 1.36122 1.41673 1.09545 0.85537 0.79581 0.78768 0.77391 1.19208 1.21193 1.19038 1.20241 0.98555 0.91260 1.04165 1.20042 0.93800 0.94815 1.00907 1.20098 0.82385 0.91938 1.02835 0.87665 0.87463 0.87458 0.87428 0.87256 0.82966 0.86018 0.73438 0.84003 0.82514 0.93094 0.90951 0.91657 0.92492 0.99637 0.98982 0.92895 0.83398 0.90370 0.90154 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.96 10.23 71.23 0.73 -0.24 16 2 C 0.53 8.63 7.98 87.66 0.70 9.33 16 3 O -0.60 -15.68 17.47 -3.03 -0.05 -15.74 16 4 N -0.62 -8.97 3.34 -829.49 -2.77 -11.74 16 5 C 0.15 1.36 5.85 85.64 0.50 1.86 16 6 C -0.13 -1.90 6.22 -19.79 -0.12 -2.02 16 7 C -0.07 -1.16 10.04 22.28 0.22 -0.93 16 8 C -0.13 -2.98 8.66 22.38 0.19 -2.79 16 9 C 0.15 3.02 6.27 38.13 0.24 3.26 16 10 N -0.66 -13.11 5.34 -303.57 -1.62 -14.73 16 11 C 0.53 13.21 6.82 87.65 0.60 13.81 16 12 O -0.54 -17.18 13.95 -3.06 -0.04 -17.22 16 13 C 0.09 2.06 3.21 44.17 0.14 2.20 16 14 H 0.13 2.39 8.14 -2.38 -0.02 2.37 16 15 N -0.83 -20.44 8.94 -171.79 -1.54 -21.97 16 16 C -0.13 -3.87 4.84 30.60 0.15 -3.72 16 17 C -0.09 -3.35 4.92 30.59 0.15 -3.20 16 18 C 0.02 1.11 4.97 29.85 0.15 1.26 16 19 C -0.54 -29.62 9.11 25.60 0.23 -29.38 16 20 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 21 C 0.00 -0.08 5.46 84.66 0.46 0.38 16 22 N -0.93 -55.90 13.29 21.45 0.28 -55.62 16 23 Si 0.96 43.08 29.54 68.60 2.03 45.11 16 24 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 25 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 27 C -0.12 -2.09 9.96 22.42 0.22 -1.86 16 28 C -0.09 -1.57 6.21 -19.84 -0.12 -1.69 16 29 C 0.15 2.46 6.91 85.64 0.59 3.05 16 30 H 0.10 0.06 6.70 -2.39 -0.02 0.05 16 31 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.11 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.11 0.55 8.08 -2.39 -0.02 0.53 16 34 H 0.11 0.53 8.08 -2.39 -0.02 0.51 16 35 H 0.15 1.69 8.06 -2.91 -0.02 1.66 16 36 H 0.12 3.16 6.43 -2.91 -0.02 3.14 16 37 H 0.43 5.86 8.82 -92.71 -0.82 5.04 16 38 H 0.35 9.05 8.58 -89.70 -0.77 8.28 16 39 H 0.36 8.12 7.55 -89.69 -0.68 7.45 16 40 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.07 2.00 8.14 -2.38 -0.02 1.98 16 42 H 0.06 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.06 1.92 6.87 -2.38 -0.02 1.90 16 44 H -0.01 -0.81 8.14 -2.39 -0.02 -0.83 16 45 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 46 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 47 H 0.15 1.88 8.06 -2.91 -0.02 1.86 16 48 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 49 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -77.89 405.53 0.06 -77.83 By element: Atomic # 1 Polarization: 26.02 SS G_CDS: -1.27 Total: 24.75 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 5.04 Total: -10.67 kcal Atomic # 7 Polarization: -98.42 SS G_CDS: -5.64 Total: -104.06 kcal Atomic # 8 Polarization: -32.86 SS G_CDS: -0.10 Total: -32.96 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -77.89 0.06 -77.83 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327680601.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.422 kcal (2) G-P(sol) polarization free energy of solvation -77.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds