Wall clock time and date at job start Wed Apr 1 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21289 * 119.99539 * 2 1 4 4 N 1.34776 * 120.00540 * 179.97438 * 2 1 3 5 5 C 1.46622 * 126.55152 * 0.02650 * 4 2 1 6 6 C 1.50806 * 107.70799 * 179.97438 * 5 4 2 7 7 C 1.38517 * 131.11200 * 180.02562 * 6 5 4 8 8 C 1.38014 * 120.19481 * 179.97438 * 7 6 5 9 9 C 1.38901 * 119.89122 * 0.02562 * 8 7 6 10 10 N 1.39922 * 120.09332 * 180.02562 * 9 8 7 11 11 C 1.34770 * 120.00504 * 35.07063 * 10 9 8 12 12 O 1.21295 * 119.99663 * 355.37841 * 11 10 9 13 13 C 1.50700 * 120.00644 * 175.37376 * 11 10 9 14 14 H 1.09003 * 109.46352 * 320.00710 * 13 11 10 15 15 N 1.46900 * 109.47574 * 200.00519 * 13 11 10 16 16 C 1.52996 * 109.46823 * 79.99999 * 13 11 10 17 17 C 1.53006 * 109.46894 * 185.00529 * 16 13 11 18 18 C 1.53007 * 109.46943 * 180.02562 * 17 16 13 19 19 C 1.50698 * 109.46705 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00491 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99599 * 180.02562 * 19 18 17 22 22 N 1.31508 * 119.99858 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99841 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46795 * 89.99804 * 23 21 19 25 25 H 1.48502 * 109.47072 * 209.99851 * 23 21 19 26 26 H 1.48495 * 109.47153 * 330.00128 * 23 21 19 27 27 C 1.38778 * 119.80899 * 0.27289 * 9 8 7 28 28 C 1.38129 * 108.83993 * 359.97438 * 6 5 4 29 29 C 1.46620 * 126.55731 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.46810 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47860 * 300.00219 * 1 2 3 32 32 H 1.09000 * 109.47376 * 60.00996 * 1 2 3 33 33 H 1.09000 * 109.80865 * 60.42862 * 5 4 2 34 34 H 1.08999 * 109.81493 * 299.52758 * 5 4 2 35 35 H 1.07999 * 119.90479 * 359.97312 * 7 6 5 36 36 H 1.07998 * 120.05767 * 179.97438 * 8 7 6 37 37 H 0.97005 * 119.99666 * 215.07585 * 10 9 8 38 38 H 1.00894 * 110.99324 * 299.99834 * 15 13 11 39 39 H 1.00899 * 110.99779 * 63.95227 * 15 13 11 40 40 H 1.09003 * 109.47361 * 65.00612 * 16 13 11 41 41 H 1.09002 * 109.47594 * 305.00065 * 16 13 11 42 42 H 1.08993 * 109.47258 * 60.00649 * 17 16 13 43 43 H 1.09002 * 109.47080 * 299.99860 * 17 16 13 44 44 H 1.09002 * 109.46852 * 299.99673 * 18 17 16 45 45 H 1.08993 * 109.47148 * 59.99612 * 18 17 16 46 46 H 0.97009 * 119.99919 * 179.97438 * 22 21 19 47 47 H 1.07998 * 119.97331 * 179.71067 * 27 9 8 48 48 H 1.09001 * 109.81275 * 60.47057 * 29 4 2 49 49 H 1.08998 * 109.87313 * 299.60837 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.5976 -2.5123 0.0006 6 6 2.7332 -3.5047 0.0006 7 6 2.7322 -4.8899 0.0002 8 6 3.9246 -5.5848 -0.0002 9 6 5.1291 -4.8929 0.0003 10 7 6.3404 -5.5932 -0.0006 11 6 6.4458 -6.7567 -0.6725 12 8 5.4693 -7.2394 -1.2061 13 6 7.7766 -7.4582 -0.7608 14 1 8.5663 -6.7216 -0.9093 15 7 7.7621 -8.3954 -1.8919 16 6 8.0345 -8.2279 0.5361 17 6 9.4375 -8.8371 0.4972 18 6 9.6951 -9.6073 1.7939 19 6 11.0772 -10.2068 1.7559 20 1 11.7085 -10.0541 0.8930 21 6 11.5353 -10.9511 2.8223 22 7 10.7664 -11.1374 3.8727 23 14 13.2483 -11.6948 2.7749 24 1 14.2221 -10.7317 3.3486 25 1 13.2655 -12.9491 3.5697 26 1 13.6189 -11.9949 1.3685 27 6 5.1275 -3.5052 0.0070 28 6 3.9293 -2.8139 0.0000 29 6 3.6376 -1.3344 0.0001 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8901 33 1 0.9867 -2.6501 -0.8916 34 1 0.9866 -2.6500 0.8926 35 1 1.7957 -5.4277 0.0002 36 1 3.9213 -6.6648 -0.0001 37 1 7.1045 -5.2412 0.4824 38 1 7.0380 -9.0887 -1.7777 39 1 7.6578 -7.9043 -2.7671 40 1 7.2959 -9.0228 0.6398 41 1 7.9573 -7.5473 1.3840 42 1 10.1760 -8.0422 0.3936 43 1 9.5147 -9.5177 -0.3507 44 1 9.6178 -8.9270 2.6421 45 1 8.9565 -10.4022 1.8972 46 1 11.0886 -11.6614 4.6229 47 1 6.0624 -2.9646 0.0122 48 1 4.0626 -0.8739 0.8919 49 1 4.0631 -0.8742 -0.8916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001327680603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:52 Heat of formation + Delta-G solvation = -48.119378 kcal Electronic energy + Delta-G solvation = -28603.627494 eV Core-core repulsion = 24530.005579 eV Total energy + Delta-G solvation = -4073.621914 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.36886 -40.50174 -39.14142 -36.97106 -35.78782 -34.67125 -33.40691 -32.27449 -31.41994 -31.06791 -29.92092 -28.31203 -27.65417 -25.79909 -24.81509 -22.96512 -22.33362 -21.53266 -20.21763 -20.10221 -20.02222 -17.88048 -17.58329 -17.26740 -16.75933 -16.57165 -16.32429 -15.89265 -15.41652 -15.21610 -14.91682 -14.72741 -14.56148 -14.38804 -14.16195 -13.87614 -13.66023 -13.51092 -13.16240 -13.08863 -12.97569 -12.88913 -12.51832 -12.41842 -12.20450 -11.81822 -11.59359 -11.43590 -11.21484 -10.78844 -10.73437 -10.58453 -10.47271 -10.47149 -10.28992 -9.66766 -9.44248 -9.27965 -9.09225 -9.07832 -8.72424 -8.33501 -8.32358 -5.98134 -3.99914 0.78944 0.94784 2.09963 2.29171 2.34719 2.75251 3.31364 3.33025 3.39421 3.43288 3.77403 3.93852 4.26453 4.35410 4.48202 4.51869 4.62752 4.67434 4.80753 4.85472 4.91530 4.97619 5.02790 5.07361 5.09593 5.15783 5.25906 5.26964 5.30205 5.37898 5.51599 5.55934 5.80780 5.81939 5.94123 6.03101 6.11543 6.12218 6.34933 6.61806 6.74754 6.91284 6.93860 6.95594 7.13356 7.18809 7.39484 7.59960 7.70995 7.82158 7.85679 8.02834 8.46040 9.07646 9.64109 11.13203 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023298 B = 0.001571 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.544560 B =17823.241023 C =18245.666734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.535 3.465 3 O -0.542 6.542 4 N -0.617 5.617 5 C 0.149 3.851 6 C -0.131 4.131 7 C -0.073 4.073 8 C -0.114 4.114 9 C 0.158 3.842 10 N -0.673 5.673 11 C 0.484 3.516 12 O -0.529 6.529 13 C 0.081 3.919 14 H 0.105 0.895 15 N -0.809 5.809 16 C -0.105 4.105 17 C -0.100 4.100 18 C 0.019 3.981 19 C -0.518 4.518 20 H 0.055 0.945 21 C 0.055 3.945 22 N -0.897 5.897 23 Si 0.891 3.109 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.274 1.274 27 C -0.123 4.123 28 C -0.087 4.087 29 C 0.152 3.848 30 H 0.078 0.922 31 H 0.098 0.902 32 H 0.098 0.902 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.130 0.870 36 H 0.146 0.854 37 H 0.416 0.584 38 H 0.351 0.649 39 H 0.339 0.661 40 H 0.064 0.936 41 H 0.063 0.937 42 H 0.045 0.955 43 H 0.064 0.936 44 H 0.012 0.988 45 H 0.014 0.986 46 H 0.259 0.741 47 H 0.130 0.870 48 H 0.084 0.916 49 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.472 19.540 -9.168 30.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.325 3.675 3 O -0.419 6.419 4 N -0.353 5.353 5 C 0.027 3.973 6 C -0.132 4.132 7 C -0.092 4.092 8 C -0.134 4.134 9 C 0.063 3.937 10 N -0.318 5.318 11 C 0.271 3.729 12 O -0.404 6.404 13 C -0.036 4.036 14 H 0.123 0.877 15 N -0.337 5.337 16 C -0.143 4.143 17 C -0.138 4.138 18 C -0.018 4.018 19 C -0.556 4.556 20 H 0.074 0.926 21 C -0.145 4.145 22 N -0.537 5.537 23 Si 0.719 3.281 24 H -0.207 1.207 25 H -0.213 1.213 26 H -0.198 1.198 27 C -0.143 4.143 28 C -0.088 4.088 29 C 0.029 3.971 30 H 0.097 0.903 31 H 0.117 0.883 32 H 0.116 0.884 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.148 0.852 36 H 0.164 0.836 37 H 0.252 0.748 38 H 0.166 0.834 39 H 0.152 0.848 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.031 0.969 45 H 0.033 0.967 46 H 0.069 0.931 47 H 0.148 0.852 48 H 0.102 0.898 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -21.102 19.507 -9.193 30.172 hybrid contribution 0.354 0.015 0.204 0.409 sum -20.748 19.522 -8.989 29.873 Atomic orbital electron populations 1.21880 0.90627 1.04648 1.05623 1.20460 0.90405 0.81233 0.75426 1.90759 1.70701 1.30296 1.50112 1.48048 1.07193 1.05968 1.74045 1.20278 0.94448 0.79966 1.02647 1.20156 0.94592 0.93921 1.04557 1.20353 0.98390 0.91501 0.98969 1.21276 0.90338 1.01547 1.00273 1.17654 0.86381 0.90377 0.99238 1.43783 1.12681 1.23468 1.51867 1.22931 0.93621 0.79900 0.76409 1.90672 1.39318 1.64408 1.45989 1.21823 0.91205 0.94936 0.95589 0.87738 1.59031 1.55298 1.16252 1.03165 1.21697 1.01347 0.99091 0.92208 1.21547 0.91552 0.99309 1.01366 1.19125 0.96547 0.94819 0.91324 1.21273 1.00228 1.31712 1.02394 0.92640 1.25029 0.97417 0.96478 0.95610 1.69967 1.36439 1.40573 1.06675 0.86614 0.84799 0.78667 0.78044 1.20745 1.21291 1.19844 1.20119 0.97515 0.91897 1.04819 1.19920 0.93423 0.94631 1.00859 1.20138 0.81551 0.92206 1.03183 0.90293 0.88346 0.88371 0.89853 0.89781 0.85244 0.83612 0.74761 0.83408 0.84822 0.91730 0.91800 0.93576 0.91742 0.96948 0.96746 0.93098 0.85174 0.89804 0.89888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.69 10.23 36.00 0.37 -0.32 16 2 C 0.53 4.59 7.98 -10.99 -0.09 4.51 16 3 O -0.54 -6.99 17.47 5.55 0.10 -6.90 16 4 N -0.62 -4.84 3.34 -176.12 -0.59 -5.43 16 5 C 0.15 0.87 5.85 -5.08 -0.03 0.84 16 6 C -0.13 -1.05 6.22 -104.51 -0.65 -1.70 16 7 C -0.07 -0.62 10.04 -39.56 -0.40 -1.02 16 8 C -0.11 -1.22 8.70 -39.42 -0.34 -1.56 16 9 C 0.16 1.61 6.30 -83.72 -0.53 1.09 16 10 N -0.67 -6.53 5.34 -9.88 -0.05 -6.58 16 11 C 0.48 5.75 6.91 -10.99 -0.08 5.68 16 12 O -0.53 -7.57 13.69 5.54 0.08 -7.49 16 13 C 0.08 0.97 3.15 -68.87 -0.22 0.75 16 14 H 0.10 1.10 8.14 -51.93 -0.42 0.67 16 15 N -0.81 -9.96 8.44 -5.65 -0.05 -10.01 16 16 C -0.11 -1.58 4.84 -26.73 -0.13 -1.71 16 17 C -0.10 -1.93 5.04 -26.72 -0.13 -2.07 16 18 C 0.02 0.47 4.97 -27.88 -0.14 0.34 16 19 C -0.52 -14.54 9.11 -34.44 -0.31 -14.85 16 20 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 21 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 22 N -0.90 -26.85 13.29 55.43 0.74 -26.12 16 23 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 24 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 25 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 26 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 27 C -0.12 -1.06 9.97 -39.35 -0.39 -1.46 16 28 C -0.09 -0.75 6.21 -104.58 -0.65 -1.40 16 29 C 0.15 1.26 6.90 -5.08 -0.04 1.22 16 30 H 0.08 0.17 6.70 -51.93 -0.35 -0.18 16 31 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16 34 H 0.08 0.35 8.08 -51.93 -0.42 -0.07 16 35 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 36 H 0.15 1.78 6.23 -52.49 -0.33 1.45 16 37 H 0.42 3.03 8.82 -40.82 -0.36 2.67 16 38 H 0.35 4.48 8.58 -39.29 -0.34 4.14 16 39 H 0.34 3.60 9.06 -39.29 -0.36 3.24 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 42 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 43 H 0.06 1.29 7.75 -51.93 -0.40 0.89 16 44 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 45 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 47 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 48 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 49 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 407.20 15.07 6.14 6.14 Total: -1.00 -35.37 407.20 -10.10 -45.47 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.59 Total: 4.54 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -3.85 Total: -10.19 kcal Atomic # 7 Polarization: -48.18 SS G_CDS: 0.05 Total: -48.13 kcal Atomic # 8 Polarization: -14.56 SS G_CDS: 0.17 Total: -14.39 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -35.37 -10.10 -45.47 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327680603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.647 kcal (2) G-P(sol) polarization free energy of solvation -35.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds