Wall clock time and date at job start Wed Apr 1 2020 05:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21289 * 119.99539 * 2 1 4 4 N 1.34776 * 120.00540 * 179.97438 * 2 1 3 5 5 C 1.46622 * 126.55152 * 0.02650 * 4 2 1 6 6 C 1.50806 * 107.70799 * 179.97438 * 5 4 2 7 7 C 1.38517 * 131.11200 * 180.02562 * 6 5 4 8 8 C 1.38014 * 120.19481 * 179.97438 * 7 6 5 9 9 C 1.38901 * 119.89122 * 0.02562 * 8 7 6 10 10 N 1.39922 * 120.09332 * 180.02562 * 9 8 7 11 11 C 1.34770 * 120.00504 * 35.07063 * 10 9 8 12 12 O 1.21295 * 119.99663 * 355.37841 * 11 10 9 13 13 C 1.50700 * 120.00644 * 175.37376 * 11 10 9 14 14 H 1.09003 * 109.46352 * 320.00710 * 13 11 10 15 15 N 1.46900 * 109.47574 * 200.00519 * 13 11 10 16 16 C 1.52996 * 109.46823 * 79.99999 * 13 11 10 17 17 C 1.53006 * 109.46894 * 185.00529 * 16 13 11 18 18 C 1.53007 * 109.46943 * 180.02562 * 17 16 13 19 19 C 1.50698 * 109.46705 * 180.02562 * 18 17 16 20 20 H 1.07997 * 120.00491 * 359.97438 * 19 18 17 21 21 C 1.37883 * 119.99599 * 180.02562 * 19 18 17 22 22 N 1.31508 * 119.99858 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99841 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.46795 * 89.99804 * 23 21 19 25 25 H 1.48502 * 109.47072 * 209.99851 * 23 21 19 26 26 H 1.48495 * 109.47153 * 330.00128 * 23 21 19 27 27 C 1.38778 * 119.80899 * 0.27289 * 9 8 7 28 28 C 1.38129 * 108.83993 * 359.97438 * 6 5 4 29 29 C 1.46620 * 126.55731 * 179.97438 * 4 2 1 30 30 H 1.09000 * 109.46810 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47860 * 300.00219 * 1 2 3 32 32 H 1.09000 * 109.47376 * 60.00996 * 1 2 3 33 33 H 1.09000 * 109.80865 * 60.42862 * 5 4 2 34 34 H 1.08999 * 109.81493 * 299.52758 * 5 4 2 35 35 H 1.07999 * 119.90479 * 359.97312 * 7 6 5 36 36 H 1.07998 * 120.05767 * 179.97438 * 8 7 6 37 37 H 0.97005 * 119.99666 * 215.07585 * 10 9 8 38 38 H 1.00894 * 110.99324 * 299.99834 * 15 13 11 39 39 H 1.00899 * 110.99779 * 63.95227 * 15 13 11 40 40 H 1.09003 * 109.47361 * 65.00612 * 16 13 11 41 41 H 1.09002 * 109.47594 * 305.00065 * 16 13 11 42 42 H 1.08993 * 109.47258 * 60.00649 * 17 16 13 43 43 H 1.09002 * 109.47080 * 299.99860 * 17 16 13 44 44 H 1.09002 * 109.46852 * 299.99673 * 18 17 16 45 45 H 1.08993 * 109.47148 * 59.99612 * 18 17 16 46 46 H 0.97009 * 119.99919 * 179.97438 * 22 21 19 47 47 H 1.07998 * 119.97331 * 179.71067 * 27 9 8 48 48 H 1.09001 * 109.81275 * 60.47057 * 29 4 2 49 49 H 1.08998 * 109.87313 * 299.60837 * 29 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1133 1.0504 0.0000 4 7 2.1810 -1.1671 0.0005 5 6 1.5976 -2.5123 0.0006 6 6 2.7332 -3.5047 0.0006 7 6 2.7322 -4.8899 0.0002 8 6 3.9246 -5.5848 -0.0002 9 6 5.1291 -4.8929 0.0003 10 7 6.3404 -5.5932 -0.0006 11 6 6.4458 -6.7567 -0.6725 12 8 5.4693 -7.2394 -1.2061 13 6 7.7766 -7.4582 -0.7608 14 1 8.5663 -6.7216 -0.9093 15 7 7.7621 -8.3954 -1.8919 16 6 8.0345 -8.2279 0.5361 17 6 9.4375 -8.8371 0.4972 18 6 9.6951 -9.6073 1.7939 19 6 11.0772 -10.2068 1.7559 20 1 11.7085 -10.0541 0.8930 21 6 11.5353 -10.9511 2.8223 22 7 10.7664 -11.1374 3.8727 23 14 13.2483 -11.6948 2.7749 24 1 14.2221 -10.7317 3.3486 25 1 13.2655 -12.9491 3.5697 26 1 13.6189 -11.9949 1.3685 27 6 5.1275 -3.5052 0.0070 28 6 3.9293 -2.8139 0.0000 29 6 3.6376 -1.3344 0.0001 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8900 32 1 -0.3634 0.5137 -0.8901 33 1 0.9867 -2.6501 -0.8916 34 1 0.9866 -2.6500 0.8926 35 1 1.7957 -5.4277 0.0002 36 1 3.9213 -6.6648 -0.0001 37 1 7.1045 -5.2412 0.4824 38 1 7.0380 -9.0887 -1.7777 39 1 7.6578 -7.9043 -2.7671 40 1 7.2959 -9.0228 0.6398 41 1 7.9573 -7.5473 1.3840 42 1 10.1760 -8.0422 0.3936 43 1 9.5147 -9.5177 -0.3507 44 1 9.6178 -8.9270 2.6421 45 1 8.9565 -10.4022 1.8972 46 1 11.0886 -11.6614 4.6229 47 1 6.0624 -2.9646 0.0122 48 1 4.0626 -0.8739 0.8919 49 1 4.0631 -0.8742 -0.8916 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001327680603.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:50 Heat of formation + Delta-G solvation = -72.823063 kcal Electronic energy + Delta-G solvation = -28604.698726 eV Core-core repulsion = 24530.005579 eV Total energy + Delta-G solvation = -4074.693146 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.08576 -41.30213 -39.88549 -37.78917 -37.02148 -35.46161 -35.23838 -33.13995 -32.89318 -31.72565 -30.44085 -29.61619 -28.51446 -26.94413 -25.83304 -24.36655 -23.04772 -22.45939 -21.70805 -21.04757 -20.67267 -18.72478 -18.43191 -18.31177 -18.01926 -17.34308 -17.26946 -16.95743 -16.47363 -16.29797 -15.97605 -15.75284 -15.52108 -15.31109 -15.19043 -14.65405 -14.50634 -14.34543 -14.27279 -14.02158 -13.74118 -13.61812 -13.52378 -13.38231 -13.10743 -13.00731 -12.87206 -12.76311 -12.48581 -12.36710 -12.16163 -12.09000 -11.55769 -11.39955 -11.30886 -11.20985 -11.17167 -10.94406 -10.51008 -10.11244 -9.80674 -9.70029 -9.03775 -8.16513 -6.26642 0.07815 0.25722 1.39200 1.42154 1.43188 1.48772 1.54450 1.75634 1.96566 2.43941 2.61622 3.16602 3.16859 3.35563 3.42759 3.67330 3.76091 3.92987 3.98001 4.14548 4.20481 4.31162 4.37749 4.43780 4.48184 4.50588 4.52440 4.53177 4.63297 4.66559 4.67539 4.87819 4.92982 4.94698 5.04731 5.11833 5.14131 5.24197 5.28175 5.35403 5.39506 5.45751 5.61994 5.85750 5.88830 5.95094 6.01441 6.30045 6.31444 6.37285 6.46514 6.91444 6.96503 6.98667 7.42492 8.95052 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.023298 B = 0.001571 C = 0.001534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.544560 B =17823.241023 C =18245.666734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.528 3.472 3 O -0.596 6.596 4 N -0.619 5.619 5 C 0.149 3.851 6 C -0.127 4.127 7 C -0.073 4.073 8 C -0.134 4.134 9 C 0.138 3.862 10 N -0.661 5.661 11 C 0.488 3.512 12 O -0.555 6.555 13 C 0.091 3.909 14 H 0.128 0.872 15 N -0.817 5.817 16 C -0.096 4.096 17 C -0.084 4.084 18 C 0.020 3.980 19 C -0.540 4.540 20 H 0.060 0.940 21 C -0.002 4.002 22 N -0.934 5.934 23 Si 0.962 3.038 24 H -0.272 1.272 25 H -0.284 1.284 26 H -0.264 1.264 27 C -0.120 4.120 28 C -0.096 4.096 29 C 0.150 3.850 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.110 0.890 35 H 0.152 0.848 36 H 0.126 0.874 37 H 0.427 0.573 38 H 0.348 0.652 39 H 0.350 0.650 40 H 0.049 0.951 41 H 0.074 0.926 42 H 0.056 0.944 43 H 0.057 0.943 44 H -0.007 1.007 45 H -0.015 1.015 46 H 0.262 0.738 47 H 0.148 0.852 48 H 0.080 0.920 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.088 20.483 -9.927 31.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.320 3.680 3 O -0.476 6.476 4 N -0.353 5.353 5 C 0.027 3.973 6 C -0.128 4.128 7 C -0.092 4.092 8 C -0.154 4.154 9 C 0.044 3.956 10 N -0.307 5.307 11 C 0.275 3.725 12 O -0.433 6.433 13 C -0.025 4.025 14 H 0.145 0.855 15 N -0.346 5.346 16 C -0.134 4.134 17 C -0.122 4.122 18 C -0.017 4.017 19 C -0.578 4.578 20 H 0.078 0.922 21 C -0.199 4.199 22 N -0.575 5.575 23 Si 0.787 3.213 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.188 1.188 27 C -0.140 4.140 28 C -0.097 4.097 29 C 0.027 3.973 30 H 0.123 0.877 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.126 0.874 34 H 0.127 0.873 35 H 0.170 0.830 36 H 0.144 0.856 37 H 0.266 0.734 38 H 0.161 0.839 39 H 0.164 0.836 40 H 0.067 0.933 41 H 0.093 0.907 42 H 0.075 0.925 43 H 0.075 0.925 44 H 0.011 0.989 45 H 0.003 0.997 46 H 0.071 0.929 47 H 0.165 0.835 48 H 0.098 0.902 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.721 20.456 -9.956 31.454 hybrid contribution 0.496 -0.261 0.464 0.728 sum -21.225 20.195 -9.492 30.796 Atomic orbital electron populations 1.21935 0.86915 1.06675 1.06459 1.21325 0.92082 0.80452 0.74126 1.90732 1.72061 1.32147 1.52695 1.48186 1.06992 1.06810 1.73292 1.20489 0.93790 0.78024 1.05012 1.20432 0.95336 0.94006 1.03055 1.20526 0.98542 0.91850 0.98252 1.21271 0.91625 1.00837 1.01647 1.17781 0.86254 0.90986 1.00600 1.43627 1.13170 1.22762 1.51162 1.22749 0.92977 0.80352 0.76427 1.90668 1.39964 1.65302 1.47325 1.21650 0.92141 0.94849 0.93816 0.85455 1.59037 1.55200 1.16512 1.03850 1.21492 0.98175 0.99107 0.94655 1.21286 0.94436 0.98863 0.97612 1.19068 0.94799 0.94113 0.93709 1.21748 1.01498 1.31936 1.02593 0.92187 1.25967 1.01799 0.96968 0.95196 1.70099 1.38564 1.41407 1.07444 0.85490 0.79548 0.77803 0.78473 1.19701 1.20991 1.18813 1.20267 0.98512 0.91341 1.03923 1.20044 0.93823 0.94801 1.01029 1.20096 0.82397 0.91965 1.02825 0.87659 0.87456 0.87456 0.87397 0.87260 0.83021 0.85630 0.73408 0.83859 0.83602 0.93251 0.90717 0.92488 0.92472 0.98906 0.99676 0.92946 0.83451 0.90217 0.90367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 10.23 71.23 0.73 -0.16 16 2 C 0.53 8.37 7.98 87.66 0.70 9.07 16 3 O -0.60 -15.43 17.47 -3.06 -0.05 -15.48 16 4 N -0.62 -8.61 3.34 -829.51 -2.77 -11.38 16 5 C 0.15 1.26 5.85 85.64 0.50 1.76 16 6 C -0.13 -1.77 6.22 -19.79 -0.12 -1.89 16 7 C -0.07 -1.13 10.04 22.28 0.22 -0.90 16 8 C -0.13 -2.81 8.70 22.38 0.19 -2.61 16 9 C 0.14 2.72 6.30 38.14 0.24 2.96 16 10 N -0.66 -12.26 5.34 -303.55 -1.62 -13.88 16 11 C 0.49 11.30 6.91 87.66 0.61 11.90 16 12 O -0.56 -15.94 13.69 -3.08 -0.04 -15.98 16 13 C 0.09 2.09 3.15 44.17 0.14 2.23 16 14 H 0.13 2.37 8.14 -2.39 -0.02 2.35 16 15 N -0.82 -19.50 8.44 -171.80 -1.45 -20.95 16 16 C -0.10 -2.87 4.84 30.59 0.15 -2.72 16 17 C -0.08 -3.25 5.04 30.60 0.15 -3.09 16 18 C 0.02 1.04 4.97 29.85 0.15 1.19 16 19 C -0.54 -30.59 9.11 25.60 0.23 -30.36 16 20 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 21 C 0.00 -0.11 5.46 84.66 0.46 0.35 16 22 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 23 Si 0.96 44.24 29.54 68.60 2.03 46.26 16 24 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 25 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 26 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 27 C -0.12 -1.95 9.97 22.42 0.22 -1.73 16 28 C -0.10 -1.52 6.21 -19.84 -0.12 -1.64 16 29 C 0.15 2.37 6.90 85.64 0.59 2.96 16 30 H 0.10 0.01 6.70 -2.39 -0.02 -0.01 16 31 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.11 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.11 0.47 8.08 -2.39 -0.02 0.45 16 34 H 0.11 0.46 8.08 -2.39 -0.02 0.44 16 35 H 0.15 1.55 8.06 -2.91 -0.02 1.53 16 36 H 0.13 3.15 6.23 -2.91 -0.02 3.14 16 37 H 0.43 5.64 8.82 -92.70 -0.82 4.82 16 38 H 0.35 8.85 8.58 -89.70 -0.77 8.08 16 39 H 0.35 7.04 9.06 -89.69 -0.81 6.23 16 40 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 41 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 42 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 43 H 0.06 2.28 7.75 -2.39 -0.02 2.26 16 44 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 45 H -0.02 -0.86 8.14 -2.39 -0.02 -0.88 16 46 H 0.26 15.01 8.31 -92.70 -0.77 14.24 16 47 H 0.15 1.77 8.06 -2.91 -0.02 1.74 16 48 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 49 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 Total: -1.00 -78.79 407.20 0.02 -78.77 By element: Atomic # 1 Polarization: 23.35 SS G_CDS: -1.41 Total: 21.95 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 5.05 Total: -12.67 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -5.55 Total: -102.85 kcal Atomic # 8 Polarization: -31.37 SS G_CDS: -0.10 Total: -31.46 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -78.79 0.02 -78.77 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001327680603.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.947 kcal (2) G-P(sol) polarization free energy of solvation -78.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.020 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds