Wall clock time and date at job start Wed Apr 1 2020 04:30:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46742 * 2 1 4 4 C 1.46906 * 111.00129 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47496 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47531 * 180.02562 * 5 4 3 7 7 C 1.34773 * 120.00117 * 179.97438 * 6 5 4 8 8 O 1.21346 * 120.00371 * 0.02562 * 7 6 5 9 9 C 1.49453 * 119.99778 * 180.02562 * 7 6 5 10 10 O 1.21355 * 120.00100 * 353.74098 * 9 7 6 11 11 N 1.34778 * 120.00103 * 173.74473 * 9 7 6 12 12 C 1.47245 * 121.35545 * 172.88703 * 11 9 7 13 13 C 1.52795 * 107.83595 * 115.89835 * 12 11 9 14 14 C 1.50570 * 110.84113 * 47.34794 * 13 12 11 15 15 C 1.41481 * 117.58458 * 160.32824 * 14 13 12 16 16 C 1.41402 * 119.97786 * 359.01236 * 15 14 13 17 17 H 1.07997 * 119.99728 * 27.04241 * 16 15 14 18 18 C 1.39941 * 119.99676 * 207.04316 * 16 15 14 19 19 N 1.30821 * 120.00671 * 13.20449 * 18 16 15 20 20 Si 1.86800 * 119.99646 * 193.20352 * 18 16 15 21 21 H 1.48499 * 109.47161 * 59.99902 * 20 18 16 22 22 H 1.48496 * 109.47389 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47284 * 299.99989 * 20 18 16 24 24 C 1.40404 * 120.05916 * 179.05277 * 15 14 13 25 25 C 1.37650 * 119.53803 * 0.26553 * 24 15 14 26 26 C 1.38327 * 119.98568 * 0.17645 * 25 24 15 27 27 C 1.36995 * 123.05514 * 340.10932 * 14 13 12 28 28 C 1.46662 * 121.35421 * 352.91594 * 11 9 7 29 29 H 1.08998 * 109.47476 * 59.99893 * 1 2 3 30 30 H 1.09001 * 109.46705 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46849 * 299.99771 * 1 2 3 32 32 H 1.08996 * 109.47015 * 240.00236 * 2 1 3 33 33 H 1.09002 * 109.47381 * 119.99621 * 2 1 3 34 34 H 1.00906 * 111.00107 * 303.95247 * 3 2 1 35 35 H 1.09003 * 109.46488 * 59.99797 * 4 3 2 36 36 H 1.09002 * 109.47015 * 300.00353 * 4 3 2 37 37 H 1.08997 * 109.46955 * 59.99839 * 5 4 3 38 38 H 1.09002 * 109.47327 * 300.00223 * 5 4 3 39 39 H 0.97002 * 119.99475 * 0.02562 * 6 5 4 40 40 H 1.09002 * 109.78843 * 356.31322 * 12 11 9 41 41 H 1.09000 * 109.83759 * 235.50577 * 12 11 9 42 42 H 1.08996 * 109.19628 * 167.68897 * 13 12 11 43 43 H 1.09000 * 109.19513 * 287.01866 * 13 12 11 44 44 H 0.96998 * 120.00354 * 179.97438 * 19 18 16 45 45 H 1.07999 * 120.23307 * 180.29185 * 24 15 14 46 46 H 1.08000 * 120.00078 * 180.14849 * 25 24 15 47 47 H 1.08007 * 119.47133 * 179.87166 * 26 25 24 48 48 H 1.09008 * 109.43159 * 344.33226 * 28 11 9 49 49 H 1.08996 * 109.43291 * 104.18496 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4243 0.0006 5 6 3.9594 2.8799 0.0000 6 7 5.4239 2.9191 -0.0001 7 6 6.0663 4.1039 -0.0011 8 8 5.4317 5.1382 -0.0016 9 6 7.5603 4.1438 -0.0017 10 8 8.1948 3.1158 0.1134 11 7 8.2029 5.3215 -0.1299 12 6 9.6646 5.4171 0.0199 13 6 10.2453 5.8534 -1.3243 14 6 9.4776 7.0205 -1.8861 15 6 10.1129 7.8073 -2.8756 16 6 11.4299 7.4975 -3.2866 17 1 11.7940 6.4834 -3.2132 18 6 12.2615 8.5050 -3.7884 19 7 11.9284 9.7616 -3.6419 20 14 13.8472 8.0555 -4.6676 21 1 13.5349 7.2226 -5.8567 22 1 14.5422 9.2947 -5.0993 23 1 14.7253 7.2919 -3.7451 24 6 9.4371 8.8961 -3.4492 25 6 8.1576 9.1937 -3.0380 26 6 7.5481 8.4242 -2.0634 27 6 8.2074 7.3417 -1.4858 28 6 7.4747 6.5602 -0.4238 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6441 1.9013 -0.7814 35 1 3.8654 0.9202 -0.8892 36 1 3.8647 0.9205 0.8908 37 1 3.5821 3.3843 0.8894 38 1 3.5829 3.3833 -0.8905 39 1 5.9311 2.0923 0.0000 40 1 10.0712 4.4452 0.2996 41 1 9.9107 6.1538 0.7846 42 1 11.2874 6.1422 -1.1878 43 1 10.1933 5.0198 -2.0247 44 1 12.5050 10.4599 -3.9894 45 1 9.9176 9.4958 -4.2081 46 1 7.6299 10.0281 -3.4760 47 1 6.5447 8.6664 -1.7455 48 1 6.4733 6.3166 -0.7790 49 1 7.4009 7.1612 0.4825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329457828.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:31 Heat of formation + Delta-G solvation = -43.207641 kcal Electronic energy + Delta-G solvation = -29615.872454 eV Core-core repulsion = 25542.463529 eV Total energy + Delta-G solvation = -4073.408925 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -40.76997 -38.92447 -37.94180 -37.36216 -35.83529 -34.79181 -33.66515 -31.95098 -31.49137 -30.13797 -28.94451 -27.97823 -25.63615 -25.08632 -24.05914 -22.78228 -22.57968 -21.91007 -20.64375 -20.22078 -18.88422 -17.43418 -17.01178 -16.79846 -16.66484 -16.03794 -15.92145 -15.34745 -15.11660 -14.95264 -14.78668 -14.45621 -14.28557 -14.11259 -13.92471 -13.44245 -13.31016 -13.00272 -12.62959 -12.60913 -12.50290 -12.34387 -11.93643 -11.84195 -11.80630 -11.61699 -11.53336 -11.48580 -11.25479 -11.18346 -10.93132 -10.84612 -10.49887 -10.16809 -9.80871 -9.43048 -9.30573 -9.23190 -9.08336 -8.97725 -8.38914 -7.29984 -7.22936 -6.73933 -4.39292 1.51454 2.32996 2.76827 2.89861 3.05211 3.07884 3.19472 3.30323 3.45010 3.90437 3.91643 4.36896 4.46704 4.60210 4.62790 4.69829 4.82276 5.02529 5.06611 5.33885 5.45390 5.49507 5.50423 5.52474 5.55408 5.67581 5.73901 5.78589 5.88494 5.91203 6.03857 6.21726 6.34505 6.42570 6.43235 6.46227 6.66321 6.74837 6.83966 6.87257 7.00777 7.06894 7.20120 7.34061 7.50412 7.59834 7.76406 7.87811 8.02658 8.05516 8.10994 8.25160 8.61107 8.86723 8.94775 10.19115 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019614 B = 0.002060 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.231646 B =13587.628880 C =14050.951499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 N -0.688 5.688 4 C 0.047 3.953 5 C 0.119 3.881 6 N -0.705 5.705 7 C 0.511 3.489 8 O -0.506 6.506 9 C 0.507 3.493 10 O -0.537 6.537 11 N -0.567 5.567 12 C 0.110 3.890 13 C -0.067 4.067 14 C -0.178 4.178 15 C 0.111 3.889 16 C -0.460 4.460 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.797 5.797 20 Si 0.908 3.092 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.265 1.265 24 C -0.162 4.162 25 C -0.104 4.104 26 C -0.230 4.230 27 C -0.078 4.078 28 C 0.132 3.868 29 H 0.054 0.946 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.345 0.655 35 H 0.040 0.960 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.412 0.588 40 H 0.088 0.912 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.056 0.944 44 H 0.280 0.720 45 H 0.120 0.880 46 H 0.089 0.911 47 H 0.089 0.911 48 H 0.124 0.876 49 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.843 -14.015 5.970 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 N -0.320 5.320 4 C -0.083 4.083 5 C -0.005 4.005 6 N -0.359 5.359 7 C 0.292 3.708 8 O -0.382 6.382 9 C 0.289 3.711 10 O -0.415 6.415 11 N -0.298 5.298 12 C -0.012 4.012 13 C -0.105 4.105 14 C -0.180 4.180 15 C 0.109 3.891 16 C -0.490 4.490 17 H 0.096 0.904 18 C -0.142 4.142 19 N -0.422 5.422 20 Si 0.732 3.268 21 H -0.189 1.189 22 H -0.204 1.204 23 H -0.190 1.190 24 C -0.181 4.181 25 C -0.123 4.123 26 C -0.250 4.250 27 C -0.079 4.079 28 C 0.011 3.989 29 H 0.073 0.927 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.092 0.908 34 H 0.163 0.837 35 H 0.058 0.942 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.090 0.910 39 H 0.248 0.752 40 H 0.106 0.894 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.137 0.863 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.141 0.859 49 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -13.925 -13.498 6.677 20.510 hybrid contribution 1.201 -0.508 -1.391 1.907 sum -12.724 -14.006 5.286 19.647 Atomic orbital electron populations 1.21776 0.94636 1.01905 1.02624 1.21936 0.95949 0.88849 1.00756 1.60361 1.06887 1.14249 1.50499 1.22096 0.88605 0.95859 1.01734 1.21330 0.78793 0.96701 1.03657 1.45623 1.07417 1.08872 1.73983 1.20269 0.89029 0.83989 0.77489 1.90640 1.68284 1.31909 1.47332 1.19821 0.87925 0.84143 0.79220 1.90715 1.67889 1.32350 1.50586 1.47998 1.08891 1.07624 1.65304 1.21903 0.77793 1.02256 0.99224 1.20415 0.99785 0.96419 0.93850 1.19240 0.94979 1.01508 1.02236 1.17604 0.92387 0.90600 0.88557 1.19540 0.96818 0.95766 1.36894 0.90375 1.25888 0.99882 0.94476 0.93970 1.69797 1.37070 1.00325 1.35051 0.86373 0.81079 0.78804 0.80500 1.18937 1.20393 1.19012 1.21293 0.93270 1.01063 1.02514 1.20611 0.95771 0.98173 0.97726 1.20186 0.99577 1.00424 1.04812 1.19172 0.94290 0.96758 0.97648 1.21310 0.97033 0.82973 0.97592 0.92687 0.92036 0.91656 0.95102 0.90817 0.83723 0.94213 0.90014 0.89903 0.90954 0.75232 0.89371 0.90635 0.89827 0.92561 0.90902 0.86260 0.89302 0.89281 0.85898 0.91217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 10.17 37.16 0.38 -0.37 16 2 C 0.05 0.31 6.41 -3.82 -0.02 0.28 16 3 N -0.69 -4.60 6.50 -113.78 -0.74 -5.34 16 4 C 0.05 0.32 5.80 -3.82 -0.02 0.30 16 5 C 0.12 1.06 5.93 -4.05 -0.02 1.04 16 6 N -0.70 -7.73 5.55 -60.73 -0.34 -8.06 16 7 C 0.51 7.51 7.74 -11.59 -0.09 7.42 16 8 O -0.51 -8.36 13.27 5.50 0.07 -8.28 16 9 C 0.51 8.47 7.77 -11.58 -0.09 8.38 16 10 O -0.54 -9.45 16.01 5.49 0.09 -9.36 16 11 N -0.57 -10.08 2.93 -174.87 -0.51 -10.60 16 12 C 0.11 1.91 6.43 -3.74 -0.02 1.88 16 13 C -0.07 -1.36 4.94 -28.05 -0.14 -1.50 16 14 C -0.18 -4.16 5.82 -103.90 -0.60 -4.77 16 15 C 0.11 2.86 5.58 -106.64 -0.59 2.27 16 16 C -0.46 -11.74 8.01 -37.74 -0.30 -12.04 16 17 H 0.08 1.91 6.88 -52.49 -0.36 1.55 16 18 C 0.08 1.84 5.21 -17.34 -0.09 1.75 16 19 N -0.80 -20.23 10.84 55.55 0.60 -19.63 16 20 Si 0.91 18.41 29.58 -169.99 -5.03 13.38 16 21 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 22 H -0.28 -5.54 7.11 56.52 0.40 -5.14 16 23 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 24 C -0.16 -4.16 8.65 -38.98 -0.34 -4.50 16 25 C -0.10 -2.43 10.03 -39.76 -0.40 -2.83 16 26 C -0.23 -5.11 9.62 -39.16 -0.38 -5.49 16 27 C -0.08 -1.71 5.81 -104.61 -0.61 -2.32 16 28 C 0.13 2.46 5.56 -5.03 -0.03 2.43 16 29 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.03 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.34 2.05 8.73 -39.29 -0.34 1.71 16 35 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 36 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 39 H 0.41 3.96 7.96 -40.82 -0.32 3.64 16 40 H 0.09 1.43 7.11 -51.93 -0.37 1.06 16 41 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.08 1.69 7.06 -51.93 -0.37 1.33 16 43 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 44 H 0.28 6.53 8.30 -40.82 -0.34 6.19 16 45 H 0.12 3.17 6.16 -52.49 -0.32 2.85 16 46 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 47 H 0.09 1.78 8.05 -52.48 -0.42 1.35 16 48 H 0.12 2.29 4.80 -52.59 -0.25 2.04 16 49 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -28.89 396.31 -10.65 -39.54 By element: Atomic # 1 Polarization: 17.82 SS G_CDS: -7.39 Total: 10.43 kcal Atomic # 6 Polarization: -4.67 SS G_CDS: -3.38 Total: -8.05 kcal Atomic # 7 Polarization: -42.64 SS G_CDS: -0.99 Total: -43.63 kcal Atomic # 8 Polarization: -17.81 SS G_CDS: 0.16 Total: -17.65 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.03 Total: 13.38 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -28.89 -10.65 -39.54 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329457828.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.666 kcal (2) G-P(sol) polarization free energy of solvation -28.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds