Wall clock time and date at job start Wed Apr 1 2020 04:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.46742 * 2 1 4 4 C 1.46906 * 111.00129 * 179.97438 * 3 2 1 5 5 C 1.52993 * 109.47496 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47531 * 180.02562 * 5 4 3 7 7 C 1.34773 * 120.00117 * 179.97438 * 6 5 4 8 8 O 1.21346 * 120.00371 * 0.02562 * 7 6 5 9 9 C 1.49453 * 119.99778 * 180.02562 * 7 6 5 10 10 O 1.21355 * 120.00100 * 353.74098 * 9 7 6 11 11 N 1.34778 * 120.00103 * 173.74473 * 9 7 6 12 12 C 1.47245 * 121.35545 * 172.88703 * 11 9 7 13 13 C 1.52795 * 107.83595 * 115.89835 * 12 11 9 14 14 C 1.50570 * 110.84113 * 47.34794 * 13 12 11 15 15 C 1.41481 * 117.58458 * 160.32824 * 14 13 12 16 16 C 1.41402 * 119.97786 * 359.01236 * 15 14 13 17 17 H 1.07997 * 119.99728 * 27.04241 * 16 15 14 18 18 C 1.39941 * 119.99676 * 207.04316 * 16 15 14 19 19 N 1.30821 * 120.00671 * 13.20449 * 18 16 15 20 20 Si 1.86800 * 119.99646 * 193.20352 * 18 16 15 21 21 H 1.48499 * 109.47161 * 59.99902 * 20 18 16 22 22 H 1.48496 * 109.47389 * 180.02562 * 20 18 16 23 23 H 1.48500 * 109.47284 * 299.99989 * 20 18 16 24 24 C 1.40404 * 120.05916 * 179.05277 * 15 14 13 25 25 C 1.37650 * 119.53803 * 0.26553 * 24 15 14 26 26 C 1.38327 * 119.98568 * 0.17645 * 25 24 15 27 27 C 1.36995 * 123.05514 * 340.10932 * 14 13 12 28 28 C 1.46662 * 121.35421 * 352.91594 * 11 9 7 29 29 H 1.08998 * 109.47476 * 59.99893 * 1 2 3 30 30 H 1.09001 * 109.46705 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46849 * 299.99771 * 1 2 3 32 32 H 1.08996 * 109.47015 * 240.00236 * 2 1 3 33 33 H 1.09002 * 109.47381 * 119.99621 * 2 1 3 34 34 H 1.00906 * 111.00107 * 303.95247 * 3 2 1 35 35 H 1.09003 * 109.46488 * 59.99797 * 4 3 2 36 36 H 1.09002 * 109.47015 * 300.00353 * 4 3 2 37 37 H 1.08997 * 109.46955 * 59.99839 * 5 4 3 38 38 H 1.09002 * 109.47327 * 300.00223 * 5 4 3 39 39 H 0.97002 * 119.99475 * 0.02562 * 6 5 4 40 40 H 1.09002 * 109.78843 * 356.31322 * 12 11 9 41 41 H 1.09000 * 109.83759 * 235.50577 * 12 11 9 42 42 H 1.08996 * 109.19628 * 167.68897 * 13 12 11 43 43 H 1.09000 * 109.19513 * 287.01866 * 13 12 11 44 44 H 0.96998 * 120.00354 * 179.97438 * 19 18 16 45 45 H 1.07999 * 120.23307 * 180.29185 * 24 15 14 46 46 H 1.08000 * 120.00078 * 180.14849 * 25 24 15 47 47 H 1.08007 * 119.47133 * 179.87166 * 26 25 24 48 48 H 1.09008 * 109.43159 * 344.33226 * 28 11 9 49 49 H 1.08996 * 109.43291 * 104.18496 * 28 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4881 1.4243 0.0006 5 6 3.9594 2.8799 0.0000 6 7 5.4239 2.9191 -0.0001 7 6 6.0663 4.1039 -0.0011 8 8 5.4317 5.1382 -0.0016 9 6 7.5603 4.1438 -0.0017 10 8 8.1948 3.1158 0.1134 11 7 8.2029 5.3215 -0.1299 12 6 9.6646 5.4171 0.0199 13 6 10.2453 5.8534 -1.3243 14 6 9.4776 7.0205 -1.8861 15 6 10.1129 7.8073 -2.8756 16 6 11.4299 7.4975 -3.2866 17 1 11.7940 6.4834 -3.2132 18 6 12.2615 8.5050 -3.7884 19 7 11.9284 9.7616 -3.6419 20 14 13.8472 8.0555 -4.6676 21 1 13.5349 7.2226 -5.8567 22 1 14.5422 9.2947 -5.0993 23 1 14.7253 7.2919 -3.7451 24 6 9.4371 8.8961 -3.4492 25 6 8.1576 9.1937 -3.0380 26 6 7.5481 8.4242 -2.0634 27 6 8.2074 7.3417 -1.4858 28 6 7.4747 6.5602 -0.4238 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8901 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 1.6441 1.9013 -0.7814 35 1 3.8654 0.9202 -0.8892 36 1 3.8647 0.9205 0.8908 37 1 3.5821 3.3843 0.8894 38 1 3.5829 3.3833 -0.8905 39 1 5.9311 2.0923 0.0000 40 1 10.0712 4.4452 0.2996 41 1 9.9107 6.1538 0.7846 42 1 11.2874 6.1422 -1.1878 43 1 10.1933 5.0198 -2.0247 44 1 12.5050 10.4599 -3.9894 45 1 9.9176 9.4958 -4.2081 46 1 7.6299 10.0281 -3.4760 47 1 6.5447 8.6664 -1.7455 48 1 6.4733 6.3166 -0.7790 49 1 7.4009 7.1612 0.4825 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329457828.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:30:29 Heat of formation + Delta-G solvation = -61.641269 kcal Electronic energy + Delta-G solvation = -29616.671796 eV Core-core repulsion = 25542.463529 eV Total energy + Delta-G solvation = -4074.208267 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.04227 -40.32654 -39.41714 -38.04581 -37.25789 -35.77803 -35.45253 -33.58205 -32.10305 -31.84568 -30.61334 -28.76107 -27.18060 -26.76139 -25.44167 -23.97768 -23.10117 -22.82445 -22.39669 -21.61637 -20.30246 -19.02367 -18.48883 -18.10291 -17.48023 -17.26870 -17.03314 -16.79601 -16.43738 -16.10743 -15.85275 -15.64144 -15.36248 -15.24346 -15.12940 -14.79356 -14.59046 -14.46684 -14.15503 -14.12654 -13.51613 -13.28364 -13.23481 -13.08762 -12.89789 -12.84414 -12.78787 -12.58329 -12.43485 -12.41541 -12.37742 -12.14495 -11.98348 -11.86645 -11.51466 -11.07445 -11.02988 -10.52196 -10.32491 -9.84683 -9.46814 -9.16183 -9.02992 -8.57019 -6.31576 0.27967 0.98796 1.05973 1.20320 1.38785 1.49031 1.53609 2.05453 2.21249 2.34788 2.76029 3.12255 3.41347 3.67797 3.82115 3.96563 4.04312 4.12676 4.23419 4.25538 4.37526 4.41142 4.45605 4.51743 4.59829 4.64171 4.64982 4.75700 4.82460 4.85690 4.87166 4.99581 5.01928 5.11105 5.12492 5.16015 5.24224 5.29066 5.34931 5.35151 5.53310 5.78159 5.89196 5.95646 6.02352 6.15558 6.18344 6.23862 6.37500 6.41571 6.61106 6.73206 6.86745 6.97887 7.07738 8.37840 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.019614 B = 0.002060 C = 0.001992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.231646 B =13587.628880 C =14050.951499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.054 3.946 3 N -0.697 5.697 4 C 0.056 3.944 5 C 0.121 3.879 6 N -0.685 5.685 7 C 0.512 3.488 8 O -0.526 6.526 9 C 0.507 3.493 10 O -0.546 6.546 11 N -0.575 5.575 12 C 0.116 3.884 13 C -0.061 4.061 14 C -0.191 4.191 15 C 0.079 3.921 16 C -0.488 4.488 17 H 0.079 0.921 18 C 0.034 3.966 19 N -0.829 5.829 20 Si 0.978 3.022 21 H -0.264 1.264 22 H -0.271 1.271 23 H -0.258 1.258 24 C -0.192 4.192 25 C -0.111 4.111 26 C -0.230 4.230 27 C -0.083 4.083 28 C 0.143 3.857 29 H 0.056 0.944 30 H 0.070 0.930 31 H 0.057 0.943 32 H 0.035 0.965 33 H 0.073 0.927 34 H 0.348 0.652 35 H 0.047 0.953 36 H 0.086 0.914 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.420 0.580 40 H 0.102 0.898 41 H 0.087 0.913 42 H 0.077 0.923 43 H 0.048 0.952 44 H 0.285 0.715 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.116 0.884 48 H 0.129 0.871 49 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.773 -15.680 6.745 22.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.075 4.075 3 N -0.329 5.329 4 C -0.074 4.074 5 C -0.002 4.002 6 N -0.339 5.339 7 C 0.293 3.707 8 O -0.404 6.404 9 C 0.290 3.710 10 O -0.424 6.424 11 N -0.306 5.306 12 C -0.005 4.005 13 C -0.098 4.098 14 C -0.192 4.192 15 C 0.077 3.923 16 C -0.518 4.518 17 H 0.097 0.903 18 C -0.180 4.180 19 N -0.456 5.456 20 Si 0.799 3.201 21 H -0.189 1.189 22 H -0.195 1.195 23 H -0.182 1.182 24 C -0.212 4.212 25 C -0.129 4.129 26 C -0.250 4.250 27 C -0.083 4.083 28 C 0.022 3.978 29 H 0.075 0.925 30 H 0.089 0.911 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.092 0.908 34 H 0.167 0.833 35 H 0.065 0.935 36 H 0.105 0.895 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.258 0.742 40 H 0.120 0.880 41 H 0.106 0.894 42 H 0.095 0.905 43 H 0.067 0.933 44 H 0.096 0.904 45 H 0.118 0.882 46 H 0.127 0.873 47 H 0.134 0.866 48 H 0.146 0.854 49 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -14.881 -15.207 7.463 22.548 hybrid contribution 1.351 -0.042 -1.593 2.089 sum -13.530 -15.249 5.870 21.214 Atomic orbital electron populations 1.21754 0.94143 1.02452 1.02317 1.21969 0.96355 0.88264 1.00940 1.60368 1.06687 1.14993 1.50886 1.21997 0.88846 0.94226 1.02348 1.21425 0.77176 0.98254 1.03324 1.45586 1.08384 1.08066 1.71865 1.19924 0.88004 0.84772 0.78016 1.90623 1.68136 1.32720 1.48926 1.20188 0.88943 0.83524 0.78383 1.90708 1.68465 1.32484 1.50786 1.48019 1.08910 1.07793 1.65880 1.21843 0.77843 1.03237 0.97622 1.20331 0.99308 0.94983 0.95223 1.19633 0.95838 1.02011 1.01750 1.18007 0.93161 0.91502 0.89665 1.19756 0.97364 0.96162 1.38488 0.90318 1.26701 1.03049 0.94127 0.94136 1.69872 1.38514 1.01273 1.35893 0.85313 0.76975 0.78673 0.79134 1.18851 1.19546 1.18237 1.21264 0.94572 1.01937 1.03383 1.20875 0.95139 0.98915 0.97992 1.20548 1.00626 0.99918 1.03906 1.19599 0.93943 0.96820 0.97987 1.21221 0.96561 0.83106 0.96958 0.92525 0.91096 0.92397 0.94682 0.90822 0.83323 0.93462 0.89524 0.90443 0.91036 0.74245 0.88017 0.89442 0.90464 0.93312 0.90430 0.88204 0.87330 0.86600 0.85370 0.89836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 10.17 71.98 0.73 -0.50 16 2 C 0.05 0.51 6.41 86.30 0.55 1.06 16 3 N -0.70 -7.99 6.50 -513.88 -3.34 -11.33 16 4 C 0.06 0.63 5.80 86.30 0.50 1.13 16 5 C 0.12 1.92 5.93 86.38 0.51 2.44 16 6 N -0.69 -13.54 5.55 -464.43 -2.58 -16.12 16 7 C 0.51 14.06 7.74 87.27 0.68 14.74 16 8 O -0.53 -16.37 13.27 -3.23 -0.04 -16.41 16 9 C 0.51 16.00 7.77 87.27 0.68 16.68 16 10 O -0.55 -18.14 16.01 -3.26 -0.05 -18.19 16 11 N -0.57 -19.50 2.93 -825.51 -2.42 -21.92 16 12 C 0.12 3.88 6.43 86.17 0.55 4.44 16 13 C -0.06 -2.46 4.94 29.74 0.15 -2.31 16 14 C -0.19 -9.01 5.82 -19.40 -0.11 -9.12 16 15 C 0.08 4.20 5.58 -21.17 -0.12 4.08 16 16 C -0.49 -25.67 8.01 23.46 0.19 -25.48 16 17 H 0.08 3.96 6.88 -2.91 -0.02 3.94 16 18 C 0.03 1.70 5.21 85.26 0.44 2.14 16 19 N -0.83 -43.43 10.84 21.82 0.24 -43.19 16 20 Si 0.98 38.24 29.58 68.60 2.03 40.27 16 21 H -0.26 -10.19 7.11 99.48 0.71 -9.49 16 22 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 23 H -0.26 -9.71 7.11 99.48 0.71 -9.00 16 24 C -0.19 -10.21 8.65 22.66 0.20 -10.01 16 25 C -0.11 -5.21 10.03 22.15 0.22 -4.99 16 26 C -0.23 -10.01 9.62 22.55 0.22 -9.80 16 27 C -0.08 -3.58 5.81 -19.85 -0.12 -3.69 16 28 C 0.14 5.07 5.56 85.65 0.48 5.54 16 29 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 31 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 32 H 0.03 0.31 8.14 -2.39 -0.02 0.29 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.35 3.53 8.73 -89.69 -0.78 2.75 16 35 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 36 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.42 7.06 7.96 -92.71 -0.74 6.32 16 40 H 0.10 3.13 7.11 -2.39 -0.02 3.12 16 41 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 42 H 0.08 3.19 7.06 -2.39 -0.02 3.17 16 43 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 44 H 0.29 13.65 8.30 -92.71 -0.77 12.88 16 45 H 0.10 5.59 6.16 -2.91 -0.02 5.57 16 46 H 0.11 4.52 8.06 -2.91 -0.02 4.50 16 47 H 0.12 4.36 8.05 -2.91 -0.02 4.33 16 48 H 0.13 4.53 4.80 -12.97 -0.06 4.47 16 49 H 0.08 2.76 8.14 -2.39 -0.02 2.74 16 Total: -1.00 -62.70 396.31 -1.00 -63.70 By element: Atomic # 1 Polarization: 37.44 SS G_CDS: -0.58 Total: 36.86 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 5.75 Total: -13.65 kcal Atomic # 7 Polarization: -84.46 SS G_CDS: -8.10 Total: -92.56 kcal Atomic # 8 Polarization: -34.51 SS G_CDS: -0.10 Total: -34.61 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 2.03 Total: 40.27 kcal Total: -62.70 -1.00 -63.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329457828.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.060 kcal (2) G-P(sol) polarization free energy of solvation -62.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds