Wall clock time and date at job start Wed Apr 1 2020 05:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47582 * 2 1 4 4 C 1.36909 * 119.99811 * 77.51962 * 3 2 1 5 5 H 1.08003 * 119.99766 * 165.94891 * 4 3 2 6 6 C 1.39014 * 120.00367 * 345.94617 * 4 3 2 7 7 N 1.31386 * 120.00014 * 24.13995 * 6 4 3 8 8 Si 1.86799 * 120.00120 * 204.14254 * 6 4 3 9 9 H 1.48504 * 109.47276 * 59.99725 * 8 6 4 10 10 H 1.48497 * 109.47263 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47059 * 299.99938 * 8 6 4 12 12 C 1.34776 * 120.00053 * 257.52302 * 3 2 1 13 13 O 1.21636 * 120.00057 * 183.33442 * 12 3 2 14 14 C 1.47419 * 119.99832 * 3.34119 * 12 3 2 15 15 C 1.39855 * 120.07601 * 35.45981 * 14 12 3 16 16 C 1.37120 * 119.92065 * 179.71950 * 15 14 12 17 17 C 1.39232 * 120.07794 * 0.56025 * 16 15 14 18 18 N 1.39054 * 119.92710 * 179.69795 * 17 16 15 19 19 C 1.46846 * 110.99897 * 236.06322 * 18 17 16 20 20 C 1.53035 * 109.52378 * 185.83527 * 19 18 17 21 21 C 1.53118 * 109.27986 * 300.82331 * 20 19 18 22 22 C 1.53114 * 109.16101 * 57.65342 * 21 20 19 23 23 H 1.09002 * 109.50445 * 62.32562 * 22 21 20 24 24 C 1.50704 * 109.50370 * 182.40449 * 22 21 20 25 25 N 1.34775 * 119.99705 * 300.00053 * 24 22 21 26 26 O 1.21278 * 119.99844 * 120.00056 * 24 22 21 27 27 C 1.46842 * 110.99952 * 0.27156 * 18 17 16 28 28 C 1.39235 * 120.14579 * 359.71350 * 17 16 15 29 29 C 1.37112 * 120.07758 * 0.02562 * 28 17 16 30 30 H 1.09002 * 109.47408 * 277.40460 * 1 2 3 31 31 H 1.09000 * 109.46722 * 37.40019 * 1 2 3 32 32 H 1.08997 * 109.47504 * 157.39358 * 1 2 3 33 33 H 1.09000 * 109.47392 * 239.99447 * 2 1 3 34 34 H 1.09002 * 109.46623 * 120.00059 * 2 1 3 35 35 H 0.97000 * 119.99893 * 180.02562 * 7 6 4 36 36 H 1.08001 * 120.03688 * 359.97438 * 15 14 12 37 37 H 1.08000 * 119.95965 * 180.26820 * 16 15 14 38 38 H 1.08999 * 109.46364 * 305.85944 * 19 18 17 39 39 H 1.09009 * 109.46064 * 65.83145 * 19 18 17 40 40 H 1.09004 * 109.49771 * 60.76309 * 20 19 18 41 41 H 1.08999 * 109.50446 * 180.87609 * 20 19 18 42 42 H 1.09006 * 109.51796 * 177.55833 * 21 20 19 43 43 H 1.08999 * 109.51944 * 297.74357 * 21 20 19 44 44 H 0.97001 * 120.00178 * 359.97438 * 25 24 22 45 45 H 0.96998 * 119.99795 * 179.97438 * 25 24 22 46 46 H 1.08997 * 109.46354 * 294.18033 * 27 18 17 47 47 H 1.09003 * 109.46072 * 54.14455 * 27 18 17 48 48 H 1.08004 * 119.95711 * 179.97438 * 28 17 16 49 49 H 1.07998 * 120.04073 * 179.97438 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0051 2.1119 1.1577 5 1 2.5633 3.0344 1.2204 6 6 1.2730 1.6667 2.2524 7 7 0.9945 0.3891 2.3807 8 14 0.6854 2.8847 3.5409 9 1 -0.2001 3.8918 2.9028 10 1 -0.0679 2.1627 4.5975 11 1 1.8565 3.5683 4.1465 12 6 2.4809 1.9324 -1.1396 13 8 2.9425 3.0577 -1.1273 14 6 2.4270 1.1716 -2.4012 15 6 1.3526 0.3136 -2.6569 16 6 1.3029 -0.3882 -3.8339 17 6 2.3262 -0.2563 -4.7687 18 7 2.2757 -0.9742 -5.9585 19 6 3.4830 -1.7922 -6.1312 20 6 3.4602 -2.4526 -7.5115 21 6 2.2080 -3.3253 -7.6337 22 6 0.9670 -2.4590 -7.4019 23 1 0.9112 -1.6897 -8.1721 24 6 -0.2672 -3.3216 -7.4620 25 7 -0.5553 -4.0083 -8.5853 26 8 -1.0012 -3.3978 -6.4995 27 6 1.0621 -1.7983 -6.0247 28 6 3.4002 0.5927 -4.5147 29 6 3.4535 1.3014 -3.3422 30 1 -0.3634 0.1324 1.0191 31 1 -0.3633 0.8164 -0.6242 32 1 -0.3634 -0.9487 -0.3950 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 0.4833 0.0785 3.1444 36 1 0.5609 0.2071 -1.9300 37 1 0.4713 -1.0476 -4.0339 38 1 4.3660 -1.1588 -6.0461 39 1 3.5131 -2.5625 -5.3606 40 1 3.4440 -1.6828 -8.2830 41 1 4.3488 -3.0720 -7.6333 42 1 2.1654 -3.7635 -8.6310 43 1 2.2429 -4.1190 -6.8874 44 1 0.0316 -3.9471 -9.3552 45 1 -1.3495 -4.5639 -8.6239 46 1 1.1036 -2.5685 -5.2546 47 1 0.1868 -1.1694 -5.8624 48 1 4.1926 0.6923 -5.2418 49 1 4.2870 1.9594 -3.1456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001337922329.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:05 Heat of formation + Delta-G solvation = -8.451362 kcal Electronic energy + Delta-G solvation = -30767.787410 eV Core-core repulsion = 26695.885630 eV Total energy + Delta-G solvation = -4071.901780 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.84629 -39.67862 -38.68863 -36.95002 -35.20806 -34.39476 -33.44839 -32.00040 -31.63303 -30.44314 -29.46766 -28.91325 -25.52982 -24.90715 -24.41991 -22.35832 -22.02368 -21.59965 -20.89529 -19.98278 -19.18754 -18.07055 -17.25981 -16.95993 -16.67085 -16.30103 -15.47723 -15.31006 -14.96855 -14.88145 -14.62693 -14.29961 -14.12272 -13.99363 -13.80931 -13.49153 -13.43173 -13.10233 -12.92067 -12.70081 -12.44598 -12.12733 -11.84286 -11.77741 -11.47682 -11.36001 -11.23779 -11.15283 -10.96852 -10.87099 -10.84629 -10.45811 -10.35228 -10.18673 -10.13186 -10.05752 -9.95459 -9.35839 -8.78824 -8.52293 -8.39396 -7.67749 -7.52424 -6.32612 -3.78644 1.49852 1.85752 2.29631 3.04058 3.18403 3.25167 3.31153 3.63727 3.89021 4.11160 4.21716 4.34669 4.41783 4.49805 4.75740 4.82392 4.92870 5.00544 5.09839 5.14679 5.18562 5.28409 5.32233 5.39507 5.48620 5.56864 5.65119 5.69478 5.72158 5.84474 5.86277 5.92391 6.05784 6.21344 6.38997 6.44669 6.48665 6.55193 6.65910 6.69556 6.82149 6.91390 7.00639 7.04248 7.09767 7.37244 7.51373 7.57936 7.70576 7.90321 8.12887 8.52645 9.17200 9.43921 10.02229 10.58128 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.002581 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.365537 B =10843.906328 C =11934.546078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.104 3.896 3 N -0.430 5.430 4 C -0.301 4.301 5 H 0.105 0.895 6 C 0.032 3.968 7 N -0.859 5.859 8 Si 0.921 3.079 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.273 1.273 12 C 0.473 3.527 13 O -0.595 6.595 14 C -0.115 4.115 15 C -0.085 4.085 16 C -0.178 4.178 17 C 0.106 3.894 18 N -0.487 5.487 19 C 0.053 3.947 20 C -0.116 4.116 21 C -0.113 4.113 22 C -0.107 4.107 23 H 0.108 0.892 24 C 0.523 3.477 25 N -0.856 5.856 26 O -0.537 6.537 27 C 0.070 3.930 28 C -0.148 4.148 29 C -0.057 4.057 30 H 0.095 0.905 31 H 0.035 0.965 32 H 0.034 0.966 33 H 0.045 0.955 34 H 0.114 0.886 35 H 0.268 0.732 36 H 0.148 0.852 37 H 0.126 0.874 38 H 0.086 0.914 39 H 0.045 0.955 40 H 0.076 0.924 41 H 0.075 0.925 42 H 0.070 0.930 43 H 0.068 0.932 44 H 0.401 0.599 45 H 0.401 0.599 46 H 0.055 0.945 47 H 0.091 0.909 48 H 0.122 0.878 49 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.823 -12.721 -22.143 25.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.019 4.019 3 N -0.146 5.146 4 C -0.429 4.429 5 H 0.123 0.877 6 C -0.171 4.171 7 N -0.499 5.499 8 Si 0.748 3.252 9 H -0.199 1.199 10 H -0.210 1.210 11 H -0.198 1.198 12 C 0.263 3.737 13 O -0.482 6.482 14 C -0.120 4.120 15 C -0.104 4.104 16 C -0.198 4.198 17 C 0.009 3.991 18 N -0.202 5.202 19 C -0.073 4.073 20 C -0.154 4.154 21 C -0.151 4.151 22 C -0.129 4.129 23 H 0.126 0.874 24 C 0.307 3.693 25 N -0.420 5.420 26 O -0.413 6.413 27 C -0.057 4.057 28 C -0.168 4.168 29 C -0.077 4.077 30 H 0.114 0.886 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.063 0.937 34 H 0.131 0.869 35 H 0.079 0.921 36 H 0.165 0.835 37 H 0.144 0.856 38 H 0.104 0.896 39 H 0.063 0.937 40 H 0.094 0.906 41 H 0.094 0.906 42 H 0.089 0.911 43 H 0.087 0.913 44 H 0.229 0.771 45 H 0.232 0.768 46 H 0.074 0.926 47 H 0.110 0.890 48 H 0.140 0.860 49 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.586 -11.951 -21.645 24.732 hybrid contribution -0.532 -0.316 0.655 0.901 sum 0.054 -12.267 -20.990 24.312 Atomic orbital electron populations 1.22568 0.97134 0.98028 1.04372 1.21992 0.94372 0.83619 1.01885 1.43774 1.52305 1.11474 1.07078 1.19662 1.28108 1.05508 0.89596 0.87737 1.25242 0.96838 0.96242 0.98761 1.70015 1.37690 1.12603 1.29564 0.86074 0.79338 0.80564 0.79242 1.19885 1.20963 1.19779 1.17825 0.85590 0.87067 0.83182 1.90601 1.51650 1.19953 1.85995 1.20220 0.96051 0.98952 0.96729 1.21955 0.98413 0.93542 0.96516 1.21128 1.00673 1.03917 0.94118 1.18831 0.95840 0.96456 0.87996 1.58822 1.03218 1.25967 1.32230 1.22293 0.92239 0.95850 0.96905 1.21617 0.97341 0.98994 0.97438 1.21605 0.93403 0.97807 1.02238 1.21359 0.92765 0.97947 1.00811 0.87360 1.20584 0.86715 0.79586 0.82415 1.43868 1.30549 1.51056 1.16529 1.90788 1.50968 1.63812 1.35729 1.21993 0.92981 0.96065 0.94701 1.20443 0.98816 0.99418 0.98128 1.20906 0.97723 0.96890 0.92176 0.88640 0.94624 0.94703 0.93731 0.86855 0.92057 0.83481 0.85613 0.89592 0.93713 0.90568 0.90611 0.91121 0.91325 0.77082 0.76816 0.92642 0.89036 0.86038 0.85493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.51 7.87 37.16 0.29 -3.21 16 2 C 0.10 2.41 4.87 -4.04 -0.02 2.39 16 3 N -0.43 -11.30 2.64 -116.03 -0.31 -11.61 16 4 C -0.30 -8.41 9.36 -15.00 -0.14 -8.55 16 5 H 0.10 3.08 7.34 -52.48 -0.39 2.70 16 6 C 0.03 0.83 4.91 -17.45 -0.09 0.75 16 7 N -0.86 -21.59 7.65 55.50 0.42 -21.17 16 8 Si 0.92 20.59 29.62 -169.99 -5.03 15.56 16 9 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 10 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 11 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 12 C 0.47 12.35 7.31 -12.52 -0.09 12.25 16 13 O -0.60 -17.41 16.45 5.25 0.09 -17.32 16 14 C -0.12 -2.47 5.24 -104.95 -0.55 -3.02 16 15 C -0.09 -1.63 7.37 -39.38 -0.29 -1.92 16 16 C -0.18 -2.90 8.77 -39.62 -0.35 -3.25 16 17 C 0.11 1.58 5.64 -83.85 -0.47 1.11 16 18 N -0.49 -5.74 4.68 -171.14 -0.80 -6.54 16 19 C 0.05 0.49 5.25 -3.84 -0.02 0.47 16 20 C -0.12 -0.73 6.09 -26.65 -0.16 -0.89 16 21 C -0.11 -0.67 5.16 -26.61 -0.14 -0.80 16 22 C -0.11 -0.85 2.69 -91.69 -0.25 -1.10 16 23 H 0.11 0.75 8.14 -51.93 -0.42 0.32 16 24 C 0.52 4.76 7.43 -10.98 -0.08 4.67 16 25 N -0.86 -4.15 8.78 31.22 0.27 -3.88 16 26 O -0.54 -7.50 16.82 5.56 0.09 -7.41 16 27 C 0.07 0.79 2.71 -3.84 -0.01 0.78 16 28 C -0.15 -2.27 9.11 -39.62 -0.36 -2.63 16 29 C -0.06 -1.06 9.58 -39.38 -0.38 -1.44 16 30 H 0.10 2.22 5.46 -51.93 -0.28 1.94 16 31 H 0.03 0.77 7.05 -51.93 -0.37 0.41 16 32 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.04 0.95 4.96 -51.93 -0.26 0.69 16 34 H 0.11 2.83 6.07 -51.93 -0.32 2.51 16 35 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 36 H 0.15 2.88 3.30 -52.49 -0.17 2.71 16 37 H 0.13 1.88 5.77 -52.49 -0.30 1.58 16 38 H 0.09 0.78 6.69 -51.93 -0.35 0.44 16 39 H 0.04 0.45 8.14 -51.92 -0.42 0.03 16 40 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.07 0.24 7.65 -51.93 -0.40 -0.16 16 43 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.40 0.71 8.30 -40.82 -0.34 0.38 16 45 H 0.40 1.69 8.93 -40.82 -0.36 1.32 16 46 H 0.06 0.70 7.65 -51.93 -0.40 0.30 16 47 H 0.09 1.17 6.95 -51.93 -0.36 0.81 16 48 H 0.12 1.54 7.15 -52.48 -0.38 1.17 16 49 H 0.13 2.35 8.01 -52.49 -0.42 1.93 16 LS Contribution 375.74 15.07 5.66 5.66 Total: -1.00 -33.53 375.74 -9.46 -42.99 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -6.76 Total: 8.11 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -3.10 Total: -4.39 kcal Atomic # 7 Polarization: -42.78 SS G_CDS: -0.41 Total: -43.19 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.18 Total: -24.73 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.03 Total: 15.56 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.53 -9.46 -42.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337922329.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.534 kcal (2) G-P(sol) polarization free energy of solvation -33.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.985 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds