Wall clock time and date at job start Wed Apr 1 2020 05:06:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46496 * 109.47582 * 2 1 4 4 C 1.36909 * 119.99811 * 77.51962 * 3 2 1 5 5 H 1.08003 * 119.99766 * 165.94891 * 4 3 2 6 6 C 1.39014 * 120.00367 * 345.94617 * 4 3 2 7 7 N 1.31386 * 120.00014 * 24.13995 * 6 4 3 8 8 Si 1.86799 * 120.00120 * 204.14254 * 6 4 3 9 9 H 1.48504 * 109.47276 * 59.99725 * 8 6 4 10 10 H 1.48497 * 109.47263 * 179.97438 * 8 6 4 11 11 H 1.48508 * 109.47059 * 299.99938 * 8 6 4 12 12 C 1.34776 * 120.00053 * 257.52302 * 3 2 1 13 13 O 1.21636 * 120.00057 * 183.33442 * 12 3 2 14 14 C 1.47419 * 119.99832 * 3.34119 * 12 3 2 15 15 C 1.39855 * 120.07601 * 35.45981 * 14 12 3 16 16 C 1.37120 * 119.92065 * 179.71950 * 15 14 12 17 17 C 1.39232 * 120.07794 * 0.56025 * 16 15 14 18 18 N 1.39054 * 119.92710 * 179.69795 * 17 16 15 19 19 C 1.46846 * 110.99897 * 236.06322 * 18 17 16 20 20 C 1.53035 * 109.52378 * 185.83527 * 19 18 17 21 21 C 1.53118 * 109.27986 * 300.82331 * 20 19 18 22 22 C 1.53114 * 109.16101 * 57.65342 * 21 20 19 23 23 H 1.09002 * 109.50445 * 62.32562 * 22 21 20 24 24 C 1.50704 * 109.50370 * 182.40449 * 22 21 20 25 25 N 1.34775 * 119.99705 * 300.00053 * 24 22 21 26 26 O 1.21278 * 119.99844 * 120.00056 * 24 22 21 27 27 C 1.46842 * 110.99952 * 0.27156 * 18 17 16 28 28 C 1.39235 * 120.14579 * 359.71350 * 17 16 15 29 29 C 1.37112 * 120.07758 * 0.02562 * 28 17 16 30 30 H 1.09002 * 109.47408 * 277.40460 * 1 2 3 31 31 H 1.09000 * 109.46722 * 37.40019 * 1 2 3 32 32 H 1.08997 * 109.47504 * 157.39358 * 1 2 3 33 33 H 1.09000 * 109.47392 * 239.99447 * 2 1 3 34 34 H 1.09002 * 109.46623 * 120.00059 * 2 1 3 35 35 H 0.97000 * 119.99893 * 180.02562 * 7 6 4 36 36 H 1.08001 * 120.03688 * 359.97438 * 15 14 12 37 37 H 1.08000 * 119.95965 * 180.26820 * 16 15 14 38 38 H 1.08999 * 109.46364 * 305.85944 * 19 18 17 39 39 H 1.09009 * 109.46064 * 65.83145 * 19 18 17 40 40 H 1.09004 * 109.49771 * 60.76309 * 20 19 18 41 41 H 1.08999 * 109.50446 * 180.87609 * 20 19 18 42 42 H 1.09006 * 109.51796 * 177.55833 * 21 20 19 43 43 H 1.08999 * 109.51944 * 297.74357 * 21 20 19 44 44 H 0.97001 * 120.00178 * 359.97438 * 25 24 22 45 45 H 0.96998 * 119.99795 * 179.97438 * 25 24 22 46 46 H 1.08997 * 109.46354 * 294.18033 * 27 18 17 47 47 H 1.09003 * 109.46072 * 54.14455 * 27 18 17 48 48 H 1.08004 * 119.95711 * 179.97438 * 28 17 16 49 49 H 1.07998 * 120.04073 * 179.97438 * 29 28 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.0051 2.1119 1.1577 5 1 2.5633 3.0344 1.2204 6 6 1.2730 1.6667 2.2524 7 7 0.9945 0.3891 2.3807 8 14 0.6854 2.8847 3.5409 9 1 -0.2001 3.8918 2.9028 10 1 -0.0679 2.1627 4.5975 11 1 1.8565 3.5683 4.1465 12 6 2.4809 1.9324 -1.1396 13 8 2.9425 3.0577 -1.1273 14 6 2.4270 1.1716 -2.4012 15 6 1.3526 0.3136 -2.6569 16 6 1.3029 -0.3882 -3.8339 17 6 2.3262 -0.2563 -4.7687 18 7 2.2757 -0.9742 -5.9585 19 6 3.4830 -1.7922 -6.1312 20 6 3.4602 -2.4526 -7.5115 21 6 2.2080 -3.3253 -7.6337 22 6 0.9670 -2.4590 -7.4019 23 1 0.9112 -1.6897 -8.1721 24 6 -0.2672 -3.3216 -7.4620 25 7 -0.5553 -4.0083 -8.5853 26 8 -1.0012 -3.3978 -6.4995 27 6 1.0621 -1.7983 -6.0247 28 6 3.4002 0.5927 -4.5147 29 6 3.4535 1.3014 -3.3422 30 1 -0.3634 0.1324 1.0191 31 1 -0.3633 0.8164 -0.6242 32 1 -0.3634 -0.9487 -0.3950 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5139 0.8900 35 1 0.4833 0.0785 3.1444 36 1 0.5609 0.2071 -1.9300 37 1 0.4713 -1.0476 -4.0339 38 1 4.3660 -1.1588 -6.0461 39 1 3.5131 -2.5625 -5.3606 40 1 3.4440 -1.6828 -8.2830 41 1 4.3488 -3.0720 -7.6333 42 1 2.1654 -3.7635 -8.6310 43 1 2.2429 -4.1190 -6.8874 44 1 0.0316 -3.9471 -9.3552 45 1 -1.3495 -4.5639 -8.6239 46 1 1.1036 -2.5685 -5.2546 47 1 0.1868 -1.1694 -5.8624 48 1 4.1926 0.6923 -5.2418 49 1 4.2870 1.9594 -3.1456 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001337922329.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:03 Heat of formation + Delta-G solvation = -32.585766 kcal Electronic energy + Delta-G solvation = -30768.833957 eV Core-core repulsion = 26695.885630 eV Total energy + Delta-G solvation = -4072.948326 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -41.83578 -40.98249 -40.01571 -38.19016 -37.22084 -35.23921 -34.29241 -33.74814 -32.69773 -31.82099 -31.08511 -30.29816 -27.19598 -25.70750 -25.67598 -24.02956 -23.33919 -22.90896 -21.75907 -21.07892 -20.45432 -18.99530 -18.84869 -18.25027 -17.87854 -17.47058 -16.73069 -16.48970 -16.27892 -16.08737 -15.88243 -15.62675 -15.48710 -15.17837 -14.97731 -14.84936 -14.68115 -14.31724 -14.15762 -13.92791 -13.73055 -13.58421 -13.50414 -13.14090 -12.97056 -12.80707 -12.71500 -12.51056 -12.13544 -12.11818 -12.03609 -11.95073 -11.77218 -11.61570 -11.47012 -10.86895 -10.76404 -10.67232 -10.61498 -10.36864 -9.94883 -9.67742 -8.79672 -8.31836 -5.88470 0.05668 0.46596 1.36040 1.41465 1.50578 1.62934 2.01858 2.24232 2.35849 2.72554 2.97591 3.09204 3.11789 3.57080 3.72115 3.90302 3.91860 3.95694 4.00438 4.15414 4.25087 4.28536 4.33624 4.46250 4.52518 4.55894 4.60563 4.70152 4.76243 4.80858 4.81450 4.86361 4.93297 5.01613 5.08559 5.12279 5.13586 5.25798 5.32026 5.38982 5.40845 5.54093 5.61018 5.69222 5.84248 5.91518 5.99859 6.08277 6.26386 6.47740 6.51441 7.13039 7.36597 7.44025 8.02154 8.56792 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018197 B = 0.002581 C = 0.002346 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1538.365537 B =10843.906328 C =11934.546078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.111 3.889 3 N -0.439 5.439 4 C -0.352 4.352 5 H 0.073 0.927 6 C 0.011 3.989 7 N -0.858 5.858 8 Si 0.981 3.019 9 H -0.280 1.280 10 H -0.263 1.263 11 H -0.273 1.273 12 C 0.460 3.540 13 O -0.645 6.645 14 C -0.151 4.151 15 C -0.087 4.087 16 C -0.179 4.179 17 C 0.127 3.873 18 N -0.480 5.480 19 C 0.044 3.956 20 C -0.109 4.109 21 C -0.109 4.109 22 C -0.099 4.099 23 H 0.127 0.873 24 C 0.521 3.479 25 N -0.833 5.833 26 O -0.595 6.595 27 C 0.068 3.932 28 C -0.137 4.137 29 C -0.061 4.061 30 H 0.079 0.921 31 H 0.026 0.974 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.095 0.905 35 H 0.277 0.723 36 H 0.139 0.861 37 H 0.140 0.860 38 H 0.093 0.907 39 H 0.037 0.963 40 H 0.087 0.913 41 H 0.098 0.902 42 H 0.106 0.894 43 H 0.058 0.942 44 H 0.419 0.581 45 H 0.407 0.593 46 H 0.040 0.960 47 H 0.072 0.928 48 H 0.157 0.843 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.821 -15.137 -25.403 29.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.012 4.012 3 N -0.155 5.155 4 C -0.480 4.480 5 H 0.091 0.909 6 C -0.193 4.193 7 N -0.495 5.495 8 Si 0.804 3.196 9 H -0.206 1.206 10 H -0.187 1.187 11 H -0.198 1.198 12 C 0.251 3.749 13 O -0.535 6.535 14 C -0.156 4.156 15 C -0.106 4.106 16 C -0.200 4.200 17 C 0.028 3.972 18 N -0.194 5.194 19 C -0.080 4.080 20 C -0.146 4.146 21 C -0.147 4.147 22 C -0.120 4.120 23 H 0.145 0.855 24 C 0.305 3.695 25 N -0.397 5.397 26 O -0.476 6.476 27 C -0.060 4.060 28 C -0.157 4.157 29 C -0.081 4.081 30 H 0.097 0.903 31 H 0.045 0.955 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.111 0.889 39 H 0.056 0.944 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.125 0.875 43 H 0.077 0.923 44 H 0.251 0.749 45 H 0.238 0.762 46 H 0.059 0.941 47 H 0.091 0.909 48 H 0.175 0.825 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 0.591 -14.453 -24.972 28.858 hybrid contribution -0.527 0.303 1.487 1.606 sum 0.064 -14.150 -23.485 27.418 Atomic orbital electron populations 1.22394 0.95826 0.99413 1.03232 1.21985 0.95337 0.82112 1.01739 1.43957 1.52339 1.12385 1.06820 1.19522 1.31090 1.05857 0.91505 0.90947 1.25871 0.95738 0.97842 0.99803 1.70074 1.36380 1.13067 1.30015 0.85205 0.78638 0.78469 0.77250 1.20600 1.18689 1.19799 1.18621 0.84627 0.86985 0.84620 1.90527 1.53763 1.22162 1.87072 1.19938 0.98704 1.01242 0.95673 1.21818 0.97520 0.93667 0.97593 1.21256 1.01744 1.03582 0.93433 1.19065 0.94440 0.95466 0.88237 1.58856 1.04676 1.26450 1.29443 1.22520 0.90881 0.95591 0.99055 1.21625 0.98375 0.99370 0.95246 1.21652 0.91898 0.97091 1.04038 1.21312 0.93416 0.98410 0.98885 0.85546 1.20798 0.86493 0.79653 0.82511 1.43679 1.30704 1.49403 1.15874 1.90773 1.52834 1.65981 1.37989 1.21971 0.91856 0.95318 0.96824 1.20665 0.99647 0.98076 0.97276 1.20953 0.96939 0.97340 0.92885 0.90297 0.95495 0.91487 0.91979 0.88734 0.91167 0.84368 0.84265 0.88879 0.94433 0.89484 0.88371 0.87525 0.92281 0.74877 0.76153 0.94140 0.90944 0.82522 0.86159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.58 7.87 71.98 0.57 -6.01 16 2 C 0.11 5.28 4.87 86.38 0.42 5.71 16 3 N -0.44 -24.47 2.64 -639.26 -1.69 -26.16 16 4 C -0.35 -20.89 9.36 84.09 0.79 -20.10 16 5 H 0.07 4.64 7.34 -2.91 -0.02 4.62 16 6 C 0.01 0.60 4.91 84.95 0.42 1.01 16 7 N -0.86 -43.60 7.65 21.68 0.17 -43.44 16 8 Si 0.98 43.04 29.62 68.60 2.03 45.07 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 10 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 12 C 0.46 25.59 7.31 86.66 0.63 26.23 16 13 O -0.64 -40.60 16.45 -4.14 -0.07 -40.67 16 14 C -0.15 -6.77 5.24 -20.08 -0.11 -6.87 16 15 C -0.09 -3.39 7.37 22.40 0.17 -3.23 16 16 C -0.18 -5.77 8.77 22.25 0.19 -5.57 16 17 C 0.13 3.56 5.64 38.48 0.22 3.78 16 18 N -0.48 -9.99 4.68 -695.38 -3.26 -13.25 16 19 C 0.04 0.67 5.25 86.33 0.45 1.13 16 20 C -0.11 -0.84 6.09 30.65 0.19 -0.65 16 21 C -0.11 -0.80 5.16 30.67 0.16 -0.64 16 22 C -0.10 -1.25 2.69 -11.49 -0.03 -1.28 16 23 H 0.13 1.20 8.14 -2.39 -0.02 1.18 16 24 C 0.52 8.30 7.43 87.66 0.65 8.95 16 25 N -0.83 -5.36 8.78 -173.53 -1.52 -6.88 16 26 O -0.60 -16.26 16.82 -3.02 -0.05 -16.32 16 27 C 0.07 1.41 2.71 86.33 0.23 1.64 16 28 C -0.14 -3.96 9.11 22.24 0.20 -3.76 16 29 C -0.06 -2.32 9.58 22.40 0.21 -2.11 16 30 H 0.08 3.70 5.46 -2.39 -0.01 3.69 16 31 H 0.03 1.19 7.05 -2.39 -0.02 1.18 16 32 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 33 H 0.06 2.72 4.96 -2.39 -0.01 2.71 16 34 H 0.09 4.86 6.07 -2.39 -0.01 4.85 16 35 H 0.28 13.07 8.31 -92.71 -0.77 12.30 16 36 H 0.14 5.56 3.30 -2.91 -0.01 5.55 16 37 H 0.14 4.09 5.77 -2.91 -0.02 4.08 16 38 H 0.09 1.32 6.69 -2.39 -0.02 1.30 16 39 H 0.04 0.65 8.14 -2.38 -0.02 0.63 16 40 H 0.09 0.57 8.14 -2.38 -0.02 0.55 16 41 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.11 0.08 7.65 -2.38 -0.02 0.07 16 43 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.42 -0.39 8.30 -92.71 -0.77 -1.16 16 45 H 0.41 2.30 8.93 -92.71 -0.83 1.48 16 46 H 0.04 0.98 7.65 -2.39 -0.02 0.96 16 47 H 0.07 1.79 6.95 -2.39 -0.02 1.77 16 48 H 0.16 3.43 7.15 -2.91 -0.02 3.41 16 49 H 0.12 4.63 8.01 -2.91 -0.02 4.61 16 Total: -1.00 -79.66 375.74 0.40 -79.26 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: -0.58 Total: 24.18 kcal Atomic # 6 Polarization: -7.16 SS G_CDS: 5.37 Total: -1.79 kcal Atomic # 7 Polarization: -83.43 SS G_CDS: -6.30 Total: -89.73 kcal Atomic # 8 Polarization: -56.87 SS G_CDS: -0.12 Total: -56.99 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Total: -79.66 0.40 -79.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001337922329.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.672 kcal (2) G-P(sol) polarization free energy of solvation -79.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.398 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds