Wall clock time and date at job start Wed Apr 1 2020 03:03:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47015 * 2 1 4 4 C 1.46899 * 110.99820 * 169.99921 * 3 2 1 5 5 C 1.53239 * 109.33965 * 187.25486 * 4 3 2 6 6 N 1.47081 * 108.51785 * 306.17064 * 5 4 3 7 7 C 1.34779 * 120.88116 * 231.20336 * 6 5 4 8 8 O 1.21360 * 120.00428 * 171.81944 * 7 6 5 9 9 C 1.49354 * 120.00035 * 351.82130 * 7 6 5 10 10 O 1.21380 * 119.99976 * 353.46680 * 9 7 6 11 11 N 1.34775 * 120.00326 * 173.46279 * 9 7 6 12 12 C 1.39725 * 120.00115 * 183.56616 * 11 9 7 13 13 C 1.38928 * 120.07470 * 324.22003 * 12 11 9 14 14 C 1.38103 * 119.91842 * 179.76879 * 13 12 11 15 15 C 1.38291 * 120.07745 * 0.48398 * 14 13 12 16 16 C 1.50705 * 119.92178 * 179.76323 * 15 14 13 17 17 C 1.50693 * 109.47367 * 270.02437 * 16 15 14 18 18 H 1.07996 * 120.00170 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99915 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00095 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99879 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47372 * 60.00111 * 21 19 17 23 23 H 1.48502 * 109.46931 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46665 * 299.99577 * 21 19 17 25 25 C 1.38296 * 120.15321 * 359.79742 * 15 14 13 26 26 C 1.38094 * 120.07503 * 359.94596 * 25 15 14 27 27 C 1.47078 * 118.24188 * 51.18543 * 6 5 4 28 28 C 1.46896 * 111.00030 * 294.29948 * 3 2 1 29 29 H 1.08998 * 109.47023 * 60.00464 * 1 2 3 30 30 H 1.09003 * 109.46850 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47638 * 299.99493 * 1 2 3 32 32 H 1.09001 * 109.47593 * 239.99979 * 2 1 3 33 33 H 1.08998 * 109.47163 * 120.00310 * 2 1 3 34 34 H 1.08999 * 109.49334 * 307.21442 * 4 3 2 35 35 H 1.08998 * 109.49639 * 67.29279 * 4 3 2 36 36 H 1.09000 * 109.63006 * 65.88010 * 5 4 3 37 37 H 1.09002 * 109.62774 * 186.46278 * 5 4 3 38 38 H 0.96999 * 119.99585 * 3.56990 * 11 9 7 39 39 H 1.07997 * 120.04187 * 0.02562 * 13 12 11 40 40 H 1.08001 * 119.95901 * 180.25828 * 14 13 12 41 41 H 1.08997 * 109.47150 * 30.03060 * 16 15 14 42 42 H 1.09005 * 109.46683 * 150.02487 * 16 15 14 43 43 H 0.96999 * 120.00183 * 179.97438 * 20 19 17 44 44 H 1.07994 * 119.95850 * 179.97438 * 25 15 14 45 45 H 1.07998 * 120.03768 * 180.02562 * 26 25 15 46 46 H 1.08989 * 109.63484 * 189.10431 * 27 6 5 47 47 H 1.09006 * 109.78771 * 68.61453 * 27 6 5 48 48 H 1.08999 * 109.49522 * 292.70668 * 28 3 2 49 49 H 1.09000 * 109.49193 * 52.78682 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4684 1.4311 0.2382 5 6 3.9081 2.8889 0.4110 6 7 3.4445 3.6579 -0.7539 7 6 4.2947 4.4375 -1.4510 8 8 3.9357 4.9470 -2.4924 9 6 5.6787 4.6744 -0.9420 10 8 6.0006 4.2647 0.1542 11 7 6.5703 5.3431 -1.7000 12 6 7.8859 5.5000 -1.2563 13 6 8.1474 5.6830 0.0958 14 6 9.4494 5.8331 0.5313 15 6 10.4912 5.8113 -0.3778 16 6 11.9102 5.9807 0.1008 17 6 12.2701 7.4440 0.0978 18 1 11.5438 8.1781 -0.2186 19 6 13.5265 7.8458 0.4989 20 7 14.4111 6.9519 0.8836 21 14 13.9724 9.6599 0.4958 22 1 13.0542 10.3968 1.4008 23 1 15.3711 9.8266 0.9661 24 1 13.8466 10.1981 -0.8825 25 6 10.2339 5.6352 -1.7251 26 6 8.9349 5.4792 -2.1670 27 6 2.0287 3.5534 -1.1381 28 6 1.6630 2.0695 -1.2499 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.7066 0.8698 1.1417 35 1 3.9909 0.9919 -0.6116 36 1 3.4673 3.2991 1.3196 37 1 4.9953 2.9385 0.4734 38 1 6.2985 5.7154 -2.5535 39 1 7.3340 5.7038 0.8059 40 1 9.6538 5.9712 1.5828 41 1 12.0020 5.5860 1.1126 42 1 12.5845 5.4393 -0.5629 43 1 15.2951 7.2345 1.1655 44 1 11.0499 5.6191 -2.4324 45 1 8.7347 5.3413 -3.2193 46 1 1.8731 4.0422 -2.0997 47 1 1.4048 4.0282 -0.3808 48 1 2.2106 1.6214 -2.0790 49 1 0.5918 1.9711 -1.4256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354069065.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:31 Heat of formation + Delta-G solvation = -18.345919 kcal Electronic energy + Delta-G solvation = -29452.981613 eV Core-core repulsion = 25380.650773 eV Total energy + Delta-G solvation = -4072.330840 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -41.36061 -39.80438 -38.60773 -38.05165 -35.84693 -34.79403 -33.04913 -31.73463 -31.29404 -30.61607 -30.38885 -27.68187 -26.83337 -25.15336 -24.01269 -22.99313 -22.46912 -22.33796 -21.22164 -20.27583 -19.84694 -18.19239 -17.41152 -16.92581 -16.39806 -16.32389 -15.89371 -15.72495 -15.49548 -15.17196 -15.03778 -14.88571 -14.52578 -14.28835 -14.23382 -13.89885 -13.26293 -13.18629 -13.01708 -12.82149 -12.63355 -12.51096 -12.37526 -12.15942 -11.97475 -11.72845 -11.57627 -11.46688 -11.34439 -11.30969 -11.20031 -10.82712 -10.62049 -10.40874 -10.09690 -9.67123 -9.39602 -9.28759 -9.24266 -8.75556 -8.44034 -8.37141 -7.52817 -6.05478 -4.09821 1.03298 1.89259 1.97263 2.12337 2.96674 3.15765 3.31470 3.35685 3.38857 3.44919 4.06137 4.33790 4.42184 4.45053 4.50747 4.53181 4.71427 4.82113 4.96548 4.98710 5.03239 5.11129 5.21612 5.28383 5.35714 5.37203 5.41128 5.44803 5.48740 5.51660 5.65922 5.75491 5.86397 5.89566 5.99232 6.02160 6.11695 6.48139 6.53979 6.56811 6.59509 6.74495 6.80361 7.08652 7.11309 7.17802 7.45527 7.49648 7.61303 7.81133 7.84093 7.89920 8.29516 8.95192 9.54157 11.04090 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027319 B = 0.001825 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.699227 B =15339.721790 C =15800.532748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 N -0.540 5.540 4 C 0.040 3.960 5 C 0.078 3.922 6 N -0.584 5.584 7 C 0.513 3.487 8 O -0.523 6.523 9 C 0.504 3.496 10 O -0.496 6.496 11 N -0.631 5.631 12 C 0.091 3.909 13 C -0.112 4.112 14 C -0.110 4.110 15 C -0.035 4.035 16 C 0.047 3.953 17 C -0.514 4.514 18 H 0.057 0.943 19 C 0.059 3.941 20 N -0.894 5.894 21 Si 0.896 3.104 22 H -0.276 1.276 23 H -0.287 1.287 24 H -0.276 1.276 25 C -0.109 4.109 26 C -0.134 4.134 27 C 0.113 3.887 28 C 0.039 3.961 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.064 0.936 32 H 0.033 0.967 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.038 0.962 36 H 0.080 0.920 37 H 0.143 0.857 38 H 0.418 0.582 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.030 0.970 42 H 0.030 0.970 43 H 0.263 0.737 44 H 0.125 0.875 45 H 0.117 0.883 46 H 0.098 0.902 47 H 0.082 0.918 48 H 0.039 0.961 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.223 -12.674 -3.911 30.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.266 5.266 4 C -0.089 4.089 5 C -0.043 4.043 6 N -0.318 5.318 7 C 0.295 3.705 8 O -0.399 6.399 9 C 0.286 3.714 10 O -0.373 6.373 11 N -0.276 5.276 12 C -0.001 4.001 13 C -0.131 4.131 14 C -0.128 4.128 15 C -0.035 4.035 16 C 0.010 3.990 17 C -0.552 4.552 18 H 0.075 0.925 19 C -0.143 4.143 20 N -0.532 5.532 21 Si 0.723 3.277 22 H -0.202 1.202 23 H -0.212 1.212 24 H -0.202 1.202 25 C -0.128 4.128 26 C -0.153 4.153 27 C -0.009 4.009 28 C -0.089 4.089 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.109 0.891 35 H 0.056 0.944 36 H 0.098 0.902 37 H 0.160 0.840 38 H 0.255 0.745 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.048 0.952 42 H 0.048 0.952 43 H 0.072 0.928 44 H 0.143 0.857 45 H 0.135 0.865 46 H 0.116 0.884 47 H 0.100 0.900 48 H 0.057 0.943 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -27.269 -12.483 -3.257 30.167 hybrid contribution 0.456 0.690 -1.051 1.338 sum -26.813 -11.793 -4.308 29.607 Atomic orbital electron populations 1.21812 0.94681 1.01696 1.02529 1.22088 0.96244 0.88460 1.00994 1.62032 1.13944 1.15981 1.34594 1.22570 0.87241 0.97410 1.01654 1.22961 1.05074 0.89049 0.87257 1.47976 1.09361 1.44114 1.30301 1.20024 0.86156 0.80109 0.84189 1.90758 1.77492 1.49768 1.21898 1.20105 0.86094 0.79466 0.85721 1.90550 1.78362 1.48624 1.19719 1.43038 1.08743 1.52500 1.23335 1.17522 0.81847 1.06690 0.94042 1.21094 0.97653 1.00463 0.93913 1.21024 0.91305 1.00307 1.00194 1.20795 0.98565 0.91553 0.92632 1.18373 0.85977 0.97498 0.97140 1.21015 0.98078 0.91462 1.44613 0.92471 1.25005 0.96370 0.97716 0.95169 1.69942 1.05604 1.33395 1.44292 0.86594 0.77396 0.85141 0.78531 1.20158 1.21233 1.20175 1.20913 0.95201 1.00569 0.96074 1.20799 0.92109 1.04114 0.98327 1.21843 0.80230 0.96218 1.02633 1.22528 1.01767 0.93958 0.90691 0.92672 0.92201 0.91684 0.94890 0.90477 0.89068 0.94383 0.90215 0.84046 0.74525 0.85385 0.85830 0.95176 0.95216 0.92762 0.85750 0.86503 0.88369 0.90018 0.94259 0.88978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.72 9.84 37.15 0.37 -0.36 16 2 C 0.05 0.29 5.68 -3.82 -0.02 0.27 16 3 N -0.54 -3.94 4.63 -234.33 -1.08 -5.03 16 4 C 0.04 0.31 5.62 -3.70 -0.02 0.29 16 5 C 0.08 0.72 6.10 -3.60 -0.02 0.70 16 6 N -0.58 -5.91 3.01 -173.01 -0.52 -6.43 16 7 C 0.51 6.21 7.74 -11.63 -0.09 6.12 16 8 O -0.52 -7.09 15.96 5.49 0.09 -7.00 16 9 C 0.50 6.66 7.57 -11.63 -0.09 6.57 16 10 O -0.50 -7.18 10.71 5.47 0.06 -7.12 16 11 N -0.63 -8.36 5.32 -10.29 -0.05 -8.42 16 12 C 0.09 1.45 6.28 -83.75 -0.53 0.92 16 13 C -0.11 -1.94 8.68 -39.38 -0.34 -2.29 16 14 C -0.11 -2.14 9.69 -39.61 -0.38 -2.52 16 15 C -0.03 -0.74 5.07 -104.58 -0.53 -1.27 16 16 C 0.05 1.18 5.10 -29.04 -0.15 1.04 16 17 C -0.51 -14.16 9.09 -34.44 -0.31 -14.47 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 19 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 20 N -0.89 -26.10 13.29 55.43 0.74 -25.36 16 21 Si 0.90 21.35 29.54 -169.99 -5.02 16.33 16 22 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 23 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 25 C -0.11 -2.03 9.69 -39.61 -0.38 -2.42 16 26 C -0.13 -2.12 9.97 -39.38 -0.39 -2.52 16 27 C 0.11 0.91 6.62 -3.60 -0.02 0.89 16 28 C 0.04 0.27 5.46 -3.70 -0.02 0.25 16 29 H 0.05 0.26 6.40 -51.93 -0.33 -0.08 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.03 0.20 8.12 -51.93 -0.42 -0.22 16 33 H 0.08 0.42 7.97 -51.93 -0.41 0.01 16 34 H 0.09 0.61 7.99 -51.93 -0.41 0.19 16 35 H 0.04 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.14 1.55 4.45 -54.16 -0.24 1.31 16 38 H 0.42 4.72 8.30 -40.82 -0.34 4.38 16 39 H 0.13 2.15 6.31 -52.49 -0.33 1.81 16 40 H 0.12 2.35 8.06 -52.49 -0.42 1.92 16 41 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 42 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 45 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 46 H 0.10 0.83 7.05 -51.94 -0.37 0.46 16 47 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 48 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 49 H 0.09 0.50 6.16 -51.93 -0.32 0.18 16 LS Contribution 395.44 15.07 5.96 5.96 Total: -1.00 -30.91 395.44 -10.24 -41.15 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.37 Total: 3.15 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -3.04 Total: -7.23 kcal Atomic # 7 Polarization: -44.31 SS G_CDS: -0.92 Total: -45.23 kcal Atomic # 8 Polarization: -14.27 SS G_CDS: 0.15 Total: -14.12 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -30.91 -10.24 -41.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354069065.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.803 kcal (2) G-P(sol) polarization free energy of solvation -30.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds