Wall clock time and date at job start Wed Apr 1 2020 03:03:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46903 * 109.47015 * 2 1 4 4 C 1.46899 * 110.99820 * 169.99921 * 3 2 1 5 5 C 1.53239 * 109.33965 * 187.25486 * 4 3 2 6 6 N 1.47081 * 108.51785 * 306.17064 * 5 4 3 7 7 C 1.34779 * 120.88116 * 231.20336 * 6 5 4 8 8 O 1.21360 * 120.00428 * 171.81944 * 7 6 5 9 9 C 1.49354 * 120.00035 * 351.82130 * 7 6 5 10 10 O 1.21380 * 119.99976 * 353.46680 * 9 7 6 11 11 N 1.34775 * 120.00326 * 173.46279 * 9 7 6 12 12 C 1.39725 * 120.00115 * 183.56616 * 11 9 7 13 13 C 1.38928 * 120.07470 * 324.22003 * 12 11 9 14 14 C 1.38103 * 119.91842 * 179.76879 * 13 12 11 15 15 C 1.38291 * 120.07745 * 0.48398 * 14 13 12 16 16 C 1.50705 * 119.92178 * 179.76323 * 15 14 13 17 17 C 1.50693 * 109.47367 * 270.02437 * 16 15 14 18 18 H 1.07996 * 120.00170 * 0.02562 * 17 16 15 19 19 C 1.37875 * 119.99915 * 180.02562 * 17 16 15 20 20 N 1.31511 * 120.00095 * 0.02562 * 19 17 16 21 21 Si 1.86807 * 119.99879 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47372 * 60.00111 * 21 19 17 23 23 H 1.48502 * 109.46931 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.46665 * 299.99577 * 21 19 17 25 25 C 1.38296 * 120.15321 * 359.79742 * 15 14 13 26 26 C 1.38094 * 120.07503 * 359.94596 * 25 15 14 27 27 C 1.47078 * 118.24188 * 51.18543 * 6 5 4 28 28 C 1.46896 * 111.00030 * 294.29948 * 3 2 1 29 29 H 1.08998 * 109.47023 * 60.00464 * 1 2 3 30 30 H 1.09003 * 109.46850 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47638 * 299.99493 * 1 2 3 32 32 H 1.09001 * 109.47593 * 239.99979 * 2 1 3 33 33 H 1.08998 * 109.47163 * 120.00310 * 2 1 3 34 34 H 1.08999 * 109.49334 * 307.21442 * 4 3 2 35 35 H 1.08998 * 109.49639 * 67.29279 * 4 3 2 36 36 H 1.09000 * 109.63006 * 65.88010 * 5 4 3 37 37 H 1.09002 * 109.62774 * 186.46278 * 5 4 3 38 38 H 0.96999 * 119.99585 * 3.56990 * 11 9 7 39 39 H 1.07997 * 120.04187 * 0.02562 * 13 12 11 40 40 H 1.08001 * 119.95901 * 180.25828 * 14 13 12 41 41 H 1.08997 * 109.47150 * 30.03060 * 16 15 14 42 42 H 1.09005 * 109.46683 * 150.02487 * 16 15 14 43 43 H 0.96999 * 120.00183 * 179.97438 * 20 19 17 44 44 H 1.07994 * 119.95850 * 179.97438 * 25 15 14 45 45 H 1.07998 * 120.03768 * 180.02562 * 26 25 15 46 46 H 1.08989 * 109.63484 * 189.10431 * 27 6 5 47 47 H 1.09006 * 109.78771 * 68.61453 * 27 6 5 48 48 H 1.08999 * 109.49522 * 292.70668 * 28 3 2 49 49 H 1.09000 * 109.49193 * 52.78682 * 28 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4684 1.4311 0.2382 5 6 3.9081 2.8889 0.4110 6 7 3.4445 3.6579 -0.7539 7 6 4.2947 4.4375 -1.4510 8 8 3.9357 4.9470 -2.4924 9 6 5.6787 4.6744 -0.9420 10 8 6.0006 4.2647 0.1542 11 7 6.5703 5.3431 -1.7000 12 6 7.8859 5.5000 -1.2563 13 6 8.1474 5.6830 0.0958 14 6 9.4494 5.8331 0.5313 15 6 10.4912 5.8113 -0.3778 16 6 11.9102 5.9807 0.1008 17 6 12.2701 7.4440 0.0978 18 1 11.5438 8.1781 -0.2186 19 6 13.5265 7.8458 0.4989 20 7 14.4111 6.9519 0.8836 21 14 13.9724 9.6599 0.4958 22 1 13.0542 10.3968 1.4008 23 1 15.3711 9.8266 0.9661 24 1 13.8466 10.1981 -0.8825 25 6 10.2339 5.6352 -1.7251 26 6 8.9349 5.4792 -2.1670 27 6 2.0287 3.5534 -1.1381 28 6 1.6630 2.0695 -1.2499 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 1.8934 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 3.7066 0.8698 1.1417 35 1 3.9909 0.9919 -0.6116 36 1 3.4673 3.2991 1.3196 37 1 4.9953 2.9385 0.4734 38 1 6.2985 5.7154 -2.5535 39 1 7.3340 5.7038 0.8059 40 1 9.6538 5.9712 1.5828 41 1 12.0020 5.5860 1.1126 42 1 12.5845 5.4393 -0.5629 43 1 15.2951 7.2345 1.1655 44 1 11.0499 5.6191 -2.4324 45 1 8.7347 5.3413 -3.2193 46 1 1.8731 4.0422 -2.0997 47 1 1.4048 4.0282 -0.3808 48 1 2.2106 1.6214 -2.0790 49 1 0.5918 1.9711 -1.4256 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354069065.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:03:30 Heat of formation + Delta-G solvation = -37.736917 kcal Electronic energy + Delta-G solvation = -29453.822470 eV Core-core repulsion = 25380.650773 eV Total energy + Delta-G solvation = -4073.171697 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.37490 -40.83093 -39.59130 -39.15218 -36.85649 -35.88281 -34.96326 -32.39749 -32.29522 -31.89036 -31.77788 -28.94134 -27.98711 -26.23578 -25.11547 -24.30198 -23.82885 -23.04341 -22.20517 -21.58815 -20.76878 -19.15608 -18.50776 -18.47602 -17.92197 -17.36814 -16.86918 -16.60834 -16.48663 -16.17264 -15.97441 -15.94817 -15.78488 -15.32906 -15.24518 -14.85037 -14.61559 -14.50123 -14.31227 -14.03930 -13.77274 -13.51819 -13.29727 -13.19501 -12.99579 -12.95335 -12.74663 -12.59155 -12.44227 -12.36092 -12.22302 -12.11858 -11.98405 -11.72555 -11.67069 -11.49108 -11.13233 -10.58631 -10.36438 -10.06092 -9.79075 -9.36148 -8.99720 -8.17792 -6.31697 -0.05762 0.54117 0.60794 1.10309 1.41449 1.43707 1.51924 1.93905 2.24752 2.41008 2.85349 2.94466 3.09046 3.12433 3.78840 3.88432 3.95968 4.02095 4.10778 4.17945 4.20192 4.33892 4.36695 4.42768 4.48405 4.54514 4.57008 4.63059 4.64233 4.66107 4.78659 4.85940 4.98831 5.00623 5.10054 5.11838 5.13849 5.26883 5.32929 5.37224 5.38745 5.41217 5.56479 5.76079 5.80227 5.97868 5.99852 6.06594 6.07701 6.12292 6.22659 6.53958 6.76684 6.80854 7.36797 8.90428 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.027319 B = 0.001825 C = 0.001772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.699227 B =15339.721790 C =15800.532748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 N -0.545 5.545 4 C 0.044 3.956 5 C 0.080 3.920 6 N -0.578 5.578 7 C 0.516 3.484 8 O -0.539 6.539 9 C 0.505 3.495 10 O -0.509 6.509 11 N -0.625 5.625 12 C 0.107 3.893 13 C -0.113 4.113 14 C -0.118 4.118 15 C -0.067 4.067 16 C 0.056 3.944 17 C -0.529 4.529 18 H 0.056 0.944 19 C 0.005 3.995 20 N -0.929 5.929 21 Si 0.964 3.036 22 H -0.270 1.270 23 H -0.281 1.281 24 H -0.267 1.267 25 C -0.113 4.113 26 C -0.120 4.120 27 C 0.111 3.889 28 C 0.044 3.956 29 H 0.057 0.943 30 H 0.069 0.931 31 H 0.060 0.940 32 H 0.031 0.969 33 H 0.081 0.919 34 H 0.103 0.897 35 H 0.030 0.970 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.430 0.570 39 H 0.135 0.865 40 H 0.117 0.883 41 H 0.003 0.997 42 H 0.008 0.992 43 H 0.265 0.735 44 H 0.128 0.872 45 H 0.156 0.844 46 H 0.096 0.904 47 H 0.093 0.907 48 H 0.030 0.970 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.830 -12.548 -4.922 32.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 N -0.270 5.270 4 C -0.084 4.084 5 C -0.041 4.041 6 N -0.311 5.311 7 C 0.298 3.702 8 O -0.417 6.417 9 C 0.288 3.712 10 O -0.385 6.385 11 N -0.272 5.272 12 C 0.014 3.986 13 C -0.133 4.133 14 C -0.137 4.137 15 C -0.067 4.067 16 C 0.019 3.981 17 C -0.567 4.567 18 H 0.074 0.926 19 C -0.193 4.193 20 N -0.569 5.569 21 Si 0.789 3.211 22 H -0.195 1.195 23 H -0.207 1.207 24 H -0.192 1.192 25 C -0.132 4.132 26 C -0.140 4.140 27 C -0.010 4.010 28 C -0.085 4.085 29 H 0.076 0.924 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.049 0.951 33 H 0.100 0.900 34 H 0.121 0.879 35 H 0.048 0.952 36 H 0.102 0.898 37 H 0.144 0.856 38 H 0.269 0.731 39 H 0.153 0.847 40 H 0.135 0.865 41 H 0.021 0.979 42 H 0.026 0.974 43 H 0.074 0.926 44 H 0.146 0.854 45 H 0.174 0.826 46 H 0.114 0.886 47 H 0.111 0.889 48 H 0.048 0.952 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -29.921 -12.377 -4.269 32.660 hybrid contribution 1.123 0.539 -0.719 1.438 sum -28.798 -11.838 -4.988 31.533 Atomic orbital electron populations 1.21779 0.93712 1.02357 1.02432 1.22147 0.96994 0.87581 1.01134 1.62062 1.13346 1.16939 1.34678 1.22511 0.87716 0.96264 1.01939 1.22902 1.04149 0.89989 0.87095 1.48115 1.10001 1.43051 1.29942 1.19742 0.85723 0.80553 0.84214 1.90756 1.77597 1.50788 1.22562 1.20390 0.86528 0.78892 0.85388 1.90574 1.78757 1.48872 1.20324 1.42969 1.07640 1.52673 1.23931 1.17571 0.83202 1.04394 0.93450 1.21122 0.96703 1.00430 0.95018 1.20961 0.91976 1.01004 0.99740 1.20481 0.96566 0.95325 0.94349 1.18111 0.88610 0.96192 0.95202 1.21359 0.98310 0.92650 1.44400 0.92599 1.25904 0.96278 1.02443 0.94659 1.70069 1.06024 1.35620 1.45197 0.85515 0.77236 0.79441 0.78956 1.19456 1.20658 1.19175 1.20974 0.96807 1.00522 0.94901 1.21051 0.90565 1.02180 1.00212 1.22017 0.78920 0.97230 1.02877 1.22520 1.02782 0.92917 0.90253 0.92373 0.91232 0.92094 0.95068 0.90045 0.87854 0.95213 0.89769 0.85577 0.73079 0.84706 0.86539 0.97870 0.97412 0.92604 0.85448 0.82642 0.88558 0.88891 0.95173 0.87058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.84 71.98 0.71 -0.36 16 2 C 0.05 0.48 5.68 86.30 0.49 0.97 16 3 N -0.54 -6.84 4.63 -895.27 -4.14 -10.99 16 4 C 0.04 0.62 5.62 86.38 0.49 1.11 16 5 C 0.08 1.38 6.10 86.35 0.53 1.90 16 6 N -0.58 -10.77 3.01 -819.63 -2.47 -13.24 16 7 C 0.52 11.66 7.74 87.24 0.68 12.33 16 8 O -0.54 -13.66 15.96 -3.28 -0.05 -13.71 16 9 C 0.50 12.55 7.57 87.24 0.66 13.21 16 10 O -0.51 -14.16 10.71 -3.34 -0.04 -14.19 16 11 N -0.63 -15.20 5.32 -304.83 -1.62 -16.83 16 12 C 0.11 3.21 6.28 38.22 0.24 3.45 16 13 C -0.11 -3.87 8.68 22.40 0.19 -3.68 16 14 C -0.12 -4.71 9.69 22.25 0.22 -4.50 16 15 C -0.07 -2.91 5.07 -19.84 -0.10 -3.01 16 16 C 0.06 2.97 5.10 29.10 0.15 3.12 16 17 C -0.53 -30.04 9.09 25.60 0.23 -29.81 16 18 H 0.06 3.11 7.74 -2.91 -0.02 3.09 16 19 C 0.01 0.31 5.46 84.65 0.46 0.77 16 20 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 21 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 25 C -0.11 -4.20 9.69 22.25 0.22 -3.98 16 26 C -0.12 -3.56 9.97 22.40 0.22 -3.34 16 27 C 0.11 1.57 6.62 86.35 0.57 2.15 16 28 C 0.04 0.52 5.46 86.38 0.47 0.99 16 29 H 0.06 0.39 6.40 -2.39 -0.02 0.38 16 30 H 0.07 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 32 H 0.03 0.32 8.12 -2.39 -0.02 0.30 16 33 H 0.08 0.73 7.97 -2.39 -0.02 0.71 16 34 H 0.10 1.20 7.99 -2.39 -0.02 1.18 16 35 H 0.03 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.13 2.65 4.45 -37.77 -0.17 2.48 16 38 H 0.43 8.55 8.30 -92.71 -0.77 7.78 16 39 H 0.14 4.42 6.31 -2.91 -0.02 4.40 16 40 H 0.12 4.66 8.06 -2.91 -0.02 4.64 16 41 H 0.00 0.17 8.08 -2.39 -0.02 0.15 16 42 H 0.01 0.43 8.08 -2.38 -0.02 0.41 16 43 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 44 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 45 H 0.16 3.41 8.06 -2.91 -0.02 3.39 16 46 H 0.10 1.44 7.05 -2.39 -0.02 1.43 16 47 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 48 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 49 H 0.11 0.90 6.16 -2.39 -0.01 0.89 16 Total: -1.00 -67.40 395.44 0.45 -66.95 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: 0.04 Total: 20.07 kcal Atomic # 6 Polarization: -15.12 SS G_CDS: 6.42 Total: -8.69 kcal Atomic # 7 Polarization: -88.62 SS G_CDS: -7.95 Total: -96.57 kcal Atomic # 8 Polarization: -27.82 SS G_CDS: -0.09 Total: -27.91 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -67.40 0.45 -66.95 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354069065.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.215 kcal (2) G-P(sol) polarization free energy of solvation -67.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds