Wall clock time and date at job start Wed Apr 1 2020 03:05:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 N 1.46505 * 109.46664 * 2 1
4 4 C 1.34419 * 124.34751 * 90.02498 * 3 2 1
5 5 O 1.21280 * 124.94442 * 0.46207 * 4 3 2
6 6 C 1.51279 * 110.11675 * 180.42638 * 4 3 2
7 7 C 1.54636 * 104.19286 * 16.24946 * 6 4 3
8 8 H 1.08998 * 110.96670 * 217.04928 * 7 6 4
9 9 C 1.50703 * 110.96703 * 93.32266 * 7 6 4
10 10 O 1.21273 * 119.99963 * 241.45403 * 9 7 6
11 11 N 1.34779 * 119.99944 * 61.45242 * 9 7 6
12 12 C 1.46499 * 119.99872 * 179.97438 * 11 9 7
13 13 C 1.53000 * 109.46840 * 179.97438 * 12 11 9
14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 11
15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12
16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13
17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13
18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14
19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14
20 20 H 1.48506 * 109.46838 * 89.99826 * 19 17 15
21 21 H 1.48497 * 109.47419 * 209.99978 * 19 17 15
22 22 H 1.48499 * 109.47011 * 330.00539 * 19 17 15
23 23 C 1.46753 * 124.34997 * 270.04208 * 3 2 1
24 24 H 1.09006 * 110.24654 * 43.96723 * 23 3 2
25 25 C 1.50702 * 110.24992 * 281.96858 * 23 3 2
26 26 C 1.38672 * 120.41761 * 143.67080 * 25 23 3
27 27 C 1.38628 * 118.41937 * 179.78449 * 26 25 23
28 28 C 1.38231 * 119.16078 * 0.46843 * 27 26 25
29 29 N 1.31855 * 120.76140 * 359.77391 * 28 27 26
30 30 C 1.31889 * 121.72539 * 359.97438 * 29 28 27
31 31 H 1.09000 * 109.46970 * 60.00679 * 1 2 3
32 32 H 1.09002 * 109.46841 * 179.97438 * 1 2 3
33 33 H 1.08996 * 109.47026 * 299.99751 * 1 2 3
34 34 H 1.08996 * 109.47026 * 240.00249 * 2 1 3
35 35 H 1.09006 * 109.46714 * 119.99999 * 2 1 3
36 36 H 1.09001 * 110.48349 * 257.57657 * 6 4 3
37 37 H 1.08989 * 110.60294 * 134.98547 * 6 4 3
38 38 H 0.97005 * 119.99680 * 359.97438 * 11 9 7
39 39 H 1.09001 * 109.46813 * 60.00258 * 12 11 9
40 40 H 1.08992 * 109.47397 * 300.00319 * 12 11 9
41 41 H 1.09002 * 109.47398 * 300.00326 * 13 12 11
42 42 H 1.09001 * 109.47194 * 60.00507 * 13 12 11
43 43 H 1.09002 * 109.47153 * 300.00319 * 14 13 12
44 44 H 1.08998 * 109.47533 * 59.99948 * 14 13 12
45 45 H 0.97002 * 119.99731 * 180.02562 * 18 17 15
46 46 H 1.08002 * 120.79560 * 0.02637 * 26 25 23
47 47 H 1.07994 * 120.42343 * 180.26975 * 27 26 25
48 48 H 1.07992 * 119.61984 * 179.79031 * 28 27 26
49 49 H 1.08004 * 119.61867 * 180.02562 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2715 2.0962 1.1098
5 8 2.1366 1.6890 2.2442
6 6 2.7501 3.4823 0.7379
7 6 2.3517 3.6349 -0.7484
8 1 3.1109 4.1884 -1.3008
9 6 1.0036 4.2955 -0.8803
10 8 0.0870 3.7028 -1.4088
11 7 0.8167 5.5450 -0.4109
12 6 -0.4936 6.1874 -0.5396
13 6 -0.4361 7.5898 0.0694
14 6 -1.8046 8.2605 -0.0644
15 6 -1.7479 9.6420 0.5349
16 1 -0.8275 10.0055 0.9676
17 6 -2.8705 10.4424 0.5299
18 7 -3.9911 9.9999 0.0026
19 14 -2.8003 12.1546 1.2735
20 1 -2.4027 13.1321 0.2285
21 1 -4.1375 12.5176 1.8077
22 1 -1.8047 12.1755 2.3751
23 6 2.2934 2.1623 -1.2116
24 1 1.4919 2.0268 -1.9379
25 6 3.6145 1.7508 -1.8087
26 6 3.7814 1.7122 -3.1848
27 6 5.0154 1.3320 -3.6893
28 6 6.0282 0.9970 -2.8103
29 7 5.8320 1.0403 -1.5071
30 6 4.6730 1.4020 -0.9919
31 1 -0.3633 0.5137 -0.8901
32 1 -0.3633 -1.0277 -0.0005
33 1 -0.3633 0.5138 0.8900
34 1 1.8934 -0.5138 -0.8900
35 1 1.8933 -0.5139 0.8901
36 1 3.8315 3.5559 0.8525
37 1 2.2507 4.2364 1.3461
38 1 1.5498 6.0189 0.0122
39 1 -1.2423 5.5941 -0.0146
40 1 -0.7610 6.2594 -1.5938
41 1 -0.1688 7.5174 1.1237
42 1 0.3126 8.1833 -0.4552
43 1 -2.0723 8.3329 -1.1186
44 1 -2.5531 7.6669 0.4605
45 1 -4.7809 10.5632 -0.0013
46 1 2.9706 1.9758 -3.8478
47 1 5.1824 1.2950 -4.7556
48 1 6.9914 0.6965 -3.1952
49 1 4.5499 1.4259 0.0808
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001360151462.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:05:05
Heat of formation + Delta-G solvation = -46.754776 kcal
Electronic energy + Delta-G solvation = -30084.535746 eV
Core-core repulsion = 26010.973005 eV
Total energy + Delta-G solvation = -4073.562741 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-41.80568 -40.15206 -39.23580 -36.86312 -35.51386 -34.39502 -33.41958 -32.99475
-31.82359 -31.22025 -29.95318 -27.85744 -26.89838 -24.72443 -23.98008 -23.53009
-23.04477 -22.00452 -20.81161 -19.99435 -19.59704 -18.02826 -17.53153 -17.10334
-16.61207 -16.45470 -15.93886 -15.83924 -15.58311 -15.20638 -15.03858 -14.53442
-14.41954 -14.17150 -14.11088 -13.89092 -13.79695 -13.70224 -13.49830 -12.91665
-12.78999 -12.44708 -12.32385 -12.20691 -12.08864 -11.95211 -11.85327 -11.74237
-11.31591 -10.93670 -10.79878 -10.63432 -10.29796 -10.09325 -10.02631 -9.95299
-9.93096 -9.55799 -9.39735 -9.16001 -9.08532 -8.93930 -8.40683 -6.05311
-4.08575 0.57628 0.80977 2.26663 2.48960 2.59432 3.05943 3.28556
3.33935 3.35359 3.38160 3.89836 3.92140 3.94360 4.21408 4.37663
4.41377 4.42000 4.49990 4.60119 4.67620 4.77918 4.91332 4.95970
5.03567 5.14890 5.17366 5.24695 5.30646 5.32391 5.37335 5.45114
5.62326 5.65584 5.67551 5.68737 5.73698 6.03847 6.07345 6.19272
6.26071 6.33270 6.51842 6.72536 6.77266 6.93161 7.50292 7.51814
7.58826 7.70634 7.85987 7.92908 8.15406 8.33964 8.97995 9.55915
11.05934
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.015679 B = 0.002121 C = 0.002027
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1785.373512 B =13196.042716 C =13811.613973
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C 0.125 3.875
3 N -0.607 5.607
4 C 0.519 3.481
5 O -0.522 6.522
6 C -0.152 4.152
7 C -0.117 4.117
8 H 0.126 0.874
9 C 0.517 3.483
10 O -0.534 6.534
11 N -0.720 5.720
12 C 0.116 3.884
13 C -0.121 4.121
14 C 0.024 3.976
15 C -0.523 4.523
16 H 0.055 0.945
17 C 0.057 3.943
18 N -0.894 5.894
19 Si 0.893 3.107
20 H -0.280 1.280
21 H -0.286 1.286
22 H -0.274 1.274
23 C 0.192 3.808
24 H 0.120 0.880
25 C -0.152 4.152
26 C -0.059 4.059
27 C -0.170 4.170
28 C 0.099 3.901
29 N -0.483 5.483
30 C 0.117 3.883
31 H 0.064 0.936
32 H 0.066 0.934
33 H 0.060 0.940
34 H 0.076 0.924
35 H 0.083 0.917
36 H 0.117 0.883
37 H 0.113 0.887
38 H 0.400 0.600
39 H 0.065 0.935
40 H 0.066 0.934
41 H 0.055 0.945
42 H 0.055 0.945
43 H 0.019 0.981
44 H 0.019 0.981
45 H 0.261 0.739
46 H 0.140 0.860
47 H 0.138 0.862
48 H 0.156 0.844
49 H 0.149 0.851
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 19.625 -20.491 -7.283 29.292
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.228 4.228
2 C 0.004 3.996
3 N -0.340 5.340
4 C 0.306 3.694
5 O -0.397 6.397
6 C -0.192 4.192
7 C -0.139 4.139
8 H 0.144 0.856
9 C 0.302 3.698
10 O -0.411 6.411
11 N -0.370 5.370
12 C -0.006 4.006
13 C -0.159 4.159
14 C -0.014 4.014
15 C -0.561 4.561
16 H 0.074 0.926
17 C -0.145 4.145
18 N -0.532 5.532
19 Si 0.721 3.279
20 H -0.206 1.206
21 H -0.212 1.212
22 H -0.199 1.199
23 C 0.087 3.913
24 H 0.137 0.863
25 C -0.155 4.155
26 C -0.085 4.085
27 C -0.190 4.190
28 C -0.058 4.058
29 N -0.191 5.191
30 C -0.040 4.040
31 H 0.083 0.917
32 H 0.085 0.915
33 H 0.079 0.921
34 H 0.095 0.905
35 H 0.101 0.899
36 H 0.135 0.865
37 H 0.131 0.869
38 H 0.234 0.766
39 H 0.084 0.916
40 H 0.084 0.916
41 H 0.074 0.926
42 H 0.074 0.926
43 H 0.037 0.963
44 H 0.037 0.963
45 H 0.071 0.929
46 H 0.158 0.842
47 H 0.156 0.844
48 H 0.174 0.826
49 H 0.166 0.834
Dipole moment (debyes) X Y Z Total
from point charges 19.327 -21.392 -6.504 29.554
hybrid contribution -0.415 1.520 -0.152 1.583
sum 18.912 -19.872 -6.656 28.229
Atomic orbital electron populations
1.22148 0.95158 1.02198 1.03298 1.21356 0.94846 0.80415 1.02963
1.48284 1.65356 1.14172 1.06212 1.20747 0.76622 0.87503 0.84500
1.90755 1.52940 1.75278 1.20777 1.22474 1.04553 0.97123 0.95052
1.22339 0.97765 0.95886 0.97930 0.85573 1.20002 0.89083 0.81998
0.78764 1.90709 1.43189 1.63608 1.43568 1.46166 1.15258 1.15345
1.60248 1.21699 0.82625 0.94654 1.01611 1.21898 1.02356 0.92162
0.99508 1.19025 0.89789 0.94987 0.97560 1.21189 0.96681 0.99608
1.38642 0.92630 1.25034 0.95501 0.98481 0.95464 1.69965 1.01178
1.36998 1.45109 0.86576 0.77367 0.84509 0.79439 1.20648 1.21189
1.19869 1.20244 0.94249 0.88526 0.88292 0.86251 1.21074 0.97006
1.02748 0.94692 1.21517 0.97780 0.94947 0.94306 1.22180 0.94046
1.01081 1.01686 1.22868 0.99197 0.94998 0.88699 1.67762 1.23395
1.13151 1.14799 1.22567 0.87580 0.93618 1.00261 0.91715 0.91524
0.92116 0.90515 0.89882 0.86539 0.86883 0.76611 0.91634 0.91554
0.92628 0.92641 0.96297 0.96272 0.92900 0.84239 0.84410 0.82627
0.83379
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -1.63 10.24 37.16 0.38 -1.25 16
2 C 0.13 1.12 6.65 -4.04 -0.03 1.09 16
3 N -0.61 -5.98 2.03 -166.19 -0.34 -6.32 16
4 C 0.52 6.05 6.92 -10.86 -0.08 5.98 16
5 O -0.52 -8.08 17.59 5.56 0.10 -7.99 16
6 C -0.15 -1.27 5.91 -26.74 -0.16 -1.43 16
7 C -0.12 -0.98 3.05 -90.13 -0.28 -1.25 16
8 H 0.13 0.75 7.89 -51.93 -0.41 0.34 16
9 C 0.52 6.34 7.16 -10.98 -0.08 6.27 16
10 O -0.53 -8.47 15.51 5.56 0.09 -8.39 16
11 N -0.72 -8.90 5.28 -60.30 -0.32 -9.22 16
12 C 0.12 1.89 5.67 -4.04 -0.02 1.87 16
13 C -0.12 -2.24 5.27 -26.73 -0.14 -2.38 16
14 C 0.02 0.59 4.97 -27.89 -0.14 0.45 16
15 C -0.52 -14.34 9.11 -34.44 -0.31 -14.65 16
16 H 0.06 1.47 7.74 -52.49 -0.41 1.06 16
17 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16
18 N -0.89 -26.51 13.29 55.43 0.74 -25.77 16
19 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 16
20 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16
21 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16
22 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16
23 C 0.19 1.63 2.74 -68.17 -0.19 1.44 16
24 H 0.12 1.13 6.87 -51.93 -0.36 0.77 16
25 C -0.15 -1.12 4.91 -104.48 -0.51 -1.63 16
26 C -0.06 -0.37 9.85 -39.28 -0.39 -0.75 16
27 C -0.17 -0.93 10.11 -39.44 -0.40 -1.33 16
28 C 0.10 0.67 11.18 -17.54 -0.20 0.47 16
29 N -0.48 -4.40 10.36 -13.25 -0.14 -4.54 16
30 C 0.12 0.99 10.22 -17.55 -0.18 0.81 16
31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
32 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16
33 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16
34 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16
35 H 0.08 0.77 7.92 -51.93 -0.41 0.36 16
36 H 0.12 0.70 8.06 -51.93 -0.42 0.28 16
37 H 0.11 0.97 7.51 -51.94 -0.39 0.58 16
38 H 0.40 3.83 8.29 -40.82 -0.34 3.49 16
39 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
40 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16
41 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16
42 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16
43 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16
44 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16
45 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16
46 H 0.14 0.66 8.06 -52.49 -0.42 0.24 16
47 H 0.14 0.42 8.06 -52.49 -0.42 0.00 16
48 H 0.16 0.66 8.06 -52.49 -0.42 0.23 16
49 H 0.15 1.28 6.43 -52.48 -0.34 0.95 16
LS Contribution 408.95 15.07 6.16 6.16
Total: -1.00 -35.14 408.95 -9.24 -44.38
By element:
Atomic # 1 Polarization: 7.95 SS G_CDS: -7.70 Total: 0.25 kcal
Atomic # 6 Polarization: -2.00 SS G_CDS: -2.81 Total: -4.80 kcal
Atomic # 7 Polarization: -45.79 SS G_CDS: -0.06 Total: -45.85 kcal
Atomic # 8 Polarization: -16.56 SS G_CDS: 0.18 Total: -16.37 kcal
Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal
Total LS contribution 6.16 Total: 6.16 kcal
Total: -35.14 -9.24 -44.38 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001360151462.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -2.376 kcal
(2) G-P(sol) polarization free energy of solvation -35.141 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.517 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.238 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.378 kcal
(6) G-S(sol) free energy of system = (1) + (5) -46.755 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds