Wall clock time and date at job start Wed Apr 1 2020 03:05:03
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53007 * 1
3 3 N 1.46505 * 109.46664 * 2 1
4 4 C 1.34419 * 124.34751 * 90.02498 * 3 2 1
5 5 O 1.21280 * 124.94442 * 0.46207 * 4 3 2
6 6 C 1.51279 * 110.11675 * 180.42638 * 4 3 2
7 7 C 1.54636 * 104.19286 * 16.24946 * 6 4 3
8 8 H 1.08998 * 110.96670 * 217.04928 * 7 6 4
9 9 C 1.50703 * 110.96703 * 93.32266 * 7 6 4
10 10 O 1.21273 * 119.99963 * 241.45403 * 9 7 6
11 11 N 1.34779 * 119.99944 * 61.45242 * 9 7 6
12 12 C 1.46499 * 119.99872 * 179.97438 * 11 9 7
13 13 C 1.53000 * 109.46840 * 179.97438 * 12 11 9
14 14 C 1.52997 * 109.47060 * 180.02562 * 13 12 11
15 15 C 1.50697 * 109.47466 * 180.02562 * 14 13 12
16 16 H 1.08001 * 119.99890 * 0.02562 * 15 14 13
17 17 C 1.37876 * 120.00428 * 179.97438 * 15 14 13
18 18 N 1.31519 * 119.99563 * 0.02562 * 17 15 14
19 19 Si 1.86800 * 120.00432 * 179.97438 * 17 15 14
20 20 H 1.48506 * 109.46838 * 89.99826 * 19 17 15
21 21 H 1.48497 * 109.47419 * 209.99978 * 19 17 15
22 22 H 1.48499 * 109.47011 * 330.00539 * 19 17 15
23 23 C 1.46753 * 124.34997 * 270.04208 * 3 2 1
24 24 H 1.09006 * 110.24654 * 43.96723 * 23 3 2
25 25 C 1.50702 * 110.24992 * 281.96858 * 23 3 2
26 26 C 1.38672 * 120.41761 * 143.67080 * 25 23 3
27 27 C 1.38628 * 118.41937 * 179.78449 * 26 25 23
28 28 C 1.38231 * 119.16078 * 0.46843 * 27 26 25
29 29 N 1.31855 * 120.76140 * 359.77391 * 28 27 26
30 30 C 1.31889 * 121.72539 * 359.97438 * 29 28 27
31 31 H 1.09000 * 109.46970 * 60.00679 * 1 2 3
32 32 H 1.09002 * 109.46841 * 179.97438 * 1 2 3
33 33 H 1.08996 * 109.47026 * 299.99751 * 1 2 3
34 34 H 1.08996 * 109.47026 * 240.00249 * 2 1 3
35 35 H 1.09006 * 109.46714 * 119.99999 * 2 1 3
36 36 H 1.09001 * 110.48349 * 257.57657 * 6 4 3
37 37 H 1.08989 * 110.60294 * 134.98547 * 6 4 3
38 38 H 0.97005 * 119.99680 * 359.97438 * 11 9 7
39 39 H 1.09001 * 109.46813 * 60.00258 * 12 11 9
40 40 H 1.08992 * 109.47397 * 300.00319 * 12 11 9
41 41 H 1.09002 * 109.47398 * 300.00326 * 13 12 11
42 42 H 1.09001 * 109.47194 * 60.00507 * 13 12 11
43 43 H 1.09002 * 109.47153 * 300.00319 * 14 13 12
44 44 H 1.08998 * 109.47533 * 59.99948 * 14 13 12
45 45 H 0.97002 * 119.99731 * 180.02562 * 18 17 15
46 46 H 1.08002 * 120.79560 * 0.02637 * 26 25 23
47 47 H 1.07994 * 120.42343 * 180.26975 * 27 26 25
48 48 H 1.07992 * 119.61984 * 179.79031 * 28 27 26
49 49 H 1.08004 * 119.61867 * 180.02562 * 30 29 28
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.2715 2.0962 1.1098
5 8 2.1366 1.6890 2.2442
6 6 2.7501 3.4823 0.7379
7 6 2.3517 3.6349 -0.7484
8 1 3.1109 4.1884 -1.3008
9 6 1.0036 4.2955 -0.8803
10 8 0.0870 3.7028 -1.4088
11 7 0.8167 5.5450 -0.4109
12 6 -0.4936 6.1874 -0.5396
13 6 -0.4361 7.5898 0.0694
14 6 -1.8046 8.2605 -0.0644
15 6 -1.7479 9.6420 0.5349
16 1 -0.8275 10.0055 0.9676
17 6 -2.8705 10.4424 0.5299
18 7 -3.9911 9.9999 0.0026
19 14 -2.8003 12.1546 1.2735
20 1 -2.4027 13.1321 0.2285
21 1 -4.1375 12.5176 1.8077
22 1 -1.8047 12.1755 2.3751
23 6 2.2934 2.1623 -1.2116
24 1 1.4919 2.0268 -1.9379
25 6 3.6145 1.7508 -1.8087
26 6 3.7814 1.7122 -3.1848
27 6 5.0154 1.3320 -3.6893
28 6 6.0282 0.9970 -2.8103
29 7 5.8320 1.0403 -1.5071
30 6 4.6730 1.4020 -0.9919
31 1 -0.3633 0.5137 -0.8901
32 1 -0.3633 -1.0277 -0.0005
33 1 -0.3633 0.5138 0.8900
34 1 1.8934 -0.5138 -0.8900
35 1 1.8933 -0.5139 0.8901
36 1 3.8315 3.5559 0.8525
37 1 2.2507 4.2364 1.3461
38 1 1.5498 6.0189 0.0122
39 1 -1.2423 5.5941 -0.0146
40 1 -0.7610 6.2594 -1.5938
41 1 -0.1688 7.5174 1.1237
42 1 0.3126 8.1833 -0.4552
43 1 -2.0723 8.3329 -1.1186
44 1 -2.5531 7.6669 0.4605
45 1 -4.7809 10.5632 -0.0013
46 1 2.9706 1.9758 -3.8478
47 1 5.1824 1.2950 -4.7556
48 1 6.9914 0.6965 -3.1952
49 1 4.5499 1.4259 0.0808
RHF calculation, no. of doubly occupied orbitals= 65
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001360151462.mol2 49
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 03:05:03
Heat of formation + Delta-G solvation = -69.563260 kcal
Electronic energy + Delta-G solvation = -30085.524796 eV
Core-core repulsion = 26010.973005 eV
Total energy + Delta-G solvation = -4074.551791 eV
No. of doubly occupied orbitals = 65
Molecular weight
(most abundant/longest-lived isotopes) = 345.184 amu
Computer time = 1.05 seconds
Orbital eigenvalues (eV)
-42.56949 -40.79929 -40.25097 -37.79431 -36.91443 -35.32687 -35.03767 -33.62938
-33.02084 -32.20881 -30.85365 -28.74613 -28.39497 -25.84418 -24.52444 -24.46701
-24.22970 -22.78588 -22.31615 -21.13031 -20.41657 -18.86652 -18.51608 -18.15989
-17.77749 -17.29006 -17.01414 -16.72316 -16.60163 -16.43077 -16.26316 -15.64444
-15.44474 -15.19530 -14.99631 -14.75379 -14.59704 -14.41362 -14.23921 -13.96218
-13.81523 -13.78314 -13.60301 -13.33974 -13.14529 -12.92633 -12.83158 -12.73847
-12.55545 -12.52926 -12.37164 -12.11991 -11.66776 -11.58578 -11.24391 -11.01976
-10.92311 -10.71925 -10.55286 -10.50526 -10.12337 -10.05554 -9.83856 -8.19716
-6.30877 0.06958 0.32696 1.39159 1.41813 1.43003 1.50741 1.53870
1.83397 2.09670 2.42244 2.77641 3.14296 3.16785 3.20179 3.35167
3.59735 3.68592 3.83655 3.97538 4.02520 4.04796 4.13102 4.17556
4.21203 4.23023 4.29377 4.41192 4.53132 4.55833 4.57756 4.65995
4.69655 4.73265 4.83400 4.86373 4.95149 4.99520 5.17729 5.18370
5.20198 5.23875 5.41036 5.50171 5.52948 5.71310 5.74175 5.84631
5.97354 6.22262 6.51053 6.86997 6.99172 7.01467 7.17620 7.38826
8.92290
Molecular weight = 345.18amu
Principal moments of inertia in cm(-1)
A = 0.015679 B = 0.002121 C = 0.002027
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1785.373512 B =13196.042716 C =13811.613973
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.163 4.163
2 C 0.123 3.877
3 N -0.606 5.606
4 C 0.507 3.493
5 O -0.571 6.571
6 C -0.145 4.145
7 C -0.103 4.103
8 H 0.163 0.837
9 C 0.516 3.484
10 O -0.572 6.572
11 N -0.710 5.710
12 C 0.131 3.869
13 C -0.103 4.103
14 C 0.023 3.977
15 C -0.540 4.540
16 H 0.067 0.933
17 C -0.004 4.004
18 N -0.935 5.935
19 Si 0.966 3.034
20 H -0.271 1.271
21 H -0.286 1.286
22 H -0.261 1.261
23 C 0.197 3.803
24 H 0.112 0.888
25 C -0.150 4.150
26 C -0.060 4.060
27 C -0.161 4.161
28 C 0.092 3.908
29 N -0.512 5.512
30 C 0.108 3.892
31 H 0.055 0.945
32 H 0.087 0.913
33 H 0.031 0.969
34 H 0.099 0.901
35 H 0.077 0.923
36 H 0.147 0.853
37 H 0.114 0.886
38 H 0.417 0.583
39 H 0.044 0.956
40 H 0.055 0.945
41 H 0.065 0.935
42 H 0.072 0.928
43 H -0.006 1.006
44 H -0.011 1.011
45 H 0.263 0.737
46 H 0.156 0.844
47 H 0.167 0.833
48 H 0.178 0.822
49 H 0.140 0.860
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 22.376 -19.941 -8.395 31.126
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.221 4.221
2 C 0.002 3.998
3 N -0.338 5.338
4 C 0.296 3.704
5 O -0.450 6.450
6 C -0.185 4.185
7 C -0.124 4.124
8 H 0.180 0.820
9 C 0.302 3.698
10 O -0.452 6.452
11 N -0.362 5.362
12 C 0.007 3.993
13 C -0.141 4.141
14 C -0.015 4.015
15 C -0.578 4.578
16 H 0.085 0.915
17 C -0.202 4.202
18 N -0.576 5.576
19 Si 0.790 3.210
20 H -0.197 1.197
21 H -0.212 1.212
22 H -0.185 1.185
23 C 0.092 3.908
24 H 0.130 0.870
25 C -0.153 4.153
26 C -0.086 4.086
27 C -0.181 4.181
28 C -0.065 4.065
29 N -0.221 5.221
30 C -0.049 4.049
31 H 0.074 0.926
32 H 0.106 0.894
33 H 0.050 0.950
34 H 0.117 0.883
35 H 0.095 0.905
36 H 0.165 0.835
37 H 0.132 0.868
38 H 0.254 0.746
39 H 0.063 0.937
40 H 0.074 0.926
41 H 0.084 0.916
42 H 0.091 0.909
43 H 0.012 0.988
44 H 0.007 0.993
45 H 0.071 0.929
46 H 0.173 0.827
47 H 0.184 0.816
48 H 0.195 0.805
49 H 0.157 0.843
Dipole moment (debyes) X Y Z Total
from point charges 22.125 -20.838 -7.635 31.337
hybrid contribution -1.280 1.256 0.108 1.797
sum 20.845 -19.581 -7.527 29.574
Atomic orbital electron populations
1.22082 0.95738 1.02977 1.01281 1.21439 0.94261 0.80400 1.03746
1.48426 1.64370 1.14471 1.06489 1.21336 0.76075 0.88838 0.84112
1.90721 1.55222 1.76486 1.22592 1.22524 1.06351 0.94901 0.94693
1.22327 0.95828 0.95821 0.98428 0.81957 1.20658 0.90179 0.81435
0.77485 1.90703 1.44893 1.64407 1.45166 1.45921 1.14208 1.15639
1.60449 1.21219 0.84268 0.93424 1.00352 1.21600 0.98865 0.92977
1.00613 1.18943 0.92666 0.94582 0.95274 1.21686 0.97091 1.00656
1.38319 0.91508 1.26021 0.95145 1.03050 0.95961 1.70112 1.02014
1.38764 1.46663 0.85433 0.77496 0.79110 0.78922 1.19693 1.21209
1.18491 1.20238 0.94827 0.88350 0.87423 0.87015 1.20833 0.95762
1.03541 0.95173 1.21772 0.98645 0.94331 0.93862 1.22481 0.93141
0.99466 1.02994 1.23321 1.00561 0.94473 0.88115 1.67745 1.23833
1.14231 1.16286 1.22448 0.87944 0.94461 1.00040 0.92624 0.89444
0.94994 0.88260 0.90494 0.83484 0.86772 0.74566 0.93717 0.92627
0.91607 0.90941 0.98801 0.99259 0.92857 0.82671 0.81581 0.80520
0.84308
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.16 -3.20 10.24 71.98 0.74 -2.47 16
2 C 0.12 2.18 6.65 86.38 0.57 2.76 16
3 N -0.61 -11.76 2.03 -798.30 -1.62 -13.38 16
4 C 0.51 11.82 6.92 87.90 0.61 12.43 16
5 O -0.57 -18.31 17.59 -3.03 -0.05 -18.37 16
6 C -0.14 -2.18 5.91 30.59 0.18 -2.00 16
7 C -0.10 -1.48 3.05 -10.48 -0.03 -1.51 16
8 H 0.16 1.25 7.89 -2.39 -0.02 1.24 16
9 C 0.52 12.04 7.16 87.66 0.63 12.67 16
10 O -0.57 -18.15 15.51 -3.01 -0.05 -18.19 16
11 N -0.71 -16.54 5.28 -463.07 -2.45 -18.99 16
12 C 0.13 4.27 5.67 86.38 0.49 4.76 16
13 C -0.10 -3.74 5.27 30.59 0.16 -3.58 16
14 C 0.02 1.17 4.97 29.85 0.15 1.32 16
15 C -0.54 -29.61 9.11 25.60 0.23 -29.38 16
16 H 0.07 3.43 7.74 -2.91 -0.02 3.41 16
17 C 0.00 -0.24 5.46 84.65 0.46 0.23 16
18 N -0.94 -56.71 13.29 21.45 0.28 -56.43 16
19 Si 0.97 43.41 29.54 68.60 2.03 45.43 16
20 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16
21 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16
22 H -0.26 -11.08 7.11 99.48 0.71 -10.37 16
23 C 0.20 3.04 2.74 44.70 0.12 3.16 16
24 H 0.11 1.98 6.87 -2.38 -0.02 1.97 16
25 C -0.15 -1.88 4.91 -19.78 -0.10 -1.98 16
26 C -0.06 -0.56 9.85 22.47 0.22 -0.33 16
27 C -0.16 -1.21 10.11 22.36 0.23 -0.98 16
28 C 0.09 0.98 11.18 84.69 0.95 1.93 16
29 N -0.51 -8.42 10.36 -195.85 -2.03 -10.45 16
30 C 0.11 1.65 10.22 84.67 0.87 2.52 16
31 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16
32 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16
33 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16
34 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16
35 H 0.08 1.48 7.92 -2.38 -0.02 1.46 16
36 H 0.15 1.36 8.06 -2.39 -0.02 1.34 16
37 H 0.11 1.75 7.51 -2.39 -0.02 1.73 16
38 H 0.42 6.87 8.29 -92.70 -0.77 6.10 16
39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16
40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16
41 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16
42 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16
43 H -0.01 -0.35 8.14 -2.39 -0.02 -0.37 16
44 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16
45 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16
46 H 0.16 0.95 8.06 -2.91 -0.02 0.92 16
47 H 0.17 0.28 8.06 -2.91 -0.02 0.26 16
48 H 0.18 0.96 8.06 -2.91 -0.02 0.94 16
49 H 0.14 2.29 6.43 -2.91 -0.02 2.27 16
Total: -1.00 -79.52 408.95 2.78 -76.74
By element:
Atomic # 1 Polarization: 13.90 SS G_CDS: 0.18 Total: 14.08 kcal
Atomic # 6 Polarization: -6.93 SS G_CDS: 6.48 Total: -0.46 kcal
Atomic # 7 Polarization: -93.43 SS G_CDS: -5.81 Total: -99.24 kcal
Atomic # 8 Polarization: -36.46 SS G_CDS: -0.10 Total: -36.56 kcal
Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.43 kcal
Total: -79.52 2.78 -76.74 kcal
The number of atoms in the molecule is 49
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001360151462.mol2 49
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 7.176 kcal
(2) G-P(sol) polarization free energy of solvation -79.518 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.341 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.778 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.740 kcal
(6) G-S(sol) free energy of system = (1) + (5) -69.563 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.05 seconds