Wall clock time and date at job start Wed Apr 1 2020 05:45:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21290 * 120.00309 * 2 1 4 4 N 1.34779 * 120.00300 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63144 * 174.23468 * 4 2 1 6 6 C 1.53198 * 108.88751 * 126.34753 * 5 4 2 7 7 C 1.53343 * 109.14930 * 54.58038 * 6 5 4 8 8 C 1.53002 * 109.41744 * 178.67120 * 7 6 5 9 9 N 1.46497 * 109.47186 * 295.12752 * 8 7 6 10 10 C 1.34782 * 119.99890 * 179.97438 * 9 8 7 11 11 O 1.21587 * 119.99726 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00167 * 180.02562 * 10 9 8 13 13 C 1.39948 * 120.00169 * 184.67429 * 12 10 9 14 14 C 1.39293 * 119.94943 * 144.91845 * 13 12 10 15 15 C 1.38487 * 120.42870 * 180.02562 * 14 13 12 16 16 C 1.37681 * 120.32151 * 359.97438 * 15 14 13 17 17 C 1.40742 * 119.88634 * 359.97438 * 16 15 14 18 18 C 1.41404 * 120.21160 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00500 * 214.62985 * 18 17 16 20 20 C 1.39942 * 119.99954 * 34.63735 * 18 17 16 21 21 N 1.30826 * 119.99641 * 5.25672 * 20 18 17 22 22 Si 1.86797 * 119.99968 * 185.25485 * 20 18 17 23 23 H 1.48503 * 109.46802 * 90.00312 * 22 20 18 24 24 H 1.48506 * 109.46950 * 210.00005 * 22 20 18 25 25 H 1.48496 * 109.47171 * 329.99972 * 22 20 18 26 26 C 1.38243 * 119.94455 * 324.64213 * 13 12 10 27 27 C 1.53038 * 109.60801 * 298.71223 * 7 6 5 28 28 C 1.46926 * 120.62788 * 354.26709 * 4 2 1 29 29 H 1.09000 * 109.47260 * 184.84864 * 1 2 3 30 30 H 1.09001 * 109.46948 * 304.84278 * 1 2 3 31 31 H 1.09000 * 109.47488 * 64.84598 * 1 2 3 32 32 H 1.08996 * 109.59213 * 246.20563 * 5 4 2 33 33 H 1.08996 * 109.59013 * 6.49640 * 5 4 2 34 34 H 1.09004 * 109.49808 * 174.66080 * 6 5 4 35 35 H 1.09001 * 109.49827 * 294.75055 * 6 5 4 36 36 H 1.09002 * 109.42360 * 58.75039 * 7 6 5 37 37 H 1.09001 * 109.47011 * 55.13103 * 8 7 6 38 38 H 1.09009 * 109.46783 * 175.12695 * 8 7 6 39 39 H 0.96995 * 120.00133 * 359.97438 * 9 8 7 40 40 H 0.97001 * 119.99567 * 4.66555 * 12 10 9 41 41 H 1.07991 * 119.78307 * 359.97438 * 14 13 12 42 42 H 1.07999 * 119.84022 * 179.97438 * 15 14 13 43 43 H 1.08004 * 120.05779 * 179.97438 * 16 15 14 44 44 H 0.97000 * 119.99873 * 179.97438 * 21 20 18 45 45 H 1.07998 * 120.15902 * 0.02562 * 26 13 12 46 46 H 1.09006 * 109.49586 * 301.42050 * 27 7 6 47 47 H 1.09006 * 109.52380 * 181.34758 * 27 7 6 48 48 H 1.08998 * 109.58792 * 353.37254 * 28 4 2 49 49 H 1.09006 * 109.58294 * 113.65076 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6445 -1.1866 -0.1265 6 6 4.2326 -1.9918 1.0366 7 6 3.5828 -3.3805 1.0662 8 6 4.1898 -4.2019 2.2055 9 7 5.6093 -4.4403 1.9331 10 6 6.3536 -5.1470 2.8067 11 8 5.8468 -5.5870 3.8205 12 7 7.6597 -5.3660 2.5565 13 6 8.4091 -6.1811 3.4124 14 6 9.4152 -6.9936 2.8948 15 6 10.1625 -7.8045 3.7326 16 6 9.9191 -7.8157 5.0877 17 6 8.9066 -6.9992 5.6252 18 6 8.6505 -7.0058 7.0158 19 1 7.6412 -6.8822 7.3796 20 6 9.7049 -7.1723 7.9207 21 7 10.9382 -7.2187 7.4866 22 14 9.3514 -7.3282 9.7483 23 1 9.1569 -8.7591 10.0945 24 1 10.4957 -6.7828 10.5220 25 1 8.1209 -6.5666 10.0812 26 6 8.1536 -6.1742 4.7710 27 6 2.0753 -3.2375 1.2875 28 6 1.4658 -2.4444 0.1274 29 1 -0.3634 -1.0240 0.0869 30 1 -0.3633 0.5871 0.8434 31 1 -0.3634 0.4368 -0.9302 32 1 3.9232 -1.6527 -1.0715 33 1 4.0276 -0.1666 -0.0951 34 1 5.3094 -2.0931 0.9012 35 1 4.0305 -1.4759 1.9752 36 1 3.7642 -3.8859 0.1176 37 1 4.0864 -3.6550 3.1427 38 1 3.6692 -5.1565 2.2825 39 1 6.0135 -4.0896 1.1242 40 1 8.0802 -4.9587 1.7830 41 1 9.6131 -6.9919 1.8331 42 1 10.9399 -8.4310 3.3210 43 1 10.5043 -8.4500 5.7371 44 1 11.6691 -7.3337 8.1138 45 1 7.3765 -5.5415 5.1737 46 1 1.8935 -2.7101 2.2240 47 1 1.6183 -4.2261 1.3323 48 1 0.4115 -2.2545 0.3285 49 1 1.5647 -3.0120 -0.7980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365201277.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:49 Heat of formation + Delta-G solvation = -44.798465 kcal Electronic energy + Delta-G solvation = -29214.004544 eV Core-core repulsion = 25140.526635 eV Total energy + Delta-G solvation = -4073.477909 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.66104 -39.90323 -38.20832 -37.23965 -35.26643 -34.30464 -33.13452 -32.66493 -32.02146 -29.86562 -29.73726 -28.36301 -26.93595 -25.20939 -23.78803 -23.58327 -21.60665 -21.03979 -20.80324 -20.08139 -19.37040 -18.03562 -17.67723 -17.34889 -16.32629 -16.04734 -15.82183 -15.49909 -15.21377 -14.82451 -14.64721 -14.47657 -14.32535 -14.13302 -13.94027 -13.74992 -13.36845 -13.29980 -13.02450 -12.81724 -12.58683 -12.44313 -12.29948 -12.09850 -11.69045 -11.60171 -11.30572 -11.12474 -11.11451 -11.08763 -10.91624 -10.84847 -10.40737 -10.21799 -10.15109 -9.62781 -9.37888 -9.16094 -9.09905 -8.90892 -8.89968 -7.31584 -6.84861 -6.55783 -4.29600 2.22632 2.56732 2.76535 2.90581 3.05571 3.14988 3.19176 3.25495 3.72186 4.05222 4.09034 4.17085 4.27877 4.38136 4.52516 4.64720 4.66463 4.77148 4.81987 4.87337 4.94821 5.04734 5.14771 5.25278 5.30351 5.41588 5.41643 5.53001 5.61734 5.67882 5.71371 5.77470 5.98251 6.08150 6.25715 6.40509 6.55956 6.80760 6.82539 6.96490 7.08727 7.17483 7.29839 7.39119 7.74914 7.76455 7.85292 8.01421 8.19333 8.30501 8.46488 8.74487 8.95784 9.04914 9.07715 10.38319 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.001848 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.542336 B =15151.433040 C =15956.732403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.512 3.488 3 O -0.549 6.549 4 N -0.613 5.613 5 C 0.110 3.890 6 C -0.130 4.130 7 C -0.098 4.098 8 C 0.146 3.854 9 N -0.751 5.751 10 C 0.697 3.303 11 O -0.566 6.566 12 N -0.681 5.681 13 C 0.159 3.841 14 C -0.252 4.252 15 C -0.098 4.098 16 C -0.159 4.159 17 C 0.118 3.882 18 C -0.464 4.464 19 H 0.076 0.924 20 C 0.072 3.928 21 N -0.813 5.813 22 Si 0.912 3.088 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.264 1.264 26 C -0.198 4.198 27 C -0.129 4.129 28 C 0.103 3.897 29 H 0.083 0.917 30 H 0.094 0.906 31 H 0.095 0.905 32 H 0.067 0.933 33 H 0.093 0.907 34 H 0.078 0.922 35 H 0.071 0.929 36 H 0.080 0.920 37 H 0.066 0.934 38 H 0.067 0.933 39 H 0.391 0.609 40 H 0.393 0.607 41 H 0.089 0.911 42 H 0.092 0.908 43 H 0.117 0.883 44 H 0.277 0.723 45 H 0.114 0.886 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.094 0.906 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.282 8.977 -16.906 25.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C 0.301 3.699 3 O -0.426 6.426 4 N -0.348 5.348 5 C -0.013 4.013 6 C -0.168 4.168 7 C -0.117 4.117 8 C 0.021 3.979 9 N -0.409 5.409 10 C 0.398 3.602 11 O -0.441 6.441 12 N -0.327 5.327 13 C 0.067 3.933 14 C -0.274 4.274 15 C -0.117 4.117 16 C -0.179 4.179 17 C 0.115 3.885 18 C -0.495 4.495 19 H 0.094 0.906 20 C -0.143 4.143 21 N -0.440 5.440 22 Si 0.737 3.263 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.188 1.188 26 C -0.220 4.220 27 C -0.167 4.167 28 C -0.020 4.020 29 H 0.102 0.898 30 H 0.113 0.887 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.111 0.889 34 H 0.096 0.904 35 H 0.090 0.910 36 H 0.098 0.902 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.225 0.775 40 H 0.227 0.773 41 H 0.107 0.893 42 H 0.110 0.890 43 H 0.135 0.865 44 H 0.088 0.912 45 H 0.132 0.868 46 H 0.092 0.908 47 H 0.102 0.898 48 H 0.112 0.888 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.246 9.122 -15.871 25.150 hybrid contribution 0.437 0.228 0.001 0.493 sum -16.809 9.350 -15.870 24.936 Atomic orbital electron populations 1.22044 0.91870 1.04650 1.05377 1.20831 0.90674 0.83062 0.75288 1.90726 1.70657 1.31130 1.50135 1.48202 1.07543 1.06257 1.72800 1.21612 0.79260 1.02341 0.98061 1.22052 1.00309 0.95129 0.99344 1.21447 0.95160 0.95824 0.99318 1.21148 0.79869 0.99384 0.97489 1.45115 1.10581 1.59948 1.25238 1.15980 0.81312 0.79463 0.83494 1.90972 1.71789 1.54785 1.26585 1.42538 1.08091 1.52042 1.30056 1.17274 0.93604 0.93327 0.89111 1.20075 1.04260 1.05695 0.97356 1.20476 0.98390 0.98578 0.94259 1.21363 1.01957 1.01580 0.92964 1.17546 0.89888 0.88015 0.93005 1.19516 0.94817 1.44448 0.90673 0.90551 1.25839 0.94596 0.92560 1.01284 1.69779 0.99495 1.37919 1.36780 0.86259 0.78919 0.79254 0.81898 1.19501 1.20437 1.18757 1.21301 1.05631 1.04278 0.90786 1.21900 0.94757 1.01117 0.98960 1.21912 0.96924 0.84130 0.98993 0.89808 0.88740 0.88684 0.91427 0.88903 0.90375 0.90987 0.90186 0.91603 0.91509 0.77528 0.77328 0.89311 0.88992 0.86462 0.91236 0.86798 0.90789 0.89831 0.88829 0.90995 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.83 10.11 36.00 0.36 -0.47 16 2 C 0.51 4.49 7.79 -10.99 -0.09 4.41 16 3 O -0.55 -7.33 16.52 5.55 0.09 -7.24 16 4 N -0.61 -4.29 2.97 -172.77 -0.51 -4.80 16 5 C 0.11 0.79 6.43 -3.71 -0.02 0.77 16 6 C -0.13 -0.92 5.27 -26.45 -0.14 -1.06 16 7 C -0.10 -0.63 2.19 -90.42 -0.20 -0.83 16 8 C 0.15 1.48 5.06 -4.04 -0.02 1.46 16 9 N -0.75 -8.86 5.28 -65.22 -0.34 -9.20 16 10 C 0.70 12.39 8.40 -86.92 -0.73 11.66 16 11 O -0.57 -12.89 13.78 5.29 0.07 -12.82 16 12 N -0.68 -12.06 5.34 -14.27 -0.08 -12.14 16 13 C 0.16 3.62 6.29 -83.76 -0.53 3.10 16 14 C -0.25 -5.54 9.97 -39.10 -0.39 -5.93 16 15 C -0.10 -2.29 10.02 -39.69 -0.40 -2.69 16 16 C -0.16 -4.21 8.62 -38.84 -0.33 -4.55 16 17 C 0.12 3.31 5.50 -106.85 -0.59 2.72 16 18 C -0.46 -13.02 9.04 -37.74 -0.34 -13.36 16 19 H 0.08 2.12 7.85 -52.49 -0.41 1.71 16 20 C 0.07 1.90 5.31 -17.34 -0.09 1.80 16 21 N -0.81 -21.78 10.97 55.55 0.61 -21.17 16 22 Si 0.91 19.75 29.56 -169.99 -5.03 14.73 16 23 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.48 16 25 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 26 C -0.20 -5.23 8.43 -38.68 -0.33 -5.56 16 27 C -0.13 -0.66 5.36 -26.62 -0.14 -0.80 16 28 C 0.10 0.43 6.30 -3.71 -0.02 0.40 16 29 H 0.08 0.19 5.15 -51.93 -0.27 -0.08 16 30 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.09 0.85 7.00 -51.93 -0.36 0.49 16 34 H 0.08 0.52 7.16 -51.93 -0.37 0.15 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 39 H 0.39 3.32 7.67 -40.82 -0.31 3.01 16 40 H 0.39 5.30 8.84 -40.82 -0.36 4.94 16 41 H 0.09 1.66 8.06 -52.49 -0.42 1.24 16 42 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 43 H 0.12 3.20 6.48 -52.48 -0.34 2.86 16 44 H 0.28 6.79 8.30 -40.82 -0.34 6.45 16 45 H 0.11 3.14 6.22 -52.49 -0.33 2.81 16 46 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 47 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 48 H 0.09 0.22 5.14 -51.93 -0.27 -0.05 16 49 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 LS Contribution 393.20 15.07 5.93 5.93 Total: -1.00 -35.66 393.20 -10.49 -46.15 By element: Atomic # 1 Polarization: 16.72 SS G_CDS: -7.23 Total: 9.49 kcal Atomic # 6 Polarization: -4.92 SS G_CDS: -4.00 Total: -8.91 kcal Atomic # 7 Polarization: -47.00 SS G_CDS: -0.32 Total: -47.32 kcal Atomic # 8 Polarization: -20.22 SS G_CDS: 0.16 Total: -20.06 kcal Atomic # 14 Polarization: 19.75 SS G_CDS: -5.03 Total: 14.73 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -35.66 -10.49 -46.15 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365201277.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.349 kcal (2) G-P(sol) polarization free energy of solvation -35.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.147 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds