Wall clock time and date at job start Wed Apr 1 2020 05:45:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 O 1.21290 * 120.00309 * 2 1 4 4 N 1.34779 * 120.00300 * 179.97438 * 2 1 3 5 5 C 1.46923 * 120.63144 * 174.23468 * 4 2 1 6 6 C 1.53198 * 108.88751 * 126.34753 * 5 4 2 7 7 C 1.53343 * 109.14930 * 54.58038 * 6 5 4 8 8 C 1.53002 * 109.41744 * 178.67120 * 7 6 5 9 9 N 1.46497 * 109.47186 * 295.12752 * 8 7 6 10 10 C 1.34782 * 119.99890 * 179.97438 * 9 8 7 11 11 O 1.21587 * 119.99726 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00167 * 180.02562 * 10 9 8 13 13 C 1.39948 * 120.00169 * 184.67429 * 12 10 9 14 14 C 1.39293 * 119.94943 * 144.91845 * 13 12 10 15 15 C 1.38487 * 120.42870 * 180.02562 * 14 13 12 16 16 C 1.37681 * 120.32151 * 359.97438 * 15 14 13 17 17 C 1.40742 * 119.88634 * 359.97438 * 16 15 14 18 18 C 1.41404 * 120.21160 * 179.97438 * 17 16 15 19 19 H 1.07993 * 120.00500 * 214.62985 * 18 17 16 20 20 C 1.39942 * 119.99954 * 34.63735 * 18 17 16 21 21 N 1.30826 * 119.99641 * 5.25672 * 20 18 17 22 22 Si 1.86797 * 119.99968 * 185.25485 * 20 18 17 23 23 H 1.48503 * 109.46802 * 90.00312 * 22 20 18 24 24 H 1.48506 * 109.46950 * 210.00005 * 22 20 18 25 25 H 1.48496 * 109.47171 * 329.99972 * 22 20 18 26 26 C 1.38243 * 119.94455 * 324.64213 * 13 12 10 27 27 C 1.53038 * 109.60801 * 298.71223 * 7 6 5 28 28 C 1.46926 * 120.62788 * 354.26709 * 4 2 1 29 29 H 1.09000 * 109.47260 * 184.84864 * 1 2 3 30 30 H 1.09001 * 109.46948 * 304.84278 * 1 2 3 31 31 H 1.09000 * 109.47488 * 64.84598 * 1 2 3 32 32 H 1.08996 * 109.59213 * 246.20563 * 5 4 2 33 33 H 1.08996 * 109.59013 * 6.49640 * 5 4 2 34 34 H 1.09004 * 109.49808 * 174.66080 * 6 5 4 35 35 H 1.09001 * 109.49827 * 294.75055 * 6 5 4 36 36 H 1.09002 * 109.42360 * 58.75039 * 7 6 5 37 37 H 1.09001 * 109.47011 * 55.13103 * 8 7 6 38 38 H 1.09009 * 109.46783 * 175.12695 * 8 7 6 39 39 H 0.96995 * 120.00133 * 359.97438 * 9 8 7 40 40 H 0.97001 * 119.99567 * 4.66555 * 12 10 9 41 41 H 1.07991 * 119.78307 * 359.97438 * 14 13 12 42 42 H 1.07999 * 119.84022 * 179.97438 * 15 14 13 43 43 H 1.08004 * 120.05779 * 179.97438 * 16 15 14 44 44 H 0.97000 * 119.99873 * 179.97438 * 21 20 18 45 45 H 1.07998 * 120.15902 * 0.02562 * 26 13 12 46 46 H 1.09006 * 109.49586 * 301.42050 * 27 7 6 47 47 H 1.09006 * 109.52380 * 181.34758 * 27 7 6 48 48 H 1.08998 * 109.58792 * 353.37254 * 28 4 2 49 49 H 1.09006 * 109.58294 * 113.65076 * 28 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 8 2.1135 1.0504 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6445 -1.1866 -0.1265 6 6 4.2326 -1.9918 1.0366 7 6 3.5828 -3.3805 1.0662 8 6 4.1898 -4.2019 2.2055 9 7 5.6093 -4.4403 1.9331 10 6 6.3536 -5.1470 2.8067 11 8 5.8468 -5.5870 3.8205 12 7 7.6597 -5.3660 2.5565 13 6 8.4091 -6.1811 3.4124 14 6 9.4152 -6.9936 2.8948 15 6 10.1625 -7.8045 3.7326 16 6 9.9191 -7.8157 5.0877 17 6 8.9066 -6.9992 5.6252 18 6 8.6505 -7.0058 7.0158 19 1 7.6412 -6.8822 7.3796 20 6 9.7049 -7.1723 7.9207 21 7 10.9382 -7.2187 7.4866 22 14 9.3514 -7.3282 9.7483 23 1 9.1569 -8.7591 10.0945 24 1 10.4957 -6.7828 10.5220 25 1 8.1209 -6.5666 10.0812 26 6 8.1536 -6.1742 4.7710 27 6 2.0753 -3.2375 1.2875 28 6 1.4658 -2.4444 0.1274 29 1 -0.3634 -1.0240 0.0869 30 1 -0.3633 0.5871 0.8434 31 1 -0.3634 0.4368 -0.9302 32 1 3.9232 -1.6527 -1.0715 33 1 4.0276 -0.1666 -0.0951 34 1 5.3094 -2.0931 0.9012 35 1 4.0305 -1.4759 1.9752 36 1 3.7642 -3.8859 0.1176 37 1 4.0864 -3.6550 3.1427 38 1 3.6692 -5.1565 2.2825 39 1 6.0135 -4.0896 1.1242 40 1 8.0802 -4.9587 1.7830 41 1 9.6131 -6.9919 1.8331 42 1 10.9399 -8.4310 3.3210 43 1 10.5043 -8.4500 5.7371 44 1 11.6691 -7.3337 8.1138 45 1 7.3765 -5.5415 5.1737 46 1 1.8935 -2.7101 2.2240 47 1 1.6183 -4.2261 1.3323 48 1 0.4115 -2.2545 0.3285 49 1 1.5647 -3.0120 -0.7980 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365201277.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:45:48 Heat of formation + Delta-G solvation = -69.210256 kcal Electronic energy + Delta-G solvation = -29215.063119 eV Core-core repulsion = 25140.526635 eV Total energy + Delta-G solvation = -4074.536483 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.53497 -41.09838 -39.33146 -38.64158 -36.36451 -35.97323 -34.82045 -33.70618 -32.53468 -31.69865 -30.48153 -29.81044 -27.91470 -27.19288 -24.49774 -24.24451 -23.13195 -22.65924 -21.77198 -21.53882 -20.00360 -19.54734 -19.17992 -18.11044 -17.54265 -17.08318 -16.90037 -16.61703 -16.46406 -16.41689 -16.01572 -15.61997 -15.43018 -14.93782 -14.89907 -14.65242 -14.59840 -14.30702 -14.12439 -14.02813 -13.71234 -13.54020 -13.27704 -13.00060 -12.94122 -12.86887 -12.81292 -12.78361 -12.17550 -12.16902 -12.04648 -11.94840 -11.66572 -11.51145 -11.46526 -11.18264 -11.01298 -10.79680 -10.70266 -10.09444 -9.67920 -9.28813 -8.69587 -8.49913 -6.38103 0.94410 1.04350 1.36016 1.46649 1.51047 1.59385 1.71516 2.07245 2.20622 2.23727 2.80795 3.31127 3.58346 3.65322 3.71856 3.78203 3.84651 4.11753 4.23455 4.32077 4.42483 4.49663 4.54094 4.55807 4.64377 4.64661 4.72021 4.78562 4.84850 4.87240 4.94614 5.03627 5.06577 5.14528 5.15755 5.15933 5.19098 5.21321 5.35077 5.38674 5.51951 5.56291 5.74925 5.86626 6.06509 6.14548 6.20261 6.40563 6.42260 6.72376 6.97775 7.03211 7.13352 7.15502 7.63017 8.43498 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.018386 B = 0.001848 C = 0.001754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1522.542336 B =15151.433040 C =15956.732403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.500 3.500 3 O -0.607 6.607 4 N -0.612 5.612 5 C 0.110 3.890 6 C -0.125 4.125 7 C -0.084 4.084 8 C 0.145 3.855 9 N -0.724 5.724 10 C 0.692 3.308 11 O -0.620 6.620 12 N -0.669 5.669 13 C 0.167 3.833 14 C -0.236 4.236 15 C -0.096 4.096 16 C -0.183 4.183 17 C 0.085 3.915 18 C -0.507 4.507 19 H 0.059 0.941 20 C 0.032 3.968 21 N -0.839 5.839 22 Si 0.983 3.017 23 H -0.259 1.259 24 H -0.264 1.264 25 H -0.267 1.267 26 C -0.225 4.225 27 C -0.128 4.128 28 C 0.102 3.898 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.104 0.896 32 H 0.090 0.910 33 H 0.066 0.934 34 H 0.084 0.916 35 H 0.047 0.953 36 H 0.104 0.896 37 H 0.043 0.957 38 H 0.062 0.938 39 H 0.413 0.587 40 H 0.418 0.582 41 H 0.136 0.864 42 H 0.126 0.874 43 H 0.100 0.900 44 H 0.285 0.715 45 H 0.089 0.911 46 H 0.059 0.941 47 H 0.100 0.900 48 H 0.117 0.883 49 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.107 8.331 -19.585 27.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.292 3.708 3 O -0.489 6.489 4 N -0.345 5.345 5 C -0.013 4.013 6 C -0.163 4.163 7 C -0.103 4.103 8 C 0.021 3.979 9 N -0.381 5.381 10 C 0.392 3.608 11 O -0.500 6.500 12 N -0.318 5.318 13 C 0.073 3.927 14 C -0.258 4.258 15 C -0.115 4.115 16 C -0.203 4.203 17 C 0.083 3.917 18 C -0.539 4.539 19 H 0.077 0.923 20 C -0.180 4.180 21 N -0.467 5.467 22 Si 0.804 3.196 23 H -0.184 1.184 24 H -0.188 1.188 25 H -0.192 1.192 26 C -0.247 4.247 27 C -0.167 4.167 28 C -0.019 4.019 29 H 0.131 0.869 30 H 0.113 0.887 31 H 0.123 0.877 32 H 0.108 0.892 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.122 0.878 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.250 0.750 40 H 0.256 0.744 41 H 0.154 0.846 42 H 0.144 0.856 43 H 0.118 0.882 44 H 0.096 0.904 45 H 0.107 0.893 46 H 0.078 0.922 47 H 0.119 0.881 48 H 0.135 0.865 49 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -18.084 8.485 -18.646 27.326 hybrid contribution 0.662 0.454 0.660 1.039 sum -17.422 8.939 -17.986 26.588 Atomic orbital electron populations 1.22069 0.88584 1.06662 1.05898 1.21631 0.92375 0.82614 0.74226 1.90696 1.72062 1.33214 1.52973 1.48371 1.07561 1.07035 1.71548 1.21578 0.79768 1.01030 0.98937 1.21990 1.00814 0.95317 0.98218 1.21383 0.95804 0.94542 0.98537 1.21285 0.78785 0.99505 0.98368 1.44898 1.10802 1.57797 1.24633 1.16243 0.81428 0.79598 0.83490 1.90955 1.72781 1.57040 1.29185 1.42282 1.08000 1.51490 1.30026 1.17326 0.93596 0.93309 0.88456 1.20524 1.02368 1.03436 0.99448 1.20863 0.98853 0.98668 0.93070 1.21298 1.02308 1.02204 0.94487 1.17871 0.91196 0.89106 0.93551 1.19658 0.94793 1.47499 0.91901 0.92259 1.26642 0.94029 0.91558 1.05753 1.69828 1.00199 1.38113 1.38561 0.85195 0.78834 0.79609 0.75927 1.18370 1.18797 1.19176 1.21230 1.05724 1.04952 0.92803 1.21921 0.93699 1.02129 0.98924 1.22154 0.97715 0.82590 0.99418 0.86907 0.88687 0.87724 0.89235 0.91510 0.89796 0.93392 0.87788 0.93846 0.92009 0.75023 0.74426 0.84623 0.85642 0.88157 0.90422 0.89312 0.92173 0.88120 0.86506 0.88778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.24 10.11 71.23 0.72 -0.52 16 2 C 0.50 8.41 7.79 87.65 0.68 9.09 16 3 O -0.61 -16.81 16.52 -3.06 -0.05 -16.86 16 4 N -0.61 -7.48 2.97 -818.92 -2.43 -9.92 16 5 C 0.11 1.45 6.43 86.37 0.56 2.01 16 6 C -0.13 -1.62 5.27 30.78 0.16 -1.45 16 7 C -0.08 -0.88 2.19 -10.67 -0.02 -0.90 16 8 C 0.14 2.80 5.06 86.38 0.44 3.24 16 9 N -0.72 -15.84 5.28 -478.52 -2.52 -18.37 16 10 C 0.69 24.23 8.40 179.05 1.50 25.74 16 11 O -0.62 -29.19 13.78 -3.99 -0.05 -29.25 16 12 N -0.67 -22.58 5.34 -317.32 -1.69 -24.28 16 13 C 0.17 7.50 6.29 38.10 0.24 7.74 16 14 C -0.24 -9.72 9.97 22.58 0.23 -9.50 16 15 C -0.10 -4.34 10.02 22.20 0.22 -4.12 16 16 C -0.18 -9.94 8.62 22.75 0.20 -9.75 16 17 C 0.09 5.01 5.50 -21.31 -0.12 4.89 16 18 C -0.51 -30.28 9.04 23.46 0.21 -30.06 16 19 H 0.06 3.57 7.85 -2.91 -0.02 3.55 16 20 C 0.03 1.76 5.31 85.26 0.45 2.21 16 21 N -0.84 -46.32 10.97 21.83 0.24 -46.08 16 22 Si 0.98 41.70 29.56 68.60 2.03 43.73 16 23 H -0.26 -10.47 7.11 99.48 0.71 -9.76 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.72 16 25 H -0.27 -11.37 7.11 99.48 0.71 -10.67 16 26 C -0.23 -12.39 8.43 22.85 0.19 -12.19 16 27 C -0.13 -0.98 5.36 30.67 0.16 -0.81 16 28 C 0.10 0.49 6.30 86.36 0.54 1.03 16 29 H 0.11 0.08 5.15 -2.39 -0.01 0.07 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.10 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.09 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.07 1.27 7.00 -2.39 -0.02 1.25 16 34 H 0.08 0.96 7.16 -2.38 -0.02 0.95 16 35 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 37 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 39 H 0.41 5.70 7.67 -92.71 -0.71 4.99 16 40 H 0.42 9.85 8.84 -92.71 -0.82 9.03 16 41 H 0.14 4.34 8.06 -2.91 -0.02 4.31 16 42 H 0.13 4.78 8.06 -2.91 -0.02 4.76 16 43 H 0.10 5.69 6.48 -2.91 -0.02 5.67 16 44 H 0.29 14.21 8.30 -92.71 -0.77 13.45 16 45 H 0.09 5.24 6.22 -2.91 -0.02 5.22 16 46 H 0.06 0.65 8.14 -2.38 -0.02 0.63 16 47 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 48 H 0.12 0.04 5.14 -2.39 -0.01 0.03 16 49 H 0.09 0.14 8.14 -2.38 -0.02 0.12 16 Total: -1.00 -85.47 393.20 1.34 -84.13 By element: Atomic # 1 Polarization: 30.78 SS G_CDS: -0.54 Total: 30.24 kcal Atomic # 6 Polarization: -19.73 SS G_CDS: 6.37 Total: -13.36 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -6.42 Total: -98.63 kcal Atomic # 8 Polarization: -46.00 SS G_CDS: -0.11 Total: -46.11 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.73 kcal Total: -85.47 1.34 -84.13 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365201277.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.920 kcal (2) G-P(sol) polarization free energy of solvation -85.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.552 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds