Wall clock time and date at job start Wed Apr 1 2020 04:05:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46492 * 109.47540 * 2 1 4 4 C 1.46506 * 119.99800 * 269.99581 * 3 2 1 5 5 C 1.50699 * 109.47352 * 269.99857 * 4 3 2 6 6 H 1.08000 * 119.99828 * 0.02562 * 5 4 3 7 7 C 1.37870 * 120.00146 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99841 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00215 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47166 * 60.00152 * 9 7 5 11 11 H 1.48506 * 109.47069 * 180.02562 * 9 7 5 12 12 H 1.48501 * 109.47159 * 299.99829 * 9 7 5 13 13 C 1.34773 * 120.00231 * 90.00038 * 3 2 1 14 14 O 1.21283 * 120.00360 * 179.72577 * 13 3 2 15 15 C 1.50706 * 120.00081 * 359.97438 * 13 3 2 16 16 N 1.46895 * 109.47182 * 179.72734 * 15 13 3 17 17 C 1.47477 * 111.00081 * 265.96691 * 16 15 13 18 18 C 1.53503 * 87.93674 * 221.29832 * 17 16 15 19 19 N 1.46507 * 114.34555 * 139.68292 * 18 17 16 20 20 C 1.34772 * 119.99768 * 111.07728 * 19 18 17 21 21 O 1.21555 * 120.00541 * 0.02562 * 20 19 18 22 22 C 1.47851 * 119.99966 * 180.02562 * 20 19 18 23 23 C 1.39576 * 120.13784 * 359.72333 * 22 20 19 24 24 C 1.37963 * 119.84522 * 179.74652 * 23 22 20 25 25 C 1.38355 * 120.14788 * 0.53385 * 24 23 22 26 26 C 1.38362 * 120.29284 * 359.73953 * 25 24 23 27 27 C 1.37958 * 120.14527 * 359.97438 * 26 25 24 28 28 C 1.47484 * 110.99756 * 170.00145 * 16 15 13 29 29 H 1.09001 * 109.46388 * 60.00135 * 1 2 3 30 30 H 1.08990 * 109.47469 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46885 * 300.00184 * 1 2 3 32 32 H 1.08999 * 109.47326 * 239.99182 * 2 1 3 33 33 H 1.09006 * 109.46825 * 120.00024 * 2 1 3 34 34 H 1.08995 * 109.47161 * 30.00561 * 4 3 2 35 35 H 1.09002 * 109.46900 * 149.99872 * 4 3 2 36 36 H 0.97007 * 120.00044 * 180.02562 * 8 7 5 37 37 H 1.09001 * 109.46564 * 299.73030 * 15 13 3 38 38 H 1.08998 * 109.47012 * 59.72084 * 15 13 3 39 39 H 1.09000 * 113.48071 * 336.07220 * 17 16 15 40 40 H 1.09004 * 113.47566 * 106.53029 * 17 16 15 41 41 H 1.09003 * 114.17671 * 272.37856 * 18 17 16 42 42 H 0.97000 * 119.99701 * 291.08193 * 19 18 17 43 43 H 1.07993 * 120.07891 * 359.97438 * 23 22 20 44 44 H 1.07999 * 119.92547 * 180.27848 * 24 23 22 45 45 H 1.08001 * 119.85657 * 179.72157 * 25 24 23 46 46 H 1.07999 * 119.93438 * 180.02562 * 26 25 24 47 47 H 1.07996 * 120.07874 * 180.02562 * 27 26 25 48 48 H 1.09005 * 113.47182 * 253.47069 * 28 16 15 49 49 H 1.08997 * 113.47905 * 23.93586 * 28 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2627 2.0716 -1.2688 5 6 3.6860 1.8348 -1.7038 6 1 4.3428 1.2300 -1.0961 7 6 4.1494 2.3893 -2.8779 8 7 3.3494 3.1253 -3.6181 9 14 5.9134 2.0951 -3.4175 10 1 6.1404 0.6382 -3.5947 11 1 6.1610 2.7952 -4.7035 12 1 6.8413 2.6185 -2.3829 13 6 2.2431 2.0164 1.1671 14 8 2.6522 3.1582 1.1672 15 6 1.9914 1.3063 2.4723 16 7 2.3160 2.2040 3.5888 17 6 3.7008 1.9940 4.0505 18 6 3.1814 2.1204 5.4894 19 7 3.7832 1.1759 6.4339 20 6 4.6120 1.6229 7.3981 21 8 4.8598 2.8098 7.4844 22 6 5.2199 0.6697 8.3509 23 6 4.9328 -0.6930 8.2581 24 6 5.5075 -1.5778 9.1471 25 6 6.3579 -1.1156 10.1358 26 6 6.6420 0.2347 10.2368 27 6 6.0787 1.1294 9.3505 28 6 1.8615 1.6370 4.8722 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3634 -1.0275 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.5819 1.6876 -2.0284 35 1 2.0958 3.1409 -1.1385 36 1 3.6753 3.5152 -4.4445 37 1 0.9422 1.0169 2.5319 38 1 2.6175 0.4159 2.5281 39 1 4.0916 1.0040 3.8152 40 1 4.3809 2.7956 3.7623 41 1 3.1504 3.1433 5.8646 42 1 3.5853 0.2288 6.3652 43 1 4.2654 -1.0545 7.4899 44 1 5.2899 -2.6331 9.0737 45 1 6.8016 -1.8119 10.8320 46 1 7.3069 0.5891 11.0105 47 1 6.3016 2.1831 9.4301 48 1 0.9827 2.1361 5.2805 49 1 1.7614 0.5517 4.8563 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001377859056.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:05:19 Heat of formation + Delta-G solvation = 4.368871 kcal Electronic energy + Delta-G solvation = -29304.977414 eV Core-core repulsion = 25233.631561 eV Total energy + Delta-G solvation = -4071.345853 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.98560 -39.99920 -38.73446 -38.16790 -35.21369 -34.42895 -32.81490 -31.76669 -31.37969 -30.23276 -29.92251 -27.17885 -26.10020 -25.24413 -23.83300 -23.02510 -22.92017 -22.11605 -20.84534 -20.42513 -18.51068 -18.24907 -16.97297 -16.63900 -16.51265 -16.32256 -15.70725 -15.56768 -15.37501 -15.17251 -14.94120 -14.68213 -14.33965 -14.11890 -13.93800 -13.67142 -13.37236 -13.16098 -13.03095 -12.91054 -12.76951 -12.32684 -12.14213 -12.02966 -11.87688 -11.57543 -11.51234 -11.40807 -11.19047 -10.91609 -10.90334 -10.68189 -10.51437 -10.27464 -10.11015 -9.63002 -9.51066 -9.45600 -9.26928 -9.13965 -8.61803 -8.41291 -7.62140 -6.02151 -4.06889 0.42087 0.89811 2.51727 2.72583 3.32228 3.37279 3.39114 3.45458 3.48491 3.69048 4.09100 4.28386 4.31914 4.35396 4.46414 4.46989 4.60499 4.67692 4.89880 4.98526 4.98910 5.02157 5.15020 5.19134 5.26660 5.31860 5.32575 5.43684 5.45952 5.50696 5.61683 5.70487 5.75606 5.83603 5.88637 5.93079 5.98290 5.99505 6.14729 6.21472 6.23725 6.41018 6.45989 6.80524 7.12322 7.15516 7.48466 7.58855 7.88585 7.94518 8.26144 8.46872 8.93030 9.17685 9.58137 11.05787 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013123 B = 0.002079 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2133.078180 B =13465.496627 C =14273.449744 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.108 3.892 3 N -0.601 5.601 4 C 0.248 3.752 5 C -0.525 4.525 6 H 0.055 0.945 7 C 0.061 3.939 8 N -0.894 5.894 9 Si 0.897 3.103 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.276 1.276 13 C 0.507 3.493 14 O -0.518 6.518 15 C 0.002 3.998 16 N -0.438 5.438 17 C -0.011 4.011 18 C 0.120 3.880 19 N -0.715 5.715 20 C 0.560 3.440 21 O -0.530 6.530 22 C -0.134 4.134 23 C -0.087 4.087 24 C -0.128 4.128 25 C -0.096 4.096 26 C -0.128 4.128 27 C -0.060 4.060 28 C -0.012 4.012 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.050 0.950 32 H 0.082 0.918 33 H 0.060 0.940 34 H 0.031 0.969 35 H 0.043 0.957 36 H 0.264 0.736 37 H 0.097 0.903 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.133 0.867 42 H 0.399 0.601 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.127 0.873 46 H 0.130 0.870 47 H 0.137 0.863 48 H 0.096 0.904 49 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.122 -14.296 26.537 30.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.017 4.017 3 N -0.335 5.335 4 C 0.129 3.871 5 C -0.564 4.564 6 H 0.073 0.927 7 C -0.141 4.141 8 N -0.533 5.533 9 Si 0.725 3.275 10 H -0.203 1.203 11 H -0.212 1.212 12 H -0.202 1.202 13 C 0.292 3.708 14 O -0.393 6.393 15 C -0.130 4.130 16 N -0.161 5.161 17 C -0.141 4.141 18 C 0.014 3.986 19 N -0.366 5.366 20 C 0.347 3.653 21 O -0.407 6.407 22 C -0.137 4.137 23 C -0.105 4.105 24 C -0.146 4.146 25 C -0.114 4.114 26 C -0.146 4.146 27 C -0.078 4.078 28 C -0.142 4.142 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.100 0.900 33 H 0.078 0.922 34 H 0.049 0.951 35 H 0.061 0.939 36 H 0.073 0.927 37 H 0.115 0.885 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.116 0.884 41 H 0.150 0.850 42 H 0.235 0.765 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.145 0.855 46 H 0.148 0.852 47 H 0.155 0.845 48 H 0.114 0.886 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -0.986 -12.031 26.119 28.774 hybrid contribution 1.051 -1.749 -0.452 2.090 sum 0.066 -13.781 25.667 29.133 Atomic orbital electron populations 1.22229 0.96858 1.01292 1.02394 1.21380 0.93464 0.84447 1.02399 1.48265 1.64400 1.13128 1.07707 1.19236 0.96125 0.93675 0.78066 1.21380 0.96965 1.31893 1.06181 0.92693 1.24935 0.97795 0.94965 0.96443 1.69924 1.35693 1.33392 1.14327 0.86574 0.84910 0.78159 0.77853 1.20324 1.21161 1.20192 1.19991 0.79179 0.87119 0.84483 1.90688 1.44164 1.17721 1.86753 1.22723 1.02684 0.94899 0.92680 1.68809 1.06309 1.40925 1.00011 1.24458 0.93662 1.02395 0.93572 1.22700 0.92726 0.95568 0.87566 1.45869 1.48001 1.10972 1.31792 1.18330 0.78532 0.88061 0.80376 1.90805 1.60558 1.16659 1.72645 1.19989 1.01634 0.93571 0.98541 1.21319 0.98501 0.92190 0.98532 1.21131 0.97906 0.99947 0.95609 1.21411 0.96628 0.95842 0.97506 1.21206 1.00491 0.93300 0.99599 1.21342 0.93392 1.00870 0.92241 1.24324 0.98777 0.99321 0.91773 0.91939 0.92267 0.93136 0.89988 0.92193 0.95099 0.93910 0.92683 0.88495 0.91425 0.91026 0.88436 0.84973 0.76516 0.85652 0.85309 0.85518 0.85213 0.84509 0.88571 0.91042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.67 5.93 -4.05 -0.02 1.64 16 3 N -0.60 -12.65 2.46 -175.06 -0.43 -13.08 16 4 C 0.25 6.54 5.16 -5.19 -0.03 6.51 16 5 C -0.53 -15.01 9.39 -34.44 -0.32 -15.33 16 6 H 0.05 1.56 7.81 -52.49 -0.41 1.15 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 8 N -0.89 -26.86 13.29 55.43 0.74 -26.13 16 9 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 11 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.51 10.65 7.74 -10.98 -0.09 10.56 16 14 O -0.52 -13.55 16.01 5.56 0.09 -13.46 16 15 C 0.00 0.03 3.86 -4.98 -0.02 0.01 16 16 N -0.44 -6.35 5.82 -246.13 -1.43 -7.78 16 17 C -0.01 -0.14 7.53 -7.56 -0.06 -0.20 16 18 C 0.12 1.31 4.59 -67.72 -0.31 1.00 16 19 N -0.71 -6.41 5.34 -54.48 -0.29 -6.70 16 20 C 0.56 6.29 7.77 -12.33 -0.10 6.20 16 21 O -0.53 -8.04 15.94 5.32 0.08 -7.96 16 22 C -0.13 -1.21 5.87 -104.96 -0.62 -1.83 16 23 C -0.09 -0.56 9.54 -39.18 -0.37 -0.94 16 24 C -0.13 -0.71 10.03 -39.64 -0.40 -1.10 16 25 C -0.10 -0.53 10.04 -39.49 -0.40 -0.92 16 26 C -0.13 -0.83 10.03 -39.64 -0.40 -1.22 16 27 C -0.06 -0.51 9.60 -39.18 -0.38 -0.89 16 28 C -0.01 -0.12 7.45 -7.55 -0.06 -0.17 16 29 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.05 0.62 7.23 -51.93 -0.38 0.24 16 32 H 0.08 1.34 8.07 -51.93 -0.42 0.92 16 33 H 0.06 0.75 6.43 -51.93 -0.33 0.42 16 34 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 35 H 0.04 1.29 7.43 -51.93 -0.39 0.90 16 36 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 37 H 0.10 1.18 7.14 -51.93 -0.37 0.81 16 38 H 0.07 0.84 6.55 -51.93 -0.34 0.50 16 39 H 0.07 0.85 7.42 -51.93 -0.39 0.47 16 40 H 0.10 1.56 8.14 -51.93 -0.42 1.14 16 41 H 0.13 1.70 7.45 -51.93 -0.39 1.32 16 42 H 0.40 2.35 6.79 -40.82 -0.28 2.07 16 43 H 0.13 0.50 6.41 -52.49 -0.34 0.17 16 44 H 0.13 0.42 8.06 -52.49 -0.42 0.00 16 45 H 0.13 0.41 8.06 -52.49 -0.42 -0.02 16 46 H 0.13 0.56 8.06 -52.49 -0.42 0.14 16 47 H 0.14 1.23 7.65 -52.49 -0.40 0.83 16 48 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 49 H 0.07 0.51 7.90 -51.93 -0.41 0.10 16 LS Contribution 407.33 15.07 6.14 6.14 Total: -1.00 -37.33 407.33 -10.74 -48.07 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -7.35 Total: 0.64 kcal Atomic # 6 Polarization: 6.44 SS G_CDS: -3.27 Total: 3.17 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -1.42 Total: -53.68 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: 0.17 Total: -21.42 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.33 -10.74 -48.07 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001377859056.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.442 kcal (2) G-P(sol) polarization free energy of solvation -37.328 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds