Wall clock time and date at job start Wed Apr 1 2020 03:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47573 * 2 1 4 4 C 1.34417 * 124.35032 * 270.02050 * 3 2 1 5 5 O 1.21284 * 124.93942 * 0.39512 * 4 3 2 6 6 C 1.51280 * 110.11598 * 180.38505 * 4 3 2 7 7 C 1.54632 * 104.19392 * 16.25383 * 6 4 3 8 8 H 1.09003 * 110.96462 * 217.08011 * 7 6 4 9 9 C 1.50699 * 110.99864 * 93.33552 * 7 6 4 10 10 O 1.21283 * 119.99821 * 272.35728 * 9 7 6 11 11 N 1.34780 * 120.00007 * 92.35905 * 9 7 6 12 12 C 1.46498 * 119.99892 * 4.59684 * 11 9 7 13 13 C 1.46498 * 119.99870 * 184.60622 * 11 9 7 14 14 H 1.09000 * 109.46895 * 359.97438 * 13 11 9 15 15 C 1.52991 * 109.47402 * 120.00076 * 13 11 9 16 16 C 1.50710 * 109.46474 * 239.99840 * 13 11 9 17 17 H 1.07990 * 120.00388 * 359.97438 * 16 13 11 18 18 C 1.37882 * 119.99619 * 180.02562 * 16 13 11 19 19 N 1.31520 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00076 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47261 * 89.99561 * 20 18 16 22 22 H 1.48495 * 109.47310 * 210.00205 * 20 18 16 23 23 H 1.48504 * 109.46810 * 330.00048 * 20 18 16 24 24 C 1.46769 * 124.34708 * 89.99729 * 3 2 1 25 25 H 1.08999 * 110.24516 * 44.00806 * 24 3 2 26 26 C 1.50697 * 110.31765 * 282.04585 * 24 3 2 27 27 C 1.38671 * 120.41696 * 143.91515 * 26 24 3 28 28 C 1.38628 * 118.42160 * 179.97438 * 27 26 24 29 29 C 1.38223 * 119.16094 * 359.97438 * 28 27 26 30 30 N 1.31856 * 120.76649 * 0.02562 * 29 28 27 31 31 C 1.31890 * 121.72031 * 359.70252 * 30 29 28 32 32 H 1.09002 * 109.46910 * 300.00329 * 1 2 3 33 33 H 1.09004 * 109.46818 * 59.99912 * 1 2 3 34 34 H 1.08994 * 109.47441 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46910 * 239.99671 * 2 1 3 36 36 H 1.09004 * 109.46818 * 120.00087 * 2 1 3 37 37 H 1.09005 * 110.48612 * 257.57931 * 6 4 3 38 38 H 1.08992 * 110.48809 * 134.93510 * 6 4 3 39 39 H 1.09003 * 109.46671 * 94.33269 * 12 11 9 40 40 H 1.08995 * 109.47250 * 214.32825 * 12 11 9 41 41 H 1.08992 * 109.47716 * 334.33700 * 12 11 9 42 42 H 1.08996 * 109.47322 * 59.99517 * 15 13 11 43 43 H 1.09006 * 109.47449 * 179.97438 * 15 13 11 44 44 H 1.09005 * 109.47006 * 299.99359 * 15 13 11 45 45 H 0.97001 * 119.99855 * 180.02562 * 19 18 16 46 46 H 1.08001 * 120.78941 * 359.96927 * 27 26 24 47 47 H 1.08000 * 120.41940 * 179.97438 * 28 27 26 48 48 H 1.08000 * 119.61982 * 180.02562 * 29 28 27 49 49 H 1.08001 * 119.61444 * 180.31409 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2709 2.0964 -1.1098 5 8 2.1211 1.6944 -2.2442 6 6 2.7689 3.4756 -0.7378 7 6 3.1742 3.3442 0.7487 8 1 2.9303 4.2518 1.3011 9 6 4.6380 3.0120 0.8820 10 8 5.0012 1.8550 0.8649 11 7 5.5436 4.0006 1.0204 12 6 5.0975 5.3907 1.1424 13 6 6.9739 3.6851 1.0486 14 1 7.1106 2.6086 0.9456 15 6 7.6771 4.4017 -0.1058 16 6 7.5635 4.1431 2.3578 17 1 6.9357 4.6216 3.0947 18 6 8.9047 3.9520 2.6141 19 7 9.6694 3.3697 1.7164 20 14 9.6358 4.5202 4.2365 21 1 9.5434 3.4226 5.2325 22 1 11.0604 4.8880 4.0357 23 1 8.8845 5.7019 4.7310 24 6 2.2945 2.1619 1.2118 25 1 2.8328 1.5531 1.9382 26 6 1.0087 2.6715 1.8101 27 6 0.8577 2.7509 3.1863 28 6 -0.3423 3.2262 3.6921 29 6 -1.3411 3.6031 2.8141 30 7 -1.1625 3.5140 1.5108 31 6 -0.0325 3.0714 0.9944 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.9737 4.2122 -0.8527 38 1 3.6319 3.7464 -1.3460 39 1 5.0178 5.6555 2.1967 40 1 5.8187 6.0477 0.6564 41 1 4.1242 5.5033 0.6650 42 1 7.5404 5.4781 -0.0025 43 1 8.7415 4.1673 -0.0846 44 1 7.2507 4.0705 -1.0527 45 1 10.6129 3.2349 1.8969 46 1 1.6560 2.4495 3.8483 47 1 -0.4948 3.3012 4.7587 48 1 -2.2788 3.9749 3.2001 49 1 0.0790 3.0173 -0.0785 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001433578927.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:16 Heat of formation + Delta-G solvation = -21.485067 kcal Electronic energy + Delta-G solvation = -31763.909222 eV Core-core repulsion = 27691.442258 eV Total energy + Delta-G solvation = -4072.466964 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.53032 -39.88795 -38.83101 -36.58595 -35.38936 -34.12448 -32.96857 -32.69224 -31.51094 -30.15207 -29.08934 -27.52089 -26.25737 -25.28666 -24.56498 -23.77984 -23.14369 -22.14762 -20.73129 -19.41402 -18.55359 -17.74291 -16.96125 -16.86475 -16.52783 -16.22439 -15.83226 -15.45707 -15.02965 -14.97759 -14.49826 -14.34314 -14.17981 -13.98891 -13.62780 -13.41734 -13.29434 -13.18661 -13.08592 -12.74713 -12.67589 -12.25230 -12.08715 -11.97984 -11.86942 -11.65012 -11.57278 -11.43650 -11.17734 -11.10183 -10.88683 -10.77361 -10.30656 -10.22188 -10.05879 -9.79472 -9.75900 -9.35290 -9.22894 -9.00122 -8.80618 -8.48335 -7.70158 -6.12577 -4.20991 0.79014 1.01513 2.57066 2.87270 3.09907 3.22754 3.29815 3.30891 3.49034 3.71259 4.16059 4.22116 4.33198 4.39673 4.47307 4.63111 4.69471 4.74685 4.83075 4.93508 4.98912 5.13195 5.17823 5.21557 5.26243 5.29916 5.40726 5.46921 5.58357 5.60798 5.63679 5.68387 5.79830 5.86060 5.95231 5.96981 6.04902 6.21654 6.40121 6.51464 6.69795 6.75373 6.98109 7.06597 7.32052 7.43234 7.64989 7.70905 7.94177 8.12246 8.15805 8.40926 8.74178 8.91057 9.45615 10.92709 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.003390 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.513528 B = 8257.746558 C = 9256.024972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.125 3.875 3 N -0.601 5.601 4 C 0.525 3.475 5 O -0.529 6.529 6 C -0.144 4.144 7 C -0.118 4.118 8 H 0.116 0.884 9 C 0.511 3.489 10 O -0.540 6.540 11 N -0.587 5.587 12 C 0.082 3.918 13 C 0.259 3.741 14 H 0.063 0.937 15 C -0.148 4.148 16 C -0.526 4.526 17 H 0.059 0.941 18 C 0.065 3.935 19 N -0.887 5.887 20 Si 0.898 3.102 21 H -0.280 1.280 22 H -0.285 1.285 23 H -0.274 1.274 24 C 0.197 3.803 25 H 0.110 0.890 26 C -0.147 4.147 27 C -0.060 4.060 28 C -0.170 4.170 29 C 0.096 3.904 30 N -0.484 5.484 31 C 0.119 3.881 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.066 0.934 35 H 0.084 0.916 36 H 0.080 0.920 37 H 0.112 0.888 38 H 0.110 0.890 39 H 0.052 0.948 40 H 0.073 0.927 41 H 0.054 0.946 42 H 0.031 0.969 43 H 0.094 0.906 44 H 0.012 0.988 45 H 0.264 0.736 46 H 0.139 0.861 47 H 0.137 0.863 48 H 0.155 0.845 49 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.703 1.234 2.248 19.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.004 3.996 3 N -0.334 5.334 4 C 0.313 3.687 5 O -0.405 6.405 6 C -0.184 4.184 7 C -0.140 4.140 8 H 0.134 0.866 9 C 0.296 3.704 10 O -0.418 6.418 11 N -0.317 5.317 12 C -0.062 4.062 13 C 0.159 3.841 14 H 0.081 0.919 15 C -0.207 4.207 16 C -0.564 4.564 17 H 0.077 0.923 18 C -0.138 4.138 19 N -0.525 5.525 20 Si 0.726 3.274 21 H -0.206 1.206 22 H -0.211 1.211 23 H -0.199 1.199 24 C 0.091 3.909 25 H 0.128 0.872 26 C -0.150 4.150 27 C -0.087 4.087 28 C -0.190 4.190 29 C -0.061 4.061 30 N -0.192 5.192 31 C -0.039 4.039 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.073 0.927 42 H 0.050 0.950 43 H 0.113 0.887 44 H 0.031 0.969 45 H 0.074 0.926 46 H 0.157 0.843 47 H 0.154 0.846 48 H 0.172 0.828 49 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -20.047 0.528 1.026 20.080 hybrid contribution 1.182 0.252 1.691 2.079 sum -18.866 0.780 2.717 19.076 Atomic orbital electron populations 1.22217 0.95926 1.02206 1.02296 1.21329 0.93823 0.80912 1.03579 1.48142 1.65478 1.13526 1.06213 1.20697 0.76255 0.87380 0.84377 1.90718 1.53666 1.75263 1.20861 1.22328 1.03994 0.96650 0.95431 1.22429 0.94479 0.99589 0.97509 0.86582 1.19846 0.86419 0.86020 0.78129 1.90692 1.80572 1.19438 1.51123 1.48217 1.08894 1.05628 1.69009 1.21644 0.99073 0.84128 1.01355 1.18970 0.72589 0.98010 0.94557 0.91871 1.22107 1.04479 0.98491 0.95597 1.21280 0.94013 1.40044 1.01108 0.92272 1.24894 0.96931 0.94934 0.96998 1.69877 1.06282 1.42355 1.33989 0.86498 0.78348 0.78952 0.83597 1.20622 1.21111 1.19921 1.20205 0.90665 0.92022 0.88015 0.87181 1.21130 0.97533 1.01712 0.94655 1.21518 0.97525 0.95257 0.94357 1.22147 0.94443 1.00854 1.01571 1.22816 0.98901 0.95605 0.88768 1.67752 1.23217 1.13519 1.14688 1.22534 0.88051 0.93070 1.00204 0.92640 0.92223 0.91546 0.89757 0.90190 0.87033 0.87162 0.92903 0.90818 0.92695 0.95002 0.88710 0.96932 0.92632 0.84286 0.84551 0.82799 0.83464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 9.67 37.16 0.36 -1.32 16 2 C 0.13 1.46 6.64 -4.04 -0.03 1.43 16 3 N -0.60 -7.97 2.04 -166.19 -0.34 -8.31 16 4 C 0.53 7.95 6.93 -10.86 -0.08 7.87 16 5 O -0.53 -9.71 17.60 5.55 0.10 -9.61 16 6 C -0.14 -1.80 5.84 -26.74 -0.16 -1.96 16 7 C -0.12 -1.54 2.07 -90.14 -0.19 -1.73 16 8 H 0.12 1.25 6.26 -51.93 -0.32 0.93 16 9 C 0.51 9.47 6.71 -10.98 -0.07 9.39 16 10 O -0.54 -12.24 15.39 5.56 0.09 -12.15 16 11 N -0.59 -11.45 2.75 -175.27 -0.48 -11.93 16 12 C 0.08 1.23 9.38 59.85 0.56 1.79 16 13 C 0.26 6.29 2.63 -69.08 -0.18 6.11 16 14 H 0.06 1.81 6.91 -51.93 -0.36 1.45 16 15 C -0.15 -3.42 8.94 37.15 0.33 -3.08 16 16 C -0.53 -13.61 8.37 -34.43 -0.29 -13.90 16 17 H 0.06 1.50 7.52 -52.49 -0.39 1.10 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 19 N -0.89 -24.51 11.32 55.43 0.63 -23.88 16 20 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 23 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 24 C 0.20 2.40 2.54 -68.16 -0.17 2.23 16 25 H 0.11 1.47 7.43 -51.93 -0.39 1.08 16 26 C -0.15 -1.51 4.35 -104.48 -0.45 -1.96 16 27 C -0.06 -0.53 9.84 -39.28 -0.39 -0.92 16 28 C -0.17 -1.31 10.11 -39.44 -0.40 -1.71 16 29 C 0.10 0.82 11.18 -17.55 -0.20 0.63 16 30 N -0.48 -5.29 10.36 -13.25 -0.14 -5.43 16 31 C 0.12 1.28 8.63 -17.55 -0.15 1.13 16 32 H 0.05 0.57 6.48 -51.93 -0.34 0.23 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 35 H 0.08 1.07 7.93 -51.93 -0.41 0.66 16 36 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 37 H 0.11 1.07 8.04 -51.93 -0.42 0.65 16 38 H 0.11 1.49 7.90 -51.93 -0.41 1.08 16 39 H 0.05 0.77 8.01 -51.93 -0.42 0.36 16 40 H 0.07 1.13 6.44 -51.93 -0.33 0.80 16 41 H 0.05 0.62 6.05 -51.93 -0.31 0.30 16 42 H 0.03 0.67 6.69 -51.93 -0.35 0.32 16 43 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 44 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 45 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 46 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 47 H 0.14 0.71 8.06 -52.49 -0.42 0.28 16 48 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 49 H 0.15 1.65 6.42 -52.49 -0.34 1.32 16 LS Contribution 392.66 15.07 5.92 5.92 Total: -1.00 -33.04 392.66 -8.04 -41.08 By element: Atomic # 1 Polarization: 10.51 SS G_CDS: -7.20 Total: 3.31 kcal Atomic # 6 Polarization: 7.21 SS G_CDS: -1.59 Total: 5.62 kcal Atomic # 7 Polarization: -49.22 SS G_CDS: -0.33 Total: -49.56 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: 0.18 Total: -21.76 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -33.04 -8.04 -41.08 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433578927.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.593 kcal (2) G-P(sol) polarization free energy of solvation -33.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.485 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds