Wall clock time and date at job start Wed Apr 1 2020 03:05:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46500 * 109.47573 * 2 1 4 4 C 1.34417 * 124.35032 * 270.02050 * 3 2 1 5 5 O 1.21284 * 124.93942 * 0.39512 * 4 3 2 6 6 C 1.51280 * 110.11598 * 180.38505 * 4 3 2 7 7 C 1.54632 * 104.19392 * 16.25383 * 6 4 3 8 8 H 1.09003 * 110.96462 * 217.08011 * 7 6 4 9 9 C 1.50699 * 110.99864 * 93.33552 * 7 6 4 10 10 O 1.21283 * 119.99821 * 272.35728 * 9 7 6 11 11 N 1.34780 * 120.00007 * 92.35905 * 9 7 6 12 12 C 1.46498 * 119.99892 * 4.59684 * 11 9 7 13 13 C 1.46498 * 119.99870 * 184.60622 * 11 9 7 14 14 H 1.09000 * 109.46895 * 359.97438 * 13 11 9 15 15 C 1.52991 * 109.47402 * 120.00076 * 13 11 9 16 16 C 1.50710 * 109.46474 * 239.99840 * 13 11 9 17 17 H 1.07990 * 120.00388 * 359.97438 * 16 13 11 18 18 C 1.37882 * 119.99619 * 180.02562 * 16 13 11 19 19 N 1.31520 * 119.99913 * 359.97438 * 18 16 13 20 20 Si 1.86794 * 120.00076 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.47261 * 89.99561 * 20 18 16 22 22 H 1.48495 * 109.47310 * 210.00205 * 20 18 16 23 23 H 1.48504 * 109.46810 * 330.00048 * 20 18 16 24 24 C 1.46769 * 124.34708 * 89.99729 * 3 2 1 25 25 H 1.08999 * 110.24516 * 44.00806 * 24 3 2 26 26 C 1.50697 * 110.31765 * 282.04585 * 24 3 2 27 27 C 1.38671 * 120.41696 * 143.91515 * 26 24 3 28 28 C 1.38628 * 118.42160 * 179.97438 * 27 26 24 29 29 C 1.38223 * 119.16094 * 359.97438 * 28 27 26 30 30 N 1.31856 * 120.76649 * 0.02562 * 29 28 27 31 31 C 1.31890 * 121.72031 * 359.70252 * 30 29 28 32 32 H 1.09002 * 109.46910 * 300.00329 * 1 2 3 33 33 H 1.09004 * 109.46818 * 59.99912 * 1 2 3 34 34 H 1.08994 * 109.47441 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46910 * 239.99671 * 2 1 3 36 36 H 1.09004 * 109.46818 * 120.00087 * 2 1 3 37 37 H 1.09005 * 110.48612 * 257.57931 * 6 4 3 38 38 H 1.08992 * 110.48809 * 134.93510 * 6 4 3 39 39 H 1.09003 * 109.46671 * 94.33269 * 12 11 9 40 40 H 1.08995 * 109.47250 * 214.32825 * 12 11 9 41 41 H 1.08992 * 109.47716 * 334.33700 * 12 11 9 42 42 H 1.08996 * 109.47322 * 59.99517 * 15 13 11 43 43 H 1.09006 * 109.47449 * 179.97438 * 15 13 11 44 44 H 1.09005 * 109.47006 * 299.99359 * 15 13 11 45 45 H 0.97001 * 119.99855 * 180.02562 * 19 18 16 46 46 H 1.08001 * 120.78941 * 359.96927 * 27 26 24 47 47 H 1.08000 * 120.41940 * 179.97438 * 28 27 26 48 48 H 1.08000 * 119.61982 * 180.02562 * 29 28 27 49 49 H 1.08001 * 119.61444 * 180.31409 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2709 2.0964 -1.1098 5 8 2.1211 1.6944 -2.2442 6 6 2.7689 3.4756 -0.7378 7 6 3.1742 3.3442 0.7487 8 1 2.9303 4.2518 1.3011 9 6 4.6380 3.0120 0.8820 10 8 5.0012 1.8550 0.8649 11 7 5.5436 4.0006 1.0204 12 6 5.0975 5.3907 1.1424 13 6 6.9739 3.6851 1.0486 14 1 7.1106 2.6086 0.9456 15 6 7.6771 4.4017 -0.1058 16 6 7.5635 4.1431 2.3578 17 1 6.9357 4.6216 3.0947 18 6 8.9047 3.9520 2.6141 19 7 9.6694 3.3697 1.7164 20 14 9.6358 4.5202 4.2365 21 1 9.5434 3.4226 5.2325 22 1 11.0604 4.8880 4.0357 23 1 8.8845 5.7019 4.7310 24 6 2.2945 2.1619 1.2118 25 1 2.8328 1.5531 1.9382 26 6 1.0087 2.6715 1.8101 27 6 0.8577 2.7509 3.1863 28 6 -0.3423 3.2262 3.6921 29 6 -1.3411 3.6031 2.8141 30 7 -1.1625 3.5140 1.5108 31 6 -0.0325 3.0714 0.9944 32 1 -0.3633 0.5139 0.8900 33 1 -0.3633 0.5139 -0.8900 34 1 -0.3634 -1.0276 -0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 1.9737 4.2122 -0.8527 38 1 3.6319 3.7464 -1.3460 39 1 5.0178 5.6555 2.1967 40 1 5.8187 6.0477 0.6564 41 1 4.1242 5.5033 0.6650 42 1 7.5404 5.4781 -0.0025 43 1 8.7415 4.1673 -0.0846 44 1 7.2507 4.0705 -1.0527 45 1 10.6129 3.2349 1.8969 46 1 1.6560 2.4495 3.8483 47 1 -0.4948 3.3012 4.7587 48 1 -2.2788 3.9749 3.2001 49 1 0.0790 3.0173 -0.0785 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001433578927.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:05:14 Heat of formation + Delta-G solvation = -41.919261 kcal Electronic energy + Delta-G solvation = -31764.795315 eV Core-core repulsion = 27691.442258 eV Total energy + Delta-G solvation = -4073.353057 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 345.184 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.57643 -40.78754 -40.23012 -37.81336 -37.03021 -35.26324 -34.62388 -33.54723 -32.27531 -31.63620 -30.41675 -28.53492 -27.61397 -27.27212 -25.64568 -24.54311 -24.06160 -23.25169 -22.18044 -20.51509 -19.99964 -18.75779 -18.44325 -17.93015 -17.80302 -17.33085 -17.20995 -16.60261 -16.46541 -16.05846 -15.90626 -15.56537 -15.18457 -14.87564 -14.72906 -14.53999 -14.40161 -14.39525 -14.22557 -13.97533 -13.82556 -13.47389 -13.36704 -13.17532 -13.04068 -12.93505 -12.82693 -12.73480 -12.65361 -12.56524 -12.52439 -12.16325 -12.11610 -12.08475 -11.16736 -10.99523 -10.79202 -10.63902 -10.48825 -10.47156 -10.00105 -9.80206 -9.32560 -8.12874 -6.29313 0.09110 0.33952 1.40397 1.43348 1.44119 1.53933 1.65816 1.90407 2.23131 2.46491 2.81115 3.15558 3.17951 3.32026 3.33997 3.57047 3.68871 3.82094 3.97616 4.02819 4.05756 4.13397 4.19384 4.29526 4.42590 4.44887 4.49817 4.55335 4.64475 4.67974 4.73058 4.75867 4.82423 4.82713 4.88753 4.89207 5.05831 5.09522 5.17636 5.21646 5.24695 5.47465 5.51871 5.62107 5.68134 5.75748 5.98882 6.03230 6.17386 6.78960 6.80798 7.01164 7.02766 7.30602 7.46782 8.91366 Molecular weight = 345.18amu Principal moments of inertia in cm(-1) A = 0.013314 B = 0.003390 C = 0.003024 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2102.513528 B = 8257.746558 C = 9256.024972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.118 3.882 3 N -0.600 5.600 4 C 0.513 3.487 5 O -0.572 6.572 6 C -0.137 4.137 7 C -0.102 4.102 8 H 0.151 0.849 9 C 0.504 3.496 10 O -0.591 6.591 11 N -0.594 5.594 12 C 0.076 3.924 13 C 0.263 3.737 14 H 0.008 0.992 15 C -0.135 4.135 16 C -0.533 4.533 17 H 0.065 0.935 18 C 0.014 3.986 19 N -0.920 5.920 20 Si 0.963 3.037 21 H -0.282 1.282 22 H -0.284 1.284 23 H -0.259 1.259 24 C 0.202 3.798 25 H 0.097 0.903 26 C -0.149 4.149 27 C -0.063 4.063 28 C -0.160 4.160 29 C 0.094 3.906 30 N -0.507 5.507 31 C 0.114 3.886 32 H 0.057 0.943 33 H 0.045 0.955 34 H 0.084 0.916 35 H 0.068 0.932 36 H 0.090 0.910 37 H 0.151 0.849 38 H 0.102 0.898 39 H 0.061 0.939 40 H 0.070 0.930 41 H 0.099 0.901 42 H 0.050 0.950 43 H 0.066 0.934 44 H 0.018 0.982 45 H 0.263 0.737 46 H 0.150 0.850 47 H 0.167 0.833 48 H 0.181 0.819 49 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.127 3.378 4.593 22.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.003 4.003 3 N -0.331 5.331 4 C 0.302 3.698 5 O -0.452 6.452 6 C -0.177 4.177 7 C -0.124 4.124 8 H 0.169 0.831 9 C 0.292 3.708 10 O -0.473 6.473 11 N -0.324 5.324 12 C -0.066 4.066 13 C 0.161 3.839 14 H 0.026 0.974 15 C -0.194 4.194 16 C -0.572 4.572 17 H 0.083 0.917 18 C -0.186 4.186 19 N -0.559 5.559 20 Si 0.788 3.212 21 H -0.209 1.209 22 H -0.210 1.210 23 H -0.183 1.183 24 C 0.097 3.903 25 H 0.115 0.885 26 C -0.152 4.152 27 C -0.089 4.089 28 C -0.179 4.179 29 C -0.062 4.062 30 N -0.215 5.215 31 C -0.043 4.043 32 H 0.076 0.924 33 H 0.064 0.936 34 H 0.103 0.897 35 H 0.086 0.914 36 H 0.109 0.891 37 H 0.168 0.832 38 H 0.120 0.880 39 H 0.079 0.921 40 H 0.089 0.911 41 H 0.117 0.883 42 H 0.069 0.931 43 H 0.084 0.916 44 H 0.037 0.963 45 H 0.072 0.928 46 H 0.167 0.833 47 H 0.185 0.815 48 H 0.198 0.802 49 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -22.507 2.709 3.401 22.923 hybrid contribution 1.889 -0.480 1.005 2.193 sum -20.618 2.228 4.407 21.201 Atomic orbital electron populations 1.22073 0.94195 1.03216 1.01620 1.21465 0.95191 0.80360 1.03292 1.48290 1.64553 1.13983 1.06316 1.21173 0.75928 0.88531 0.84129 1.90685 1.55740 1.76315 1.22431 1.22386 1.04748 0.96079 0.94469 1.22357 0.90208 1.01331 0.98495 0.83135 1.20739 0.88492 0.85011 0.76549 1.90668 1.81877 1.21653 1.53076 1.48174 1.07213 1.07942 1.69022 1.21930 1.01109 0.81099 1.02472 1.18511 0.75892 0.94838 0.94646 0.97420 1.21900 1.02503 0.99457 0.95492 1.21568 0.94269 1.39610 1.01740 0.91720 1.25738 0.97521 0.95071 1.00226 1.70034 1.06417 1.43536 1.35886 0.85480 0.77568 0.78751 0.79371 1.20855 1.21008 1.18272 1.20139 0.91657 0.91318 0.87174 0.88508 1.20800 0.96255 1.02908 0.95253 1.21731 0.98489 0.94914 0.93753 1.22454 0.93278 0.99144 1.03028 1.23334 1.00151 0.94689 0.88073 1.67762 1.23249 1.14370 1.16150 1.22361 0.88347 0.93726 0.99829 0.92434 0.93564 0.89696 0.91386 0.89139 0.83164 0.87994 0.92070 0.91140 0.88297 0.93081 0.91559 0.96332 0.92786 0.83257 0.81543 0.80194 0.84496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.67 71.98 0.70 -2.28 16 2 C 0.12 2.81 6.64 86.38 0.57 3.39 16 3 N -0.60 -16.00 2.04 -798.31 -1.63 -17.63 16 4 C 0.51 15.71 6.93 87.90 0.61 16.32 16 5 O -0.57 -21.75 17.60 -3.04 -0.05 -21.80 16 6 C -0.14 -3.24 5.84 30.59 0.18 -3.07 16 7 C -0.10 -2.50 2.07 -10.48 -0.02 -2.52 16 8 H 0.15 2.65 6.26 -2.39 -0.01 2.63 16 9 C 0.50 18.72 6.71 87.66 0.59 19.30 16 10 O -0.59 -27.97 15.39 -3.04 -0.05 -28.02 16 11 N -0.59 -22.92 2.75 -826.81 -2.28 -25.20 16 12 C 0.08 2.07 9.38 127.77 1.20 3.27 16 13 C 0.26 13.13 2.63 44.25 0.12 13.25 16 14 H 0.01 0.47 6.91 -2.39 -0.02 0.46 16 15 C -0.13 -6.34 8.94 71.98 0.64 -5.70 16 16 C -0.53 -27.74 8.37 25.60 0.21 -27.53 16 17 H 0.06 3.21 7.52 -2.92 -0.02 3.19 16 18 C 0.01 0.74 5.30 84.66 0.45 1.18 16 19 N -0.92 -52.29 11.32 21.45 0.24 -52.05 16 20 Si 0.96 41.72 29.54 68.60 2.03 43.74 16 21 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 22 H -0.28 -12.19 7.11 99.48 0.71 -11.48 16 23 H -0.26 -10.48 7.11 99.48 0.71 -9.77 16 24 C 0.20 4.74 2.54 44.70 0.11 4.85 16 25 H 0.10 2.56 7.43 -2.39 -0.02 2.54 16 26 C -0.15 -2.71 4.35 -19.78 -0.09 -2.80 16 27 C -0.06 -0.91 9.84 22.47 0.22 -0.69 16 28 C -0.16 -1.79 10.11 22.36 0.23 -1.56 16 29 C 0.09 1.26 11.18 84.69 0.95 2.21 16 30 N -0.51 -9.74 10.36 -195.84 -2.03 -11.77 16 31 C 0.11 2.22 8.63 84.67 0.73 2.95 16 32 H 0.06 1.10 6.48 -2.39 -0.02 1.09 16 33 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 34 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.07 1.83 7.93 -2.39 -0.02 1.81 16 36 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 37 H 0.15 2.41 8.04 -2.38 -0.02 2.39 16 38 H 0.10 2.65 7.90 -2.39 -0.02 2.64 16 39 H 0.06 1.59 8.01 -2.39 -0.02 1.57 16 40 H 0.07 1.99 6.44 -2.39 -0.02 1.97 16 41 H 0.10 1.81 6.05 -2.39 -0.01 1.80 16 42 H 0.05 2.14 6.69 -2.39 -0.02 2.13 16 43 H 0.07 3.51 6.07 -2.38 -0.01 3.49 16 44 H 0.02 0.79 8.14 -2.38 -0.02 0.78 16 45 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 46 H 0.15 1.85 8.06 -2.91 -0.02 1.83 16 47 H 0.17 0.87 8.06 -2.91 -0.02 0.84 16 48 H 0.18 1.36 8.06 -2.91 -0.02 1.34 16 49 H 0.14 2.90 6.42 -2.91 -0.02 2.88 16 Total: -1.00 -76.47 392.66 4.59 -71.87 By element: Atomic # 1 Polarization: 19.30 SS G_CDS: 0.96 Total: 20.26 kcal Atomic # 6 Polarization: 13.19 SS G_CDS: 7.40 Total: 20.59 kcal Atomic # 7 Polarization: -100.95 SS G_CDS: -5.69 Total: -106.64 kcal Atomic # 8 Polarization: -49.72 SS G_CDS: -0.10 Total: -49.82 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.74 kcal Total: -76.47 4.59 -71.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001433578927.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.953 kcal (2) G-P(sol) polarization free energy of solvation -76.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.593 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds